Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23310

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23305 and ABZR87_RS23310 are separated by 117 nucleotidesABZR87_RS23310 and ABZR87_RS23315 are separated by 611 nucleotides ABZR87_RS23305: ABZR87_RS23305 - PepSY-associated TM helix domain-containing protein, at 1,591,593 to 1,593,215 _RS23305 ABZR87_RS23310: ABZR87_RS23310 - TonB-dependent receptor, at 1,593,333 to 1,595,519 _RS23310 ABZR87_RS23315: ABZR87_RS23315 - MarR family transcriptional regulator, at 1,596,131 to 1,596,547 _RS23315 Position (kb) 1593 1594 1595 1596Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1592.433 kb on + strand, within ABZR87_RS23305at 1592.434 kb on - strand, within ABZR87_RS23305at 1592.470 kb on + strand, within ABZR87_RS23305at 1592.471 kb on - strand, within ABZR87_RS23305at 1592.502 kb on + strand, within ABZR87_RS23305at 1592.602 kb on - strand, within ABZR87_RS23305at 1592.602 kb on - strand, within ABZR87_RS23305at 1592.613 kb on + strand, within ABZR87_RS23305at 1592.634 kb on + strand, within ABZR87_RS23305at 1592.635 kb on - strand, within ABZR87_RS23305at 1592.662 kb on - strand, within ABZR87_RS23305at 1592.697 kb on + strand, within ABZR87_RS23305at 1592.697 kb on + strand, within ABZR87_RS23305at 1592.697 kb on + strand, within ABZR87_RS23305at 1592.874 kb on + strand, within ABZR87_RS23305at 1592.875 kb on - strand, within ABZR87_RS23305at 1592.875 kb on - strand, within ABZR87_RS23305at 1592.875 kb on - strand, within ABZR87_RS23305at 1592.877 kb on + strand, within ABZR87_RS23305at 1592.878 kb on - strand, within ABZR87_RS23305at 1592.878 kb on - strand, within ABZR87_RS23305at 1592.878 kb on - strand, within ABZR87_RS23305at 1592.878 kb on - strand, within ABZR87_RS23305at 1592.878 kb on - strand, within ABZR87_RS23305at 1592.878 kb on - strand, within ABZR87_RS23305at 1592.878 kb on - strand, within ABZR87_RS23305at 1593.213 kb on + strandat 1593.213 kb on + strandat 1593.213 kb on + strandat 1593.213 kb on + strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.214 kb on - strandat 1593.219 kb on + strandat 1593.219 kb on + strandat 1593.220 kb on - strandat 1593.220 kb on - strandat 1593.349 kb on + strandat 1593.350 kb on - strandat 1593.350 kb on - strandat 1593.350 kb on - strandat 1593.401 kb on - strandat 1593.684 kb on + strand, within ABZR87_RS23310at 1593.684 kb on + strand, within ABZR87_RS23310at 1593.684 kb on + strand, within ABZR87_RS23310at 1593.744 kb on + strand, within ABZR87_RS23310at 1593.745 kb on - strand, within ABZR87_RS23310at 1593.745 kb on - strand, within ABZR87_RS23310at 1593.843 kb on + strand, within ABZR87_RS23310at 1593.843 kb on + strand, within ABZR87_RS23310at 1593.843 kb on + strand, within ABZR87_RS23310at 1593.844 kb on - strand, within ABZR87_RS23310at 1593.844 kb on - strand, within ABZR87_RS23310at 1593.844 kb on - strand, within ABZR87_RS23310at 1593.929 kb on + strand, within ABZR87_RS23310at 1593.929 kb on + strand, within ABZR87_RS23310at 1593.929 kb on + strand, within ABZR87_RS23310at 1593.930 kb on - strand, within ABZR87_RS23310at 1594.052 kb on + strand, within ABZR87_RS23310at 1594.052 kb on + strand, within ABZR87_RS23310at 1594.052 kb on + strand, within ABZR87_RS23310at 1594.052 kb on + strand, within ABZR87_RS23310at 1594.053 kb on - strand, within ABZR87_RS23310at 1594.053 kb on - strand, within ABZR87_RS23310at 1594.128 kb on + strand, within ABZR87_RS23310at 1594.128 kb on + strand, within ABZR87_RS23310at 1594.128 kb on + strand, within ABZR87_RS23310at 1594.128 kb on + strand, within ABZR87_RS23310at 1594.128 kb on + strand, within ABZR87_RS23310at 1594.129 kb on - strand, within ABZR87_RS23310at 1594.129 kb on - strand, within ABZR87_RS23310at 1594.156 kb on - strand, within ABZR87_RS23310at 1594.158 kb on + strand, within ABZR87_RS23310at 1594.158 kb on + strand, within ABZR87_RS23310at 1594.158 kb on + strand, within ABZR87_RS23310at 1594.158 kb on + strand, within ABZR87_RS23310at 1594.260 kb on + strand, within ABZR87_RS23310at 1594.260 kb on + strand, within ABZR87_RS23310at 1594.261 kb on - strand, within ABZR87_RS23310at 1594.261 kb on - strand, within ABZR87_RS23310at 1594.261 kb on - strand, within ABZR87_RS23310at 1594.261 kb on - strand, within ABZR87_RS23310at 1594.344 kb on + strand, within ABZR87_RS23310at 1594.345 kb on - strand, within ABZR87_RS23310at 1594.422 kb on + strand, within ABZR87_RS23310at 1594.423 kb on - strand, within ABZR87_RS23310at 1594.423 kb on - strand, within ABZR87_RS23310at 1594.431 kb on + strand, within ABZR87_RS23310at 1594.432 kb on - strand, within ABZR87_RS23310at 1594.440 kb on + strand, within ABZR87_RS23310at 1594.440 kb on + strand, within ABZR87_RS23310at 1594.446 kb on + strand, within ABZR87_RS23310at 1594.446 kb on + strand, within ABZR87_RS23310at 1594.446 kb on + strand, within ABZR87_RS23310at 1594.447 kb on - strand, within ABZR87_RS23310at 1594.587 kb on + strand, within ABZR87_RS23310at 1594.587 kb on + strand, within ABZR87_RS23310at 1594.588 kb on - strand, within ABZR87_RS23310at 1594.745 kb on + strand, within ABZR87_RS23310at 1594.745 kb on + strand, within ABZR87_RS23310at 1594.746 kb on - strand, within ABZR87_RS23310at 1594.746 kb on - strand, within ABZR87_RS23310at 1594.746 kb on - strand, within ABZR87_RS23310at 1594.746 kb on - strand, within ABZR87_RS23310at 1594.767 kb on + strand, within ABZR87_RS23310at 1594.797 kb on + strand, within ABZR87_RS23310at 1594.797 kb on + strand, within ABZR87_RS23310at 1594.798 kb on - strand, within ABZR87_RS23310at 1594.863 kb on + strand, within ABZR87_RS23310at 1594.863 kb on + strand, within ABZR87_RS23310at 1594.864 kb on - strand, within ABZR87_RS23310at 1594.872 kb on + strand, within ABZR87_RS23310at 1594.872 kb on + strand, within ABZR87_RS23310at 1594.872 kb on + strand, within ABZR87_RS23310at 1594.873 kb on - strand, within ABZR87_RS23310at 1594.873 kb on - strand, within ABZR87_RS23310at 1594.873 kb on - strand, within ABZR87_RS23310at 1594.873 kb on - strand, within ABZR87_RS23310at 1594.934 kb on - strand, within ABZR87_RS23310at 1595.037 kb on + strand, within ABZR87_RS23310at 1595.037 kb on + strand, within ABZR87_RS23310at 1595.037 kb on + strand, within ABZR87_RS23310at 1595.037 kb on + strand, within ABZR87_RS23310at 1595.038 kb on - strand, within ABZR87_RS23310at 1595.038 kb on - strand, within ABZR87_RS23310at 1595.038 kb on - strand, within ABZR87_RS23310at 1595.038 kb on - strand, within ABZR87_RS23310at 1595.059 kb on - strand, within ABZR87_RS23310at 1595.060 kb on + strand, within ABZR87_RS23310at 1595.060 kb on + strand, within ABZR87_RS23310at 1595.235 kb on + strand, within ABZR87_RS23310at 1595.235 kb on + strand, within ABZR87_RS23310at 1595.235 kb on + strand, within ABZR87_RS23310at 1595.236 kb on - strand, within ABZR87_RS23310at 1595.236 kb on - strand, within ABZR87_RS23310at 1595.236 kb on - strand, within ABZR87_RS23310at 1595.245 kb on - strand, within ABZR87_RS23310at 1595.245 kb on - strand, within ABZR87_RS23310at 1595.245 kb on - strand, within ABZR87_RS23310at 1595.292 kb on + strand, within ABZR87_RS23310at 1595.292 kb on + strand, within ABZR87_RS23310at 1595.293 kb on - strand, within ABZR87_RS23310at 1595.343 kb on + strandat 1595.439 kb on + strandat 1595.439 kb on + strandat 1595.439 kb on + strandat 1595.440 kb on - strandat 1595.493 kb on - strandat 1595.499 kb on - strandat 1595.499 kb on - strandat 1595.504 kb on + strandat 1595.623 kb on + strandat 1595.761 kb on + strandat 1596.033 kb on + strandat 1596.033 kb on + strandat 1596.176 kb on - strand, within ABZR87_RS23315at 1596.176 kb on - strand, within ABZR87_RS23315at 1596.490 kb on + strand, within ABZR87_RS23315at 1596.506 kb on - strandat 1596.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,592,433 + ABZR87_RS23305 0.52 -3.2
1,592,434 - ABZR87_RS23305 0.52 -1.0
1,592,470 + ABZR87_RS23305 0.54 -2.2
1,592,471 - ABZR87_RS23305 0.54 -2.5
1,592,502 + ABZR87_RS23305 0.56 -2.0
1,592,602 - ABZR87_RS23305 0.62 -2.2
1,592,602 - ABZR87_RS23305 0.62 -3.9
1,592,613 + ABZR87_RS23305 0.63 -3.2
1,592,634 + ABZR87_RS23305 0.64 -3.1
1,592,635 - ABZR87_RS23305 0.64 -1.7
1,592,662 - ABZR87_RS23305 0.66 -2.5
1,592,697 + ABZR87_RS23305 0.68 -3.9
1,592,697 + ABZR87_RS23305 0.68 -3.9
1,592,697 + ABZR87_RS23305 0.68 +0.0
1,592,874 + ABZR87_RS23305 0.79 -3.4
1,592,875 - ABZR87_RS23305 0.79 -2.3
1,592,875 - ABZR87_RS23305 0.79 -2.6
1,592,875 - ABZR87_RS23305 0.79 -4.0
1,592,877 + ABZR87_RS23305 0.79 +1.0
1,592,878 - ABZR87_RS23305 0.79 -2.5
1,592,878 - ABZR87_RS23305 0.79 -2.3
1,592,878 - ABZR87_RS23305 0.79 -2.8
1,592,878 - ABZR87_RS23305 0.79 -2.8
1,592,878 - ABZR87_RS23305 0.79 -3.0
1,592,878 - ABZR87_RS23305 0.79 -3.5
1,592,878 - ABZR87_RS23305 0.79 -3.0
1,593,213 + -0.1
1,593,213 + +0.1
1,593,213 + -0.3
1,593,213 + -0.8
1,593,214 - +1.2
1,593,214 - +0.2
1,593,214 - +0.3
1,593,214 - -0.2
1,593,214 - +0.1
1,593,214 - +0.3
1,593,214 - -0.2
1,593,214 - -0.2
1,593,214 - -0.5
1,593,219 + -0.2
1,593,219 + +0.3
1,593,220 - -0.2
1,593,220 - -0.3
1,593,349 + +0.2
1,593,350 - +0.1
1,593,350 - +0.2
1,593,350 - +0.2
1,593,401 - +0.9
1,593,684 + ABZR87_RS23310 0.16 -0.1
1,593,684 + ABZR87_RS23310 0.16 +0.9
1,593,684 + ABZR87_RS23310 0.16 +1.1
1,593,744 + ABZR87_RS23310 0.19 -0.6
1,593,745 - ABZR87_RS23310 0.19 -0.1
1,593,745 - ABZR87_RS23310 0.19 +0.1
1,593,843 + ABZR87_RS23310 0.23 +0.5
1,593,843 + ABZR87_RS23310 0.23 -1.0
1,593,843 + ABZR87_RS23310 0.23 +0.3
1,593,844 - ABZR87_RS23310 0.23 -0.3
1,593,844 - ABZR87_RS23310 0.23 +0.6
1,593,844 - ABZR87_RS23310 0.23 +0.5
1,593,929 + ABZR87_RS23310 0.27 +0.2
1,593,929 + ABZR87_RS23310 0.27 +0.3
1,593,929 + ABZR87_RS23310 0.27 +0.0
1,593,930 - ABZR87_RS23310 0.27 -1.1
1,594,052 + ABZR87_RS23310 0.33 +1.0
1,594,052 + ABZR87_RS23310 0.33 +0.5
1,594,052 + ABZR87_RS23310 0.33 -0.7
1,594,052 + ABZR87_RS23310 0.33 -1.3
1,594,053 - ABZR87_RS23310 0.33 -0.5
1,594,053 - ABZR87_RS23310 0.33 -0.2
1,594,128 + ABZR87_RS23310 0.36 +1.0
1,594,128 + ABZR87_RS23310 0.36 +1.0
1,594,128 + ABZR87_RS23310 0.36 +0.3
1,594,128 + ABZR87_RS23310 0.36 +1.6
1,594,128 + ABZR87_RS23310 0.36 +0.2
1,594,129 - ABZR87_RS23310 0.36 +0.8
1,594,129 - ABZR87_RS23310 0.36 -0.1
1,594,156 - ABZR87_RS23310 0.38 +0.0
1,594,158 + ABZR87_RS23310 0.38 +0.9
1,594,158 + ABZR87_RS23310 0.38 -0.8
1,594,158 + ABZR87_RS23310 0.38 -0.6
1,594,158 + ABZR87_RS23310 0.38 +0.1
1,594,260 + ABZR87_RS23310 0.42 -0.2
1,594,260 + ABZR87_RS23310 0.42 +0.0
1,594,261 - ABZR87_RS23310 0.42 -0.5
1,594,261 - ABZR87_RS23310 0.42 +0.3
1,594,261 - ABZR87_RS23310 0.42 +2.2
1,594,261 - ABZR87_RS23310 0.42 +1.1
1,594,344 + ABZR87_RS23310 0.46 -0.5
1,594,345 - ABZR87_RS23310 0.46 -0.8
1,594,422 + ABZR87_RS23310 0.50 +0.7
1,594,423 - ABZR87_RS23310 0.50 +0.8
1,594,423 - ABZR87_RS23310 0.50 +0.9
1,594,431 + ABZR87_RS23310 0.50 -0.1
1,594,432 - ABZR87_RS23310 0.50 +0.6
1,594,440 + ABZR87_RS23310 0.51 +1.0
1,594,440 + ABZR87_RS23310 0.51 -0.1
1,594,446 + ABZR87_RS23310 0.51 -1.8
1,594,446 + ABZR87_RS23310 0.51 +1.0
1,594,446 + ABZR87_RS23310 0.51 -0.6
1,594,447 - ABZR87_RS23310 0.51 -2.3
1,594,587 + ABZR87_RS23310 0.57 +1.8
1,594,587 + ABZR87_RS23310 0.57 -0.5
1,594,588 - ABZR87_RS23310 0.57 -0.1
1,594,745 + ABZR87_RS23310 0.65 -0.1
1,594,745 + ABZR87_RS23310 0.65 +0.2
1,594,746 - ABZR87_RS23310 0.65 +0.2
1,594,746 - ABZR87_RS23310 0.65 +0.5
1,594,746 - ABZR87_RS23310 0.65 +0.0
1,594,746 - ABZR87_RS23310 0.65 +0.5
1,594,767 + ABZR87_RS23310 0.66 -1.4
1,594,797 + ABZR87_RS23310 0.67 -0.3
1,594,797 + ABZR87_RS23310 0.67 +0.4
1,594,798 - ABZR87_RS23310 0.67 +0.9
1,594,863 + ABZR87_RS23310 0.70 +0.1
1,594,863 + ABZR87_RS23310 0.70 -1.3
1,594,864 - ABZR87_RS23310 0.70 -1.0
1,594,872 + ABZR87_RS23310 0.70 -0.3
1,594,872 + ABZR87_RS23310 0.70 +0.8
1,594,872 + ABZR87_RS23310 0.70 -0.7
1,594,873 - ABZR87_RS23310 0.70 -0.1
1,594,873 - ABZR87_RS23310 0.70 +0.8
1,594,873 - ABZR87_RS23310 0.70 +1.7
1,594,873 - ABZR87_RS23310 0.70 +0.4
1,594,934 - ABZR87_RS23310 0.73 -0.1
1,595,037 + ABZR87_RS23310 0.78 -1.1
1,595,037 + ABZR87_RS23310 0.78 -1.5
1,595,037 + ABZR87_RS23310 0.78 +0.8
1,595,037 + ABZR87_RS23310 0.78 +0.1
1,595,038 - ABZR87_RS23310 0.78 +0.9
1,595,038 - ABZR87_RS23310 0.78 +0.8
1,595,038 - ABZR87_RS23310 0.78 -0.4
1,595,038 - ABZR87_RS23310 0.78 -1.5
1,595,059 - ABZR87_RS23310 0.79 +0.2
1,595,060 + ABZR87_RS23310 0.79 +0.8
1,595,060 + ABZR87_RS23310 0.79 -1.2
1,595,235 + ABZR87_RS23310 0.87 -1.1
1,595,235 + ABZR87_RS23310 0.87 -0.3
1,595,235 + ABZR87_RS23310 0.87 -0.1
1,595,236 - ABZR87_RS23310 0.87 +0.4
1,595,236 - ABZR87_RS23310 0.87 -0.5
1,595,236 - ABZR87_RS23310 0.87 -1.4
1,595,245 - ABZR87_RS23310 0.87 +0.6
1,595,245 - ABZR87_RS23310 0.87 -0.3
1,595,245 - ABZR87_RS23310 0.87 +0.1
1,595,292 + ABZR87_RS23310 0.90 +0.1
1,595,292 + ABZR87_RS23310 0.90 -0.1
1,595,293 - ABZR87_RS23310 0.90 +3.0
1,595,343 + -0.1
1,595,439 + +0.4
1,595,439 + -0.7
1,595,439 + +1.1
1,595,440 - -1.3
1,595,493 - -0.1
1,595,499 - +1.0
1,595,499 - +1.1
1,595,504 + +0.9
1,595,623 + -0.5
1,595,761 + +0.4
1,596,033 + +1.2
1,596,033 + -0.6
1,596,176 - ABZR87_RS23315 0.11 -0.3
1,596,176 - ABZR87_RS23315 0.11 +0.1
1,596,490 + ABZR87_RS23315 0.86 +0.8
1,596,506 - +0.5
1,596,506 - +0.6

Or see this region's nucleotide sequence