Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2781

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2780 and Psyr_2781 are separated by 10 nucleotidesPsyr_2781 and Psyr_2782 are separated by 62 nucleotidesPsyr_2782 and Psyr_2783 are separated by 3 nucleotides Psyr_2780: Psyr_2780 - Phage tail tape measure protein lambda, at 3,364,992 to 3,368,477 _2780 Psyr_2781: Psyr_2781 - hypothetical protein, at 3,368,488 to 3,368,736 _2781 Psyr_2782: Psyr_2782 - hypothetical protein, at 3,368,799 to 3,369,182 _2782 Psyr_2783: Psyr_2783 - conserved hypothetical protein, at 3,369,186 to 3,369,842 _2783 Position (kb) 3368 3369Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3367.605 kb on + strand, within Psyr_2780at 3367.605 kb on + strand, within Psyr_2780at 3367.605 kb on + strand, within Psyr_2780at 3367.605 kb on + strand, within Psyr_2780at 3367.606 kb on - strand, within Psyr_2780at 3367.606 kb on - strand, within Psyr_2780at 3367.606 kb on - strand, within Psyr_2780at 3367.647 kb on + strand, within Psyr_2780at 3367.727 kb on + strand, within Psyr_2780at 3367.728 kb on - strand, within Psyr_2780at 3367.728 kb on - strand, within Psyr_2780at 3367.728 kb on - strand, within Psyr_2780at 3367.767 kb on + strand, within Psyr_2780at 3367.767 kb on + strand, within Psyr_2780at 3367.767 kb on + strand, within Psyr_2780at 3367.767 kb on + strand, within Psyr_2780at 3367.768 kb on - strand, within Psyr_2780at 3367.768 kb on - strand, within Psyr_2780at 3367.768 kb on - strand, within Psyr_2780at 3367.768 kb on - strand, within Psyr_2780at 3367.768 kb on - strand, within Psyr_2780at 3367.768 kb on - strand, within Psyr_2780at 3367.768 kb on - strand, within Psyr_2780at 3367.922 kb on + strand, within Psyr_2780at 3367.951 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.003 kb on + strand, within Psyr_2780at 3368.004 kb on - strand, within Psyr_2780at 3368.210 kb on + strandat 3368.210 kb on + strandat 3368.211 kb on - strandat 3368.557 kb on + strand, within Psyr_2781at 3368.557 kb on + strand, within Psyr_2781at 3368.558 kb on - strand, within Psyr_2781at 3368.609 kb on + strand, within Psyr_2781at 3368.610 kb on - strand, within Psyr_2781at 3368.777 kb on + strandat 3368.777 kb on + strandat 3368.837 kb on - strandat 3368.980 kb on - strand, within Psyr_2782at 3369.039 kb on - strand, within Psyr_2782at 3369.039 kb on - strand, within Psyr_2782at 3369.080 kb on + strand, within Psyr_2782at 3369.080 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.082 kb on + strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.083 kb on - strand, within Psyr_2782at 3369.295 kb on + strand, within Psyr_2783at 3369.296 kb on - strand, within Psyr_2783at 3369.304 kb on + strand, within Psyr_2783at 3369.304 kb on + strand, within Psyr_2783at 3369.305 kb on - strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.388 kb on + strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783at 3369.389 kb on - strand, within Psyr_2783

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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3,367,605 + Psyr_2780 0.75 -0.7
3,367,605 + Psyr_2780 0.75 +0.4
3,367,605 + Psyr_2780 0.75 -1.3
3,367,605 + Psyr_2780 0.75 -0.9
3,367,606 - Psyr_2780 0.75 +3.8
3,367,606 - Psyr_2780 0.75 -0.7
3,367,606 - Psyr_2780 0.75 +0.5
3,367,647 + Psyr_2780 0.76 -0.7
3,367,727 + Psyr_2780 0.78 -0.8
3,367,728 - Psyr_2780 0.78 +0.6
3,367,728 - Psyr_2780 0.78 +1.1
3,367,728 - Psyr_2780 0.78 -0.6
3,367,767 + Psyr_2780 0.80 +0.2
3,367,767 + Psyr_2780 0.80 -0.6
3,367,767 + Psyr_2780 0.80 -0.7
3,367,767 + Psyr_2780 0.80 -1.8
3,367,768 - Psyr_2780 0.80 +0.2
3,367,768 - Psyr_2780 0.80 -0.7
3,367,768 - Psyr_2780 0.80 +0.7
3,367,768 - Psyr_2780 0.80 -1.4
3,367,768 - Psyr_2780 0.80 +1.3
3,367,768 - Psyr_2780 0.80 -0.2
3,367,768 - Psyr_2780 0.80 -0.4
3,367,922 + Psyr_2780 0.84 +1.1
3,367,951 + Psyr_2780 0.85 +1.0
3,368,003 + Psyr_2780 0.86 +0.4
3,368,003 + Psyr_2780 0.86 +0.4
3,368,003 + Psyr_2780 0.86 -0.6
3,368,003 + Psyr_2780 0.86 +0.5
3,368,004 - Psyr_2780 0.86 -1.5
3,368,210 + +1.8
3,368,210 + -0.5
3,368,211 - +0.6
3,368,557 + Psyr_2781 0.28 -0.1
3,368,557 + Psyr_2781 0.28 +1.0
3,368,558 - Psyr_2781 0.28 +1.2
3,368,609 + Psyr_2781 0.49 +1.0
3,368,610 - Psyr_2781 0.49 +0.8
3,368,777 + -1.5
3,368,777 + -0.3
3,368,837 - +0.5
3,368,980 - Psyr_2782 0.47 +0.7
3,369,039 - Psyr_2782 0.62 -2.1
3,369,039 - Psyr_2782 0.62 -2.0
3,369,080 + Psyr_2782 0.73 +0.7
3,369,080 + Psyr_2782 0.73 +0.1
3,369,082 + Psyr_2782 0.74 -3.1
3,369,082 + Psyr_2782 0.74 -2.1
3,369,082 + Psyr_2782 0.74 +0.1
3,369,082 + Psyr_2782 0.74 +1.2
3,369,082 + Psyr_2782 0.74 +0.5
3,369,082 + Psyr_2782 0.74 -1.8
3,369,082 + Psyr_2782 0.74 -1.2
3,369,082 + Psyr_2782 0.74 -1.1
3,369,082 + Psyr_2782 0.74 -2.5
3,369,082 + Psyr_2782 0.74 -1.7
3,369,082 + Psyr_2782 0.74 -1.0
3,369,082 + Psyr_2782 0.74 -0.4
3,369,083 - Psyr_2782 0.74 -0.5
3,369,083 - Psyr_2782 0.74 -1.1
3,369,083 - Psyr_2782 0.74 +1.3
3,369,083 - Psyr_2782 0.74 +0.7
3,369,083 - Psyr_2782 0.74 -0.1
3,369,083 - Psyr_2782 0.74 -0.4
3,369,083 - Psyr_2782 0.74 -1.4
3,369,295 + Psyr_2783 0.17 +1.1
3,369,296 - Psyr_2783 0.17 -1.0
3,369,304 + Psyr_2783 0.18 +0.2
3,369,304 + Psyr_2783 0.18 -0.8
3,369,305 - Psyr_2783 0.18 +2.3
3,369,388 + Psyr_2783 0.31 +0.1
3,369,388 + Psyr_2783 0.31 +0.1
3,369,388 + Psyr_2783 0.31 +0.0
3,369,389 - Psyr_2783 0.31 +0.2
3,369,389 - Psyr_2783 0.31 -0.2
3,369,389 - Psyr_2783 0.31 +0.9
3,369,389 - Psyr_2783 0.31 +0.3

Or see this region's nucleotide sequence