Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1779

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,027,601	+		Psyr_1778	0.74	+0.8
2,027,622	+		Psyr_1778	0.74	+2.0
2,027,622	+		Psyr_1778	0.74	+0.4
2,027,632	+		Psyr_1778	0.75	+1.1
2,027,632	+		Psyr_1778	0.75	-1.0
2,027,633	-		Psyr_1778	0.75	+0.2
2,027,633	-		Psyr_1778	0.75	-0.9
2,027,713	+		Psyr_1778	0.77	-0.8
2,027,713	+		Psyr_1778	0.77	+0.8
2,027,714	-		Psyr_1778	0.77	-0.8
2,027,716	-		Psyr_1778	0.78	-0.5
2,027,795	-		Psyr_1778	0.80	+0.4
2,027,987	-		Psyr_1778	0.87	+0.6
2,028,309	-				+1.1
2,028,419	+				-2.4
2,028,419	+				-0.3
2,028,419	+				-0.1
2,028,420	-				-0.8
2,028,521	-		Psyr_1779	0.34	+1.0
2,028,521	-		Psyr_1779	0.34	+0.6
2,028,521	-		Psyr_1779	0.34	+0.2
2,028,773	+				+0.1
2,028,773	+				-0.5
2,028,773	+				-0.6
2,028,774	-				-1.3
2,028,871	+				+2.3
2,028,871	+				-0.4
2,028,871	+				+0.7
2,028,871	+				-1.0
2,028,871	+				+1.4
2,028,871	+				-0.9
2,028,872	-				+0.3
2,028,872	-				-0.3
2,028,872	-				-0.4
2,028,872	-				-1.8
2,028,872	-				+1.3
2,028,872	-				+0.3
2,028,872	-				-1.0
2,028,886	-				-0.5
2,028,899	-				+0.5
2,028,992	+		Psyr_1780	0.19	+1.5
2,029,112	+		Psyr_1780	0.38	-1.8
2,029,113	-		Psyr_1780	0.38	-0.9
2,029,113	-		Psyr_1780	0.38	+3.6
2,029,452	+				+0.1
2,029,452	+				+1.1
2,029,453	-				+1.2
2,029,523	+				+0.1
2,029,524	-				-0.4
2,029,583	+				+1.6
2,029,586	+				+0.6
2,029,587	-				-2.5
2,029,679	-				-0.5
2,029,679	-				-1.3