Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15450

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15445 and ABZR87_RS15450 are separated by 146 nucleotidesABZR87_RS15450 and ABZR87_RS15455 are separated by 12 nucleotides ABZR87_RS15445: ABZR87_RS15445 - MFS transporter, at 3,249,839 to 3,251,230 _RS15445 ABZR87_RS15450: ABZR87_RS15450 - 2-dehydropantoate 2-reductase, at 3,251,377 to 3,252,318 _RS15450 ABZR87_RS15455: ABZR87_RS15455 - aldehyde dehydrogenase, at 3,252,331 to 3,253,815 _RS15455 Position (kb) 3251 3252 3253Strain fitness (log2 ratio) -1 0 1at 3250.407 kb on + strand, within ABZR87_RS15445at 3250.408 kb on - strand, within ABZR87_RS15445at 3250.408 kb on - strand, within ABZR87_RS15445at 3250.704 kb on + strand, within ABZR87_RS15445at 3250.705 kb on - strand, within ABZR87_RS15445at 3251.410 kb on + strandat 3251.411 kb on - strandat 3251.425 kb on + strandat 3251.425 kb on + strandat 3251.619 kb on + strand, within ABZR87_RS15450at 3251.620 kb on - strand, within ABZR87_RS15450at 3251.690 kb on - strand, within ABZR87_RS15450at 3252.469 kb on + strandat 3252.469 kb on + strandat 3252.470 kb on - strandat 3252.470 kb on - strandat 3252.470 kb on - strandat 3252.535 kb on + strand, within ABZR87_RS15455at 3252.656 kb on + strand, within ABZR87_RS15455at 3252.656 kb on + strand, within ABZR87_RS15455at 3253.003 kb on + strand, within ABZR87_RS15455at 3253.003 kb on + strand, within ABZR87_RS15455at 3253.003 kb on + strand, within ABZR87_RS15455at 3253.052 kb on + strand, within ABZR87_RS15455at 3253.053 kb on - strand, within ABZR87_RS15455at 3253.102 kb on - strand, within ABZR87_RS15455at 3253.102 kb on - strand, within ABZR87_RS15455at 3253.281 kb on + strand, within ABZR87_RS15455

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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3,250,407 + ABZR87_RS15445 0.41 +0.1
3,250,408 - ABZR87_RS15445 0.41 +0.5
3,250,408 - ABZR87_RS15445 0.41 +0.3
3,250,704 + ABZR87_RS15445 0.62 -1.4
3,250,705 - ABZR87_RS15445 0.62 +1.0
3,251,410 + -0.1
3,251,411 - -0.6
3,251,425 + -0.5
3,251,425 + +0.1
3,251,619 + ABZR87_RS15450 0.26 -1.4
3,251,620 - ABZR87_RS15450 0.26 -0.2
3,251,690 - ABZR87_RS15450 0.33 -0.2
3,252,469 + -0.3
3,252,469 + +0.6
3,252,470 - -0.5
3,252,470 - -0.9
3,252,470 - -0.2
3,252,535 + ABZR87_RS15455 0.14 +0.9
3,252,656 + ABZR87_RS15455 0.22 +0.6
3,252,656 + ABZR87_RS15455 0.22 +1.0
3,253,003 + ABZR87_RS15455 0.45 +0.0
3,253,003 + ABZR87_RS15455 0.45 +0.3
3,253,003 + ABZR87_RS15455 0.45 -0.3
3,253,052 + ABZR87_RS15455 0.49 -1.3
3,253,053 - ABZR87_RS15455 0.49 -0.2
3,253,102 - ABZR87_RS15455 0.52 -0.0
3,253,102 - ABZR87_RS15455 0.52 +1.3
3,253,281 + ABZR87_RS15455 0.64 +0.6

Or see this region's nucleotide sequence