Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1134.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1132.1 and Xcc-8004.1133.1 overlap by 13 nucleotidesXcc-8004.1133.1 and Xcc-8004.1134.1 are separated by 97 nucleotidesXcc-8004.1134.1 and Xcc-8004.1135.1 are separated by 85 nucleotidesXcc-8004.1135.1 and Xcc-8004.1136.1 are separated by 132 nucleotides Xcc-8004.1132.1: Xcc-8004.1132.1 - Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3), at 1,080,713 to 1,081,420 Xcc-8004.1132.1 Xcc-8004.1133.1: Xcc-8004.1133.1 - Rubredoxin, at 1,081,408 to 1,081,599 Xcc-8004.1133.1 Xcc-8004.1134.1: Xcc-8004.1134.1 - Protein sirB1, at 1,081,697 to 1,082,533 Xcc-8004.1134.1 Xcc-8004.1135.1: Xcc-8004.1135.1 - FIG01210448: hypothetical protein, at 1,082,619 to 1,083,068 Xcc-8004.1135.1 Xcc-8004.1136.1: Xcc-8004.1136.1 - Ribose 5-phosphate isomerase A (EC 5.3.1.6), at 1,083,201 to 1,083,848 Xcc-8004.1136.1 Position (kb) 1081 1082 1083Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1080.715 kb on - strandat 1080.721 kb on + strandat 1080.772 kb on - strandat 1080.957 kb on + strand, within Xcc-8004.1132.1at 1080.957 kb on + strand, within Xcc-8004.1132.1at 1080.957 kb on + strand, within Xcc-8004.1132.1at 1081.432 kb on + strand, within Xcc-8004.1133.1at 1081.433 kb on - strand, within Xcc-8004.1133.1at 1081.694 kb on + strandat 1081.695 kb on - strandat 1081.698 kb on + strandat 1081.699 kb on - strandat 1081.699 kb on - strandat 1081.699 kb on - strandat 1081.833 kb on + strand, within Xcc-8004.1134.1at 1081.834 kb on - strand, within Xcc-8004.1134.1at 1081.834 kb on - strand, within Xcc-8004.1134.1at 1081.834 kb on - strand, within Xcc-8004.1134.1at 1081.834 kb on - strand, within Xcc-8004.1134.1at 1081.936 kb on - strand, within Xcc-8004.1134.1at 1081.936 kb on - strand, within Xcc-8004.1134.1at 1082.136 kb on - strand, within Xcc-8004.1134.1at 1082.136 kb on - strand, within Xcc-8004.1134.1at 1082.259 kb on + strand, within Xcc-8004.1134.1at 1082.259 kb on + strand, within Xcc-8004.1134.1at 1082.259 kb on + strand, within Xcc-8004.1134.1at 1082.259 kb on + strand, within Xcc-8004.1134.1at 1082.260 kb on - strand, within Xcc-8004.1134.1at 1082.260 kb on - strand, within Xcc-8004.1134.1at 1082.277 kb on + strand, within Xcc-8004.1134.1at 1082.277 kb on + strand, within Xcc-8004.1134.1at 1082.277 kb on + strand, within Xcc-8004.1134.1at 1082.280 kb on + strand, within Xcc-8004.1134.1at 1082.281 kb on - strand, within Xcc-8004.1134.1at 1082.302 kb on - strand, within Xcc-8004.1134.1at 1082.323 kb on - strand, within Xcc-8004.1134.1at 1082.323 kb on - strand, within Xcc-8004.1134.1at 1082.415 kb on + strand, within Xcc-8004.1134.1at 1082.416 kb on - strand, within Xcc-8004.1134.1at 1082.416 kb on - strand, within Xcc-8004.1134.1at 1082.459 kb on + strandat 1082.459 kb on + strandat 1082.651 kb on + strandat 1082.713 kb on + strand, within Xcc-8004.1135.1at 1082.738 kb on - strand, within Xcc-8004.1135.1at 1082.815 kb on + strand, within Xcc-8004.1135.1at 1082.854 kb on + strand, within Xcc-8004.1135.1at 1082.971 kb on + strand, within Xcc-8004.1135.1at 1083.202 kb on + strandat 1083.203 kb on - strandat 1083.203 kb on - strandat 1083.203 kb on - strandat 1083.203 kb on - strandat 1083.203 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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1,080,715 - +0.0
1,080,721 + +0.3
1,080,772 - +2.1
1,080,957 + Xcc-8004.1132.1 0.34 -0.6
1,080,957 + Xcc-8004.1132.1 0.34 +0.0
1,080,957 + Xcc-8004.1132.1 0.34 -1.2
1,081,432 + Xcc-8004.1133.1 0.12 -0.0
1,081,433 - Xcc-8004.1133.1 0.13 -1.6
1,081,694 + -0.8
1,081,695 - -0.4
1,081,698 + +0.7
1,081,699 - +0.1
1,081,699 - -1.0
1,081,699 - +0.4
1,081,833 + Xcc-8004.1134.1 0.16 -1.8
1,081,834 - Xcc-8004.1134.1 0.16 -3.4
1,081,834 - Xcc-8004.1134.1 0.16 -2.1
1,081,834 - Xcc-8004.1134.1 0.16 -1.3
1,081,834 - Xcc-8004.1134.1 0.16 -0.3
1,081,936 - Xcc-8004.1134.1 0.29 +0.8
1,081,936 - Xcc-8004.1134.1 0.29 +0.5
1,082,136 - Xcc-8004.1134.1 0.52 +0.2
1,082,136 - Xcc-8004.1134.1 0.52 -1.4
1,082,259 + Xcc-8004.1134.1 0.67 +0.1
1,082,259 + Xcc-8004.1134.1 0.67 -0.2
1,082,259 + Xcc-8004.1134.1 0.67 -1.0
1,082,259 + Xcc-8004.1134.1 0.67 -1.9
1,082,260 - Xcc-8004.1134.1 0.67 -0.2
1,082,260 - Xcc-8004.1134.1 0.67 -0.5
1,082,277 + Xcc-8004.1134.1 0.69 -1.7
1,082,277 + Xcc-8004.1134.1 0.69 -1.6
1,082,277 + Xcc-8004.1134.1 0.69 -2.4
1,082,280 + Xcc-8004.1134.1 0.70 +0.9
1,082,281 - Xcc-8004.1134.1 0.70 -3.0
1,082,302 - Xcc-8004.1134.1 0.72 -1.0
1,082,323 - Xcc-8004.1134.1 0.75 -0.2
1,082,323 - Xcc-8004.1134.1 0.75 -1.1
1,082,415 + Xcc-8004.1134.1 0.86 -2.9
1,082,416 - Xcc-8004.1134.1 0.86 -2.3
1,082,416 - Xcc-8004.1134.1 0.86 -0.1
1,082,459 + -2.0
1,082,459 + +0.5
1,082,651 + +1.0
1,082,713 + Xcc-8004.1135.1 0.21 -1.8
1,082,738 - Xcc-8004.1135.1 0.26 -1.3
1,082,815 + Xcc-8004.1135.1 0.44 +1.1
1,082,854 + Xcc-8004.1135.1 0.52 -1.3
1,082,971 + Xcc-8004.1135.1 0.78 -0.4
1,083,202 + +0.8
1,083,203 - -2.0
1,083,203 - +0.7
1,083,203 - -2.4
1,083,203 - +0.7
1,083,203 - -2.3

Or see this region's nucleotide sequence