Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5221.1 and Xcc-8004.5222.1 overlap by 29 nucleotides Xcc-8004.5222.1 and Xcc-8004.5223.1 overlap by 14 nucleotides
Xcc-8004.5221.1: Xcc-8004.5221.1 - D-mannonate oxidoreductase (EC 1.1.1.57), at 4,959,519 to 4,961,039
Xcc-8004.5221.1
Xcc-8004.5222.1: Xcc-8004.5222.1 - hypothetical protein, at 4,961,011 to 4,961,256
Xcc-8004.5222.1
Xcc-8004.5223.1: Xcc-8004.5223.1 - Prophage Lp2 protein 6, at 4,961,243 to 4,962,349
Xcc-8004.5223.1
Position (kb) 4961
4962 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4960.080 kb on + strand, within Xcc-8004.5221.1 at 4960.081 kb on - strand, within Xcc-8004.5221.1 at 4960.341 kb on + strand, within Xcc-8004.5221.1 at 4960.341 kb on + strand, within Xcc-8004.5221.1 at 4960.341 kb on + strand, within Xcc-8004.5221.1 at 4960.342 kb on - strand, within Xcc-8004.5221.1 at 4960.483 kb on - strand, within Xcc-8004.5221.1 at 4960.855 kb on + strand, within Xcc-8004.5221.1 at 4960.855 kb on + strand, within Xcc-8004.5221.1 at 4960.855 kb on + strand, within Xcc-8004.5221.1 at 4960.855 kb on + strand, within Xcc-8004.5221.1 at 4960.856 kb on - strand, within Xcc-8004.5221.1 at 4960.856 kb on - strand, within Xcc-8004.5221.1 at 4960.856 kb on - strand, within Xcc-8004.5221.1 at 4960.980 kb on + strand at 4960.980 kb on + strand at 4960.980 kb on + strand at 4960.981 kb on - strand at 4960.981 kb on - strand at 4961.014 kb on + strand at 4961.015 kb on - strand at 4961.015 kb on - strand at 4961.015 kb on - strand at 4961.015 kb on - strand at 4961.015 kb on - strand at 4961.015 kb on - strand at 4961.015 kb on - strand at 4961.015 kb on - strand at 4961.037 kb on + strand at 4961.037 kb on + strand at 4961.037 kb on + strand at 4961.038 kb on - strand at 4961.038 kb on - strand at 4961.038 kb on - strand at 4961.038 kb on - strand at 4961.038 kb on - strand at 4961.038 kb on - strand at 4961.050 kb on + strand, within Xcc-8004.5222.1 at 4961.089 kb on - strand, within Xcc-8004.5222.1 at 4961.182 kb on - strand, within Xcc-8004.5222.1 at 4961.208 kb on + strand, within Xcc-8004.5222.1 at 4961.216 kb on - strand, within Xcc-8004.5222.1 at 4961.240 kb on + strand at 4961.240 kb on + strand at 4961.252 kb on - strand at 4961.306 kb on - strand at 4961.364 kb on - strand, within Xcc-8004.5223.1 at 4961.364 kb on - strand, within Xcc-8004.5223.1 at 4961.364 kb on - strand, within Xcc-8004.5223.1 at 4961.441 kb on + strand, within Xcc-8004.5223.1 at 4961.442 kb on - strand, within Xcc-8004.5223.1 at 4961.442 kb on - strand, within Xcc-8004.5223.1 at 4961.485 kb on + strand, within Xcc-8004.5223.1 at 4961.486 kb on - strand, within Xcc-8004.5223.1 at 4961.505 kb on + strand, within Xcc-8004.5223.1 at 4961.505 kb on + strand, within Xcc-8004.5223.1 at 4961.505 kb on + strand, within Xcc-8004.5223.1 at 4961.505 kb on + strand, within Xcc-8004.5223.1 at 4961.506 kb on - strand, within Xcc-8004.5223.1 at 4961.529 kb on + strand, within Xcc-8004.5223.1 at 4961.529 kb on + strand, within Xcc-8004.5223.1 at 4961.537 kb on + strand, within Xcc-8004.5223.1 at 4961.588 kb on + strand, within Xcc-8004.5223.1 at 4961.589 kb on - strand, within Xcc-8004.5223.1 at 4961.607 kb on + strand, within Xcc-8004.5223.1 at 4961.608 kb on - strand, within Xcc-8004.5223.1 at 4961.718 kb on + strand, within Xcc-8004.5223.1 at 4961.718 kb on + strand, within Xcc-8004.5223.1 at 4961.744 kb on + strand, within Xcc-8004.5223.1 at 4961.854 kb on + strand, within Xcc-8004.5223.1 at 4961.854 kb on + strand, within Xcc-8004.5223.1 at 4961.939 kb on - strand, within Xcc-8004.5223.1 at 4962.007 kb on + strand, within Xcc-8004.5223.1 at 4962.143 kb on + strand, within Xcc-8004.5223.1 at 4962.144 kb on - strand, within Xcc-8004.5223.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 4,960,080 + Xcc-8004.5221.1 0.37 +0.4 4,960,081 - Xcc-8004.5221.1 0.37 -0.4 4,960,341 + Xcc-8004.5221.1 0.54 -0.4 4,960,341 + Xcc-8004.5221.1 0.54 +0.7 4,960,341 + Xcc-8004.5221.1 0.54 +1.2 4,960,342 - Xcc-8004.5221.1 0.54 -0.7 4,960,483 - Xcc-8004.5221.1 0.63 -1.6 4,960,855 + Xcc-8004.5221.1 0.88 -0.7 4,960,855 + Xcc-8004.5221.1 0.88 +1.0 4,960,855 + Xcc-8004.5221.1 0.88 -0.3 4,960,855 + Xcc-8004.5221.1 0.88 -1.2 4,960,856 - Xcc-8004.5221.1 0.88 +0.9 4,960,856 - Xcc-8004.5221.1 0.88 +1.0 4,960,856 - Xcc-8004.5221.1 0.88 +0.4 4,960,980 + +0.3 4,960,980 + +1.1 4,960,980 + -2.7 4,960,981 - -0.5 4,960,981 - -2.5 4,961,014 + +0.1 4,961,015 - +0.6 4,961,015 - +0.7 4,961,015 - +0.3 4,961,015 - +0.3 4,961,015 - +0.2 4,961,015 - -0.7 4,961,015 - -0.1 4,961,015 - +1.3 4,961,037 + +1.3 4,961,037 + -0.8 4,961,037 + -0.9 4,961,038 - -0.3 4,961,038 - -1.3 4,961,038 - -1.5 4,961,038 - +0.7 4,961,038 - -1.3 4,961,038 - +0.3 4,961,050 + Xcc-8004.5222.1 0.16 -2.2 4,961,089 - Xcc-8004.5222.1 0.32 -0.8 4,961,182 - Xcc-8004.5222.1 0.70 +0.9 4,961,208 + Xcc-8004.5222.1 0.80 -1.7 4,961,216 - Xcc-8004.5222.1 0.83 -0.8 4,961,240 + +1.1 4,961,240 + +0.0 4,961,252 - +0.5 4,961,306 - -2.0 4,961,364 - Xcc-8004.5223.1 0.11 +0.9 4,961,364 - Xcc-8004.5223.1 0.11 -0.6 4,961,364 - Xcc-8004.5223.1 0.11 -0.1 4,961,441 + Xcc-8004.5223.1 0.18 +0.1 4,961,442 - Xcc-8004.5223.1 0.18 +0.5 4,961,442 - Xcc-8004.5223.1 0.18 -1.6 4,961,485 + Xcc-8004.5223.1 0.22 -0.5 4,961,486 - Xcc-8004.5223.1 0.22 -0.1 4,961,505 + Xcc-8004.5223.1 0.24 -0.2 4,961,505 + Xcc-8004.5223.1 0.24 -1.0 4,961,505 + Xcc-8004.5223.1 0.24 -0.5 4,961,505 + Xcc-8004.5223.1 0.24 -1.4 4,961,506 - Xcc-8004.5223.1 0.24 +3.2 4,961,529 + Xcc-8004.5223.1 0.26 +3.1 4,961,529 + Xcc-8004.5223.1 0.26 +0.4 4,961,537 + Xcc-8004.5223.1 0.27 -1.0 4,961,588 + Xcc-8004.5223.1 0.31 -0.1 4,961,589 - Xcc-8004.5223.1 0.31 +2.0 4,961,607 + Xcc-8004.5223.1 0.33 -0.5 4,961,608 - Xcc-8004.5223.1 0.33 -0.2 4,961,718 + Xcc-8004.5223.1 0.43 -0.7 4,961,718 + Xcc-8004.5223.1 0.43 +0.1 4,961,744 + Xcc-8004.5223.1 0.45 +0.7 4,961,854 + Xcc-8004.5223.1 0.55 +0.3 4,961,854 + Xcc-8004.5223.1 0.55 +0.0 4,961,939 - Xcc-8004.5223.1 0.63 -1.1 4,962,007 + Xcc-8004.5223.1 0.69 +0.6 4,962,143 + Xcc-8004.5223.1 0.81 +0.2 4,962,144 - Xcc-8004.5223.1 0.81 -1.6
Or see this region's nucleotide sequence