Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2148

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,504,165	+		Psyr_2146	0.43	-0.7
2,504,165	+		Psyr_2146	0.43	+1.3
2,504,165	+		Psyr_2146	0.43	-1.2
2,504,165	+		Psyr_2146	0.43	-2.1
2,504,166	-		Psyr_2146	0.43	+2.3
2,504,166	-		Psyr_2146	0.43	+2.1
2,504,169	+		Psyr_2146	0.43	+0.1
2,504,169	+		Psyr_2146	0.43	-1.0
2,504,169	+		Psyr_2146	0.43	-0.7
2,504,170	-		Psyr_2146	0.43	+1.4
2,504,220	+		Psyr_2146	0.50	+0.2
2,504,220	+		Psyr_2146	0.50	+1.1
2,504,220	+		Psyr_2146	0.50	-0.4
2,504,220	+		Psyr_2146	0.50	+0.1
2,504,220	+		Psyr_2146	0.50	-0.3
2,504,220	+		Psyr_2146	0.50	-0.6
2,504,220	+		Psyr_2146	0.50	-1.2
2,504,220	+		Psyr_2146	0.50	-0.7
2,504,221	-		Psyr_2146	0.50	+0.1
2,504,221	-		Psyr_2146	0.50	-0.8
2,504,221	-		Psyr_2146	0.50	-0.7
2,504,221	-		Psyr_2146	0.50	-1.8
2,504,326	+		Psyr_2146	0.63	+0.6
2,504,326	+		Psyr_2146	0.63	+0.5
2,504,361	+		Psyr_2146	0.67	+0.1
2,504,361	+		Psyr_2146	0.67	-1.3
2,504,361	+		Psyr_2146	0.67	-1.5
2,504,362	-		Psyr_2146	0.68	-0.5
2,504,362	-		Psyr_2146	0.68	-0.4
2,504,362	-		Psyr_2146	0.68	-1.6
2,504,388	+		Psyr_2146	0.71	+0.9
2,504,388	+		Psyr_2146	0.71	-0.6
2,504,388	+		Psyr_2146	0.71	+0.1
2,504,435	+		Psyr_2146	0.77	+1.9
2,504,436	-		Psyr_2146	0.77	+1.1
2,504,540	+				+0.0
2,504,540	+				+0.5
2,504,540	+				-1.3
2,504,540	+				-0.9
2,504,541	-				+0.4
2,504,541	-				-3.1
2,504,639	+				-1.4
2,504,639	+				+1.7
2,504,639	+				+0.6
2,504,639	+				+1.0
2,504,639	+				+1.0
2,504,639	+				-1.2
2,504,639	+				-1.5
2,504,639	+				-0.1
2,504,639	+				+0.1
2,504,639	+				+1.1
2,504,639	+				-0.9
2,504,639	+				+2.1
2,504,639	+				-0.2
2,504,639	+				+0.5
2,504,639	+				+0.9
2,504,640	-				-0.5
2,504,640	-				-0.1
2,504,640	-				-0.5
2,504,640	-				-1.4
2,504,640	-				-0.1
2,504,640	-				-2.2
2,504,640	-				-0.3
2,504,640	-				+0.6
2,504,640	-				+0.1
2,504,640	-				+0.5
2,504,640	-				+0.3
2,504,640	-				+2.7
2,504,640	-				-0.3
2,504,640	-				-1.3
2,504,640	-				+1.6
2,504,640	-				+1.5
2,504,640	-				+1.1
2,504,640	-				-1.6
2,504,640	-				+2.4
2,504,640	-				+3.1
2,504,640	-				-1.4
2,504,641	+				-0.5
2,504,641	+				-0.6
2,504,642	-				-0.1
2,504,642	-				-0.9
2,504,783	+		Psyr_2147	0.38	+0.4
2,504,784	-		Psyr_2147	0.38	-2.5
2,504,784	-		Psyr_2147	0.38	+0.9
2,504,784	-		Psyr_2147	0.38	-0.5
2,504,785	+		Psyr_2147	0.39	+0.4
2,504,785	+		Psyr_2147	0.39	-0.2
2,504,785	+		Psyr_2147	0.39	-0.2
2,504,785	+		Psyr_2147	0.39	+0.9
2,504,785	+		Psyr_2147	0.39	-1.8
2,504,785	+		Psyr_2147	0.39	-0.2
2,504,786	-		Psyr_2147	0.39	-0.4
2,504,786	-		Psyr_2147	0.39	+0.4
2,504,786	-		Psyr_2147	0.39	-0.1
2,504,786	-		Psyr_2147	0.39	+1.0
2,504,786	-		Psyr_2147	0.39	+0.1
2,504,877	+		Psyr_2147	0.78	+1.4
2,504,878	-		Psyr_2147	0.78	-0.3
2,504,955	+				+0.0
2,504,974	+				-0.5
2,504,974	+				+1.3
2,504,974	+				-0.2
2,504,974	+				+1.9
2,504,975	-				-1.7
2,504,975	-				-1.6
2,504,975	-				-0.9
2,504,975	-				-2.6
2,504,975	-				+0.6
2,505,001	-				+0.5
2,505,054	-				-0.7
2,505,121	+				-1.5
2,505,121	+				+0.2
2,505,122	-				+0.7
2,505,122	-				-0.5
2,505,155	+				+3.6
2,505,156	-				+1.1
2,505,156	-				-0.6
2,505,274	+		Psyr_2148	0.18	-0.9
2,505,310	+		Psyr_2148	0.23	+1.0
2,505,310	+		Psyr_2148	0.23	+0.9
2,505,311	-		Psyr_2148	0.23	-2.1
2,505,311	-		Psyr_2148	0.23	+0.9
2,505,325	+		Psyr_2148	0.25	-0.7
2,505,325	+		Psyr_2148	0.25	+1.4
2,505,325	+		Psyr_2148	0.25	+0.9
2,505,325	+		Psyr_2148	0.25	-2.0
2,505,325	+		Psyr_2148	0.25	-1.2
2,505,325	+		Psyr_2148	0.25	-0.6
2,505,326	-		Psyr_2148	0.25	+1.8
2,505,326	-		Psyr_2148	0.25	+0.9
2,505,326	-		Psyr_2148	0.25	+2.1
2,505,326	-		Psyr_2148	0.25	+3.1
2,505,326	-		Psyr_2148	0.25	+1.5
2,505,326	-		Psyr_2148	0.25	+1.6
2,505,331	+		Psyr_2148	0.26	-1.0
2,505,331	+		Psyr_2148	0.26	-0.2
2,505,498	-		Psyr_2148	0.50	+0.3
2,505,498	-		Psyr_2148	0.50	-0.2
2,505,623	+		Psyr_2148	0.67	+0.2
2,505,659	-		Psyr_2148	0.73	-0.6
2,505,694	+		Psyr_2148	0.77	+2.1
2,505,694	+		Psyr_2148	0.77	+0.4
2,505,695	-		Psyr_2148	0.78	+0.4
2,505,695	-		Psyr_2148	0.78	+1.0
2,505,709	+		Psyr_2148	0.80	-2.1
2,505,733	+		Psyr_2148	0.83	-1.7
2,505,734	-		Psyr_2148	0.83	-0.1
2,505,734	-		Psyr_2148	0.83	+0.9
2,505,734	-		Psyr_2148	0.83	+0.0
2,505,734	-		Psyr_2148	0.83	+0.0
2,505,937	+		Psyr_2149	0.32	-1.2
2,506,175	+				-1.9
2,506,175	+				+2.7
2,506,175	+				-0.2
2,506,175	+				+1.7
2,506,175	+				+0.4
2,506,175	+				-2.3
2,506,175	+				+0.0
2,506,175	+				-1.1
2,506,175	+				+1.1
2,506,175	+				+0.8
2,506,175	+				-1.3
2,506,176	-				+1.5
2,506,176	-				+0.4
2,506,176	-				-3.5
2,506,176	-				+1.1
2,506,176	-				-0.3
2,506,176	-				+0.1
2,506,176	-				-0.8
2,506,176	-				-2.2
2,506,176	-				-0.6
2,506,176	-				-0.2
2,506,176	-				-0.8
2,506,176	-				+2.1
2,506,176	-				+2.6
2,506,176	-				+0.7
2,506,179	+				+0.6
2,506,179	+				+2.1
2,506,179	+				+0.2
2,506,179	+				+1.1
2,506,179	+				-1.2
2,506,179	+				-0.5
2,506,180	-				-1.2
2,506,180	-				+1.4
2,506,180	-				-0.7
2,506,180	-				-0.9
2,506,180	-				+0.5
2,506,180	-				+1.4
2,506,185	-				-1.1
2,506,251	-				-0.4
2,506,347	+		Psyr_2150	0.45	-0.9
2,506,347	+		Psyr_2150	0.45	-0.8
2,506,361	+		Psyr_2150	0.52	-1.1
2,506,361	+		Psyr_2150	0.52	+0.5
2,506,362	-		Psyr_2150	0.52	-2.1
2,506,406	+		Psyr_2150	0.72	-0.8
2,506,528	-				+3.1
2,506,532	-				+2.1
2,506,639	-				-0.1
2,506,639	-				-2.6
2,506,744	+				-0.8