Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06185

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06175 and ABZR87_RS06180 overlap by 10 nucleotidesABZR87_RS06180 and ABZR87_RS06185 overlap by 1 nucleotidesABZR87_RS06185 and ABZR87_RS06190 are separated by 279 nucleotides ABZR87_RS06175: ABZR87_RS06175 - Fe2+-dependent dioxygenase, at 1,316,206 to 1,316,889 _RS06175 ABZR87_RS06180: ABZR87_RS06180 - tetratricopeptide repeat protein, at 1,316,880 to 1,317,650 _RS06180 ABZR87_RS06185: ABZR87_RS06185 - TonB-dependent siderophore receptor, at 1,317,650 to 1,319,929 _RS06185 ABZR87_RS06190: ABZR87_RS06190 - enoyl-CoA hydratase/isomerase family protein, at 1,320,209 to 1,320,982 _RS06190 Position (kb) 1317 1318 1319 1320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1316.688 kb on + strand, within ABZR87_RS06175at 1316.688 kb on + strand, within ABZR87_RS06175at 1316.688 kb on + strand, within ABZR87_RS06175at 1316.688 kb on + strand, within ABZR87_RS06175at 1316.689 kb on - strand, within ABZR87_RS06175at 1316.689 kb on - strand, within ABZR87_RS06175at 1317.103 kb on + strand, within ABZR87_RS06180at 1317.103 kb on + strand, within ABZR87_RS06180at 1317.103 kb on + strand, within ABZR87_RS06180at 1317.103 kb on + strand, within ABZR87_RS06180at 1317.104 kb on - strand, within ABZR87_RS06180at 1317.104 kb on - strand, within ABZR87_RS06180at 1317.104 kb on - strand, within ABZR87_RS06180at 1317.104 kb on - strand, within ABZR87_RS06180at 1317.104 kb on - strand, within ABZR87_RS06180at 1317.154 kb on + strand, within ABZR87_RS06180at 1317.155 kb on - strand, within ABZR87_RS06180at 1317.274 kb on + strand, within ABZR87_RS06180at 1317.275 kb on - strand, within ABZR87_RS06180at 1317.275 kb on - strand, within ABZR87_RS06180at 1317.275 kb on - strand, within ABZR87_RS06180at 1317.275 kb on - strand, within ABZR87_RS06180at 1317.275 kb on - strand, within ABZR87_RS06180at 1317.275 kb on - strand, within ABZR87_RS06180at 1317.280 kb on + strand, within ABZR87_RS06180at 1317.280 kb on + strand, within ABZR87_RS06180at 1317.280 kb on + strand, within ABZR87_RS06180at 1317.281 kb on - strand, within ABZR87_RS06180at 1317.281 kb on - strand, within ABZR87_RS06180at 1317.281 kb on - strand, within ABZR87_RS06180at 1317.281 kb on - strand, within ABZR87_RS06180at 1317.281 kb on - strand, within ABZR87_RS06180at 1317.319 kb on + strand, within ABZR87_RS06180at 1317.320 kb on - strand, within ABZR87_RS06180at 1317.370 kb on + strand, within ABZR87_RS06180at 1317.371 kb on - strand, within ABZR87_RS06180at 1317.371 kb on - strand, within ABZR87_RS06180at 1317.371 kb on - strand, within ABZR87_RS06180at 1317.371 kb on - strand, within ABZR87_RS06180at 1317.655 kb on - strandat 1317.705 kb on + strandat 1317.705 kb on + strandat 1317.705 kb on + strandat 1317.706 kb on - strandat 1317.706 kb on - strandat 1317.717 kb on + strandat 1317.717 kb on + strandat 1317.717 kb on + strandat 1317.717 kb on + strandat 1317.717 kb on + strandat 1317.717 kb on + strandat 1317.717 kb on + strandat 1317.718 kb on - strandat 1317.718 kb on - strandat 1317.732 kb on + strandat 1317.732 kb on + strandat 1317.732 kb on + strandat 1317.732 kb on + strandat 1317.733 kb on - strandat 1317.733 kb on - strandat 1317.733 kb on - strandat 1317.733 kb on - strandat 1317.819 kb on + strandat 1317.876 kb on + strandat 1317.876 kb on + strandat 1317.876 kb on + strandat 1317.876 kb on + strandat 1317.876 kb on + strandat 1317.877 kb on - strandat 1317.877 kb on - strandat 1317.877 kb on - strandat 1317.877 kb on - strandat 1317.877 kb on - strandat 1317.879 kb on + strand, within ABZR87_RS06185at 1317.880 kb on - strand, within ABZR87_RS06185at 1317.918 kb on + strand, within ABZR87_RS06185at 1317.918 kb on + strand, within ABZR87_RS06185at 1317.919 kb on - strand, within ABZR87_RS06185at 1318.029 kb on + strand, within ABZR87_RS06185at 1318.029 kb on + strand, within ABZR87_RS06185at 1318.029 kb on + strand, within ABZR87_RS06185at 1318.029 kb on + strand, within ABZR87_RS06185at 1318.030 kb on - strand, within ABZR87_RS06185at 1318.030 kb on - strand, within ABZR87_RS06185at 1318.035 kb on + strand, within ABZR87_RS06185at 1318.036 kb on - strand, within ABZR87_RS06185at 1318.036 kb on - strand, within ABZR87_RS06185at 1318.230 kb on + strand, within ABZR87_RS06185at 1318.230 kb on + strand, within ABZR87_RS06185at 1318.230 kb on + strand, within ABZR87_RS06185at 1318.230 kb on + strand, within ABZR87_RS06185at 1318.301 kb on - strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.359 kb on + strand, within ABZR87_RS06185at 1318.360 kb on - strand, within ABZR87_RS06185at 1318.360 kb on - strand, within ABZR87_RS06185at 1318.360 kb on - strand, within ABZR87_RS06185at 1318.360 kb on - strand, within ABZR87_RS06185at 1318.360 kb on - strand, within ABZR87_RS06185at 1318.360 kb on - strand, within ABZR87_RS06185at 1318.360 kb on - strand, within ABZR87_RS06185at 1318.404 kb on + strand, within ABZR87_RS06185at 1318.405 kb on - strand, within ABZR87_RS06185at 1318.483 kb on - strand, within ABZR87_RS06185at 1318.548 kb on + strand, within ABZR87_RS06185at 1318.548 kb on + strand, within ABZR87_RS06185at 1318.549 kb on - strand, within ABZR87_RS06185at 1318.549 kb on - strand, within ABZR87_RS06185at 1318.565 kb on + strand, within ABZR87_RS06185at 1318.710 kb on + strand, within ABZR87_RS06185at 1318.710 kb on + strand, within ABZR87_RS06185at 1318.710 kb on + strand, within ABZR87_RS06185at 1318.710 kb on + strand, within ABZR87_RS06185at 1318.710 kb on + strand, within ABZR87_RS06185at 1318.711 kb on - strand, within ABZR87_RS06185at 1318.711 kb on - strand, within ABZR87_RS06185at 1318.711 kb on - strand, within ABZR87_RS06185at 1318.711 kb on - strand, within ABZR87_RS06185at 1318.711 kb on - strand, within ABZR87_RS06185at 1318.758 kb on + strand, within ABZR87_RS06185at 1318.834 kb on - strand, within ABZR87_RS06185at 1318.834 kb on - strand, within ABZR87_RS06185at 1318.867 kb on - strand, within ABZR87_RS06185at 1318.867 kb on - strand, within ABZR87_RS06185at 1318.867 kb on - strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.869 kb on + strand, within ABZR87_RS06185at 1318.870 kb on - strand, within ABZR87_RS06185at 1318.870 kb on - strand, within ABZR87_RS06185at 1318.870 kb on - strand, within ABZR87_RS06185at 1318.870 kb on - strand, within ABZR87_RS06185at 1319.032 kb on - strand, within ABZR87_RS06185at 1319.034 kb on + strand, within ABZR87_RS06185at 1319.034 kb on + strand, within ABZR87_RS06185at 1319.035 kb on - strand, within ABZR87_RS06185at 1319.035 kb on - strand, within ABZR87_RS06185at 1319.035 kb on - strand, within ABZR87_RS06185at 1319.035 kb on - strand, within ABZR87_RS06185at 1319.127 kb on + strand, within ABZR87_RS06185at 1319.128 kb on - strand, within ABZR87_RS06185at 1319.169 kb on + strand, within ABZR87_RS06185at 1319.169 kb on + strand, within ABZR87_RS06185at 1319.169 kb on + strand, within ABZR87_RS06185at 1319.169 kb on + strand, within ABZR87_RS06185at 1319.170 kb on - strand, within ABZR87_RS06185at 1319.170 kb on - strand, within ABZR87_RS06185at 1319.170 kb on - strand, within ABZR87_RS06185at 1319.170 kb on - strand, within ABZR87_RS06185at 1319.172 kb on + strand, within ABZR87_RS06185at 1319.173 kb on - strand, within ABZR87_RS06185at 1319.173 kb on - strand, within ABZR87_RS06185at 1319.173 kb on - strand, within ABZR87_RS06185at 1319.323 kb on - strand, within ABZR87_RS06185at 1319.350 kb on - strand, within ABZR87_RS06185at 1319.877 kb on + strandat 1319.877 kb on + strandat 1320.056 kb on + strandat 1320.057 kb on - strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.059 kb on - strandat 1320.059 kb on - strandat 1320.059 kb on - strandat 1320.771 kb on + strand, within ABZR87_RS06190at 1320.771 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.834 kb on - strand, within ABZR87_RS06190

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,316,688 + ABZR87_RS06175 0.70 -0.3
1,316,688 + ABZR87_RS06175 0.70 +0.2
1,316,688 + ABZR87_RS06175 0.70 -0.4
1,316,688 + ABZR87_RS06175 0.70 -0.3
1,316,689 - ABZR87_RS06175 0.71 -0.4
1,316,689 - ABZR87_RS06175 0.71 -0.3
1,317,103 + ABZR87_RS06180 0.29 -0.7
1,317,103 + ABZR87_RS06180 0.29 +0.1
1,317,103 + ABZR87_RS06180 0.29 +0.3
1,317,103 + ABZR87_RS06180 0.29 -2.0
1,317,104 - ABZR87_RS06180 0.29 +0.8
1,317,104 - ABZR87_RS06180 0.29 -0.4
1,317,104 - ABZR87_RS06180 0.29 +0.5
1,317,104 - ABZR87_RS06180 0.29 -0.6
1,317,104 - ABZR87_RS06180 0.29 -0.6
1,317,154 + ABZR87_RS06180 0.36 -0.2
1,317,155 - ABZR87_RS06180 0.36 -0.3
1,317,274 + ABZR87_RS06180 0.51 +0.4
1,317,275 - ABZR87_RS06180 0.51 +0.6
1,317,275 - ABZR87_RS06180 0.51 -0.6
1,317,275 - ABZR87_RS06180 0.51 -0.1
1,317,275 - ABZR87_RS06180 0.51 +0.0
1,317,275 - ABZR87_RS06180 0.51 +0.2
1,317,275 - ABZR87_RS06180 0.51 +0.6
1,317,280 + ABZR87_RS06180 0.52 -1.7
1,317,280 + ABZR87_RS06180 0.52 -0.4
1,317,280 + ABZR87_RS06180 0.52 +0.5
1,317,281 - ABZR87_RS06180 0.52 -0.7
1,317,281 - ABZR87_RS06180 0.52 -0.6
1,317,281 - ABZR87_RS06180 0.52 -0.8
1,317,281 - ABZR87_RS06180 0.52 +0.3
1,317,281 - ABZR87_RS06180 0.52 -0.4
1,317,319 + ABZR87_RS06180 0.57 +1.0
1,317,320 - ABZR87_RS06180 0.57 -0.1
1,317,370 + ABZR87_RS06180 0.64 +0.5
1,317,371 - ABZR87_RS06180 0.64 +0.1
1,317,371 - ABZR87_RS06180 0.64 +0.5
1,317,371 - ABZR87_RS06180 0.64 -0.3
1,317,371 - ABZR87_RS06180 0.64 +0.2
1,317,655 - -1.4
1,317,705 + -0.6
1,317,705 + +1.5
1,317,705 + +0.4
1,317,706 - -0.3
1,317,706 - +0.2
1,317,717 + +1.1
1,317,717 + +0.2
1,317,717 + -0.2
1,317,717 + +1.0
1,317,717 + -1.4
1,317,717 + -0.7
1,317,717 + -0.3
1,317,718 - +0.4
1,317,718 - +0.3
1,317,732 + +0.2
1,317,732 + -0.0
1,317,732 + -0.0
1,317,732 + +0.5
1,317,733 - +1.3
1,317,733 - +0.8
1,317,733 - -0.9
1,317,733 - -2.1
1,317,819 + -0.1
1,317,876 + +0.6
1,317,876 + +0.6
1,317,876 + +1.2
1,317,876 + -0.1
1,317,876 + +0.2
1,317,877 - +0.4
1,317,877 - -1.2
1,317,877 - +0.5
1,317,877 - +0.9
1,317,877 - -0.4
1,317,879 + ABZR87_RS06185 0.10 -0.3
1,317,880 - ABZR87_RS06185 0.10 +0.3
1,317,918 + ABZR87_RS06185 0.12 -0.3
1,317,918 + ABZR87_RS06185 0.12 -2.8
1,317,919 - ABZR87_RS06185 0.12 -0.4
1,318,029 + ABZR87_RS06185 0.17 -0.7
1,318,029 + ABZR87_RS06185 0.17 +1.5
1,318,029 + ABZR87_RS06185 0.17 +0.5
1,318,029 + ABZR87_RS06185 0.17 +0.1
1,318,030 - ABZR87_RS06185 0.17 +0.5
1,318,030 - ABZR87_RS06185 0.17 +0.9
1,318,035 + ABZR87_RS06185 0.17 -0.3
1,318,036 - ABZR87_RS06185 0.17 +0.6
1,318,036 - ABZR87_RS06185 0.17 +0.7
1,318,230 + ABZR87_RS06185 0.25 -0.3
1,318,230 + ABZR87_RS06185 0.25 +0.0
1,318,230 + ABZR87_RS06185 0.25 -0.4
1,318,230 + ABZR87_RS06185 0.25 -0.6
1,318,301 - ABZR87_RS06185 0.29 -0.6
1,318,359 + ABZR87_RS06185 0.31 +0.1
1,318,359 + ABZR87_RS06185 0.31 +0.0
1,318,359 + ABZR87_RS06185 0.31 +0.5
1,318,359 + ABZR87_RS06185 0.31 +0.0
1,318,359 + ABZR87_RS06185 0.31 -0.0
1,318,359 + ABZR87_RS06185 0.31 -2.4
1,318,359 + ABZR87_RS06185 0.31 +0.4
1,318,359 + ABZR87_RS06185 0.31 +0.0
1,318,359 + ABZR87_RS06185 0.31 +1.2
1,318,359 + ABZR87_RS06185 0.31 +1.9
1,318,359 + ABZR87_RS06185 0.31 +0.7
1,318,359 + ABZR87_RS06185 0.31 +1.2
1,318,360 - ABZR87_RS06185 0.31 -0.2
1,318,360 - ABZR87_RS06185 0.31 +0.3
1,318,360 - ABZR87_RS06185 0.31 +0.5
1,318,360 - ABZR87_RS06185 0.31 -0.2
1,318,360 - ABZR87_RS06185 0.31 +1.5
1,318,360 - ABZR87_RS06185 0.31 -0.0
1,318,360 - ABZR87_RS06185 0.31 -0.1
1,318,404 + ABZR87_RS06185 0.33 -0.2
1,318,405 - ABZR87_RS06185 0.33 +0.2
1,318,483 - ABZR87_RS06185 0.37 +0.4
1,318,548 + ABZR87_RS06185 0.39 +0.2
1,318,548 + ABZR87_RS06185 0.39 +0.7
1,318,549 - ABZR87_RS06185 0.39 +1.3
1,318,549 - ABZR87_RS06185 0.39 +1.1
1,318,565 + ABZR87_RS06185 0.40 +0.2
1,318,710 + ABZR87_RS06185 0.46 -0.9
1,318,710 + ABZR87_RS06185 0.46 +0.8
1,318,710 + ABZR87_RS06185 0.46 -0.5
1,318,710 + ABZR87_RS06185 0.46 +0.6
1,318,710 + ABZR87_RS06185 0.46 -0.2
1,318,711 - ABZR87_RS06185 0.47 +0.4
1,318,711 - ABZR87_RS06185 0.47 +0.9
1,318,711 - ABZR87_RS06185 0.47 +0.2
1,318,711 - ABZR87_RS06185 0.47 +0.5
1,318,711 - ABZR87_RS06185 0.47 +0.1
1,318,758 + ABZR87_RS06185 0.49 +0.4
1,318,834 - ABZR87_RS06185 0.52 +1.3
1,318,834 - ABZR87_RS06185 0.52 +2.0
1,318,867 - ABZR87_RS06185 0.53 -0.2
1,318,867 - ABZR87_RS06185 0.53 -0.7
1,318,867 - ABZR87_RS06185 0.53 +1.1
1,318,869 + ABZR87_RS06185 0.53 -0.1
1,318,869 + ABZR87_RS06185 0.53 -0.0
1,318,869 + ABZR87_RS06185 0.53 -0.2
1,318,869 + ABZR87_RS06185 0.53 -0.9
1,318,869 + ABZR87_RS06185 0.53 +0.5
1,318,869 + ABZR87_RS06185 0.53 +0.6
1,318,869 + ABZR87_RS06185 0.53 -1.1
1,318,869 + ABZR87_RS06185 0.53 +0.3
1,318,869 + ABZR87_RS06185 0.53 -1.3
1,318,869 + ABZR87_RS06185 0.53 -1.4
1,318,869 + ABZR87_RS06185 0.53 -0.1
1,318,870 - ABZR87_RS06185 0.54 -0.0
1,318,870 - ABZR87_RS06185 0.54 +0.7
1,318,870 - ABZR87_RS06185 0.54 -0.4
1,318,870 - ABZR87_RS06185 0.54 -0.8
1,319,032 - ABZR87_RS06185 0.61 -2.3
1,319,034 + ABZR87_RS06185 0.61 +0.4
1,319,034 + ABZR87_RS06185 0.61 +0.5
1,319,035 - ABZR87_RS06185 0.61 -0.3
1,319,035 - ABZR87_RS06185 0.61 -0.4
1,319,035 - ABZR87_RS06185 0.61 +0.1
1,319,035 - ABZR87_RS06185 0.61 +0.0
1,319,127 + ABZR87_RS06185 0.65 +0.8
1,319,128 - ABZR87_RS06185 0.65 -0.2
1,319,169 + ABZR87_RS06185 0.67 -0.1
1,319,169 + ABZR87_RS06185 0.67 -0.6
1,319,169 + ABZR87_RS06185 0.67 +0.2
1,319,169 + ABZR87_RS06185 0.67 +0.5
1,319,170 - ABZR87_RS06185 0.67 -0.4
1,319,170 - ABZR87_RS06185 0.67 +0.1
1,319,170 - ABZR87_RS06185 0.67 -0.2
1,319,170 - ABZR87_RS06185 0.67 +0.6
1,319,172 + ABZR87_RS06185 0.67 -0.6
1,319,173 - ABZR87_RS06185 0.67 +0.6
1,319,173 - ABZR87_RS06185 0.67 +0.9
1,319,173 - ABZR87_RS06185 0.67 -0.4
1,319,323 - ABZR87_RS06185 0.73 -0.5
1,319,350 - ABZR87_RS06185 0.75 +1.2
1,319,877 + +0.2
1,319,877 + +0.8
1,320,056 + +0.1
1,320,057 - -0.1
1,320,058 + -1.2
1,320,058 + +1.1
1,320,058 + +0.3
1,320,058 + -0.4
1,320,058 + +0.4
1,320,058 + +0.9
1,320,058 + +0.2
1,320,058 + +0.0
1,320,059 - -0.5
1,320,059 - -1.0
1,320,059 - +0.2
1,320,771 + ABZR87_RS06190 0.73 +2.8
1,320,771 + ABZR87_RS06190 0.73 +0.9
1,320,833 + ABZR87_RS06190 0.81 +1.9
1,320,833 + ABZR87_RS06190 0.81 -0.1
1,320,833 + ABZR87_RS06190 0.81 +0.3
1,320,833 + ABZR87_RS06190 0.81 +0.5
1,320,834 - ABZR87_RS06190 0.81 -0.1

Or see this region's nucleotide sequence