Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03885

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03880 and ABZR87_RS03885 are separated by 345 nucleotidesABZR87_RS03885 and ABZR87_RS03890 are separated by 43 nucleotides ABZR87_RS03880: ABZR87_RS03880 - LysR family transcriptional regulator, at 800,161 to 801,072 _RS03880 ABZR87_RS03885: ABZR87_RS03885 - glyoxylate carboligase, at 801,418 to 803,193 _RS03885 ABZR87_RS03890: ABZR87_RS03890 - hydroxypyruvate isomerase, at 803,237 to 804,019 _RS03890 Position (kb) 801 802 803 804Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 800.465 kb on + strand, within ABZR87_RS03880at 800.466 kb on - strand, within ABZR87_RS03880at 800.553 kb on + strand, within ABZR87_RS03880at 800.554 kb on - strand, within ABZR87_RS03880at 800.561 kb on + strand, within ABZR87_RS03880at 800.561 kb on + strand, within ABZR87_RS03880at 800.561 kb on + strand, within ABZR87_RS03880at 800.561 kb on + strand, within ABZR87_RS03880at 800.561 kb on + strand, within ABZR87_RS03880at 800.562 kb on - strand, within ABZR87_RS03880at 800.562 kb on - strand, within ABZR87_RS03880at 800.562 kb on - strand, within ABZR87_RS03880at 800.657 kb on + strand, within ABZR87_RS03880at 800.657 kb on + strand, within ABZR87_RS03880at 800.658 kb on - strand, within ABZR87_RS03880at 800.658 kb on - strand, within ABZR87_RS03880at 800.658 kb on - strand, within ABZR87_RS03880at 800.658 kb on - strand, within ABZR87_RS03880at 801.106 kb on + strandat 801.107 kb on - strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.146 kb on + strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.147 kb on - strandat 801.212 kb on + strandat 801.370 kb on + strandat 801.387 kb on + strandat 801.387 kb on + strandat 801.388 kb on - strandat 801.388 kb on - strandat 801.504 kb on + strandat 801.505 kb on - strandat 801.517 kb on + strandat 801.517 kb on + strandat 801.517 kb on + strandat 801.517 kb on + strandat 801.517 kb on + strandat 801.518 kb on - strandat 801.518 kb on - strandat 801.518 kb on - strandat 801.518 kb on - strandat 801.518 kb on - strandat 801.518 kb on - strandat 801.518 kb on - strandat 801.586 kb on - strandat 801.586 kb on - strandat 801.598 kb on + strand, within ABZR87_RS03885at 801.598 kb on + strand, within ABZR87_RS03885at 801.598 kb on + strand, within ABZR87_RS03885at 801.598 kb on + strand, within ABZR87_RS03885at 801.599 kb on - strand, within ABZR87_RS03885at 801.599 kb on - strand, within ABZR87_RS03885at 801.680 kb on - strand, within ABZR87_RS03885at 801.745 kb on + strand, within ABZR87_RS03885at 801.745 kb on + strand, within ABZR87_RS03885at 801.745 kb on + strand, within ABZR87_RS03885at 801.745 kb on + strand, within ABZR87_RS03885at 801.745 kb on + strand, within ABZR87_RS03885at 801.746 kb on - strand, within ABZR87_RS03885at 801.746 kb on - strand, within ABZR87_RS03885at 801.746 kb on - strand, within ABZR87_RS03885at 801.746 kb on - strand, within ABZR87_RS03885at 801.746 kb on - strand, within ABZR87_RS03885at 801.746 kb on - strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.949 kb on + strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.950 kb on - strand, within ABZR87_RS03885at 801.951 kb on + strand, within ABZR87_RS03885at 801.951 kb on + strand, within ABZR87_RS03885at 801.951 kb on + strand, within ABZR87_RS03885at 801.951 kb on + strand, within ABZR87_RS03885at 801.952 kb on - strand, within ABZR87_RS03885at 801.952 kb on - strand, within ABZR87_RS03885at 801.952 kb on - strand, within ABZR87_RS03885at 801.952 kb on - strand, within ABZR87_RS03885at 801.967 kb on + strand, within ABZR87_RS03885at 801.968 kb on - strand, within ABZR87_RS03885at 801.968 kb on - strand, within ABZR87_RS03885at 802.291 kb on + strand, within ABZR87_RS03885at 802.291 kb on + strand, within ABZR87_RS03885at 802.291 kb on + strand, within ABZR87_RS03885at 802.292 kb on - strand, within ABZR87_RS03885at 802.292 kb on - strand, within ABZR87_RS03885at 802.561 kb on + strand, within ABZR87_RS03885at 802.561 kb on + strand, within ABZR87_RS03885at 802.561 kb on + strand, within ABZR87_RS03885at 802.561 kb on + strand, within ABZR87_RS03885at 802.561 kb on + strand, within ABZR87_RS03885at 802.561 kb on + strand, within ABZR87_RS03885at 802.561 kb on + strand, within ABZR87_RS03885at 802.562 kb on - strand, within ABZR87_RS03885at 802.582 kb on + strand, within ABZR87_RS03885at 802.582 kb on + strand, within ABZR87_RS03885at 802.583 kb on - strand, within ABZR87_RS03885at 802.583 kb on - strand, within ABZR87_RS03885at 802.593 kb on + strand, within ABZR87_RS03885at 802.756 kb on + strand, within ABZR87_RS03885at 802.756 kb on + strand, within ABZR87_RS03885at 802.756 kb on + strand, within ABZR87_RS03885at 802.756 kb on + strand, within ABZR87_RS03885at 802.756 kb on + strand, within ABZR87_RS03885at 802.756 kb on + strand, within ABZR87_RS03885at 802.757 kb on - strand, within ABZR87_RS03885at 802.757 kb on - strand, within ABZR87_RS03885at 802.757 kb on - strand, within ABZR87_RS03885at 802.757 kb on - strand, within ABZR87_RS03885at 802.813 kb on + strand, within ABZR87_RS03885at 802.813 kb on + strand, within ABZR87_RS03885at 802.813 kb on + strand, within ABZR87_RS03885at 802.813 kb on + strand, within ABZR87_RS03885at 802.813 kb on + strand, within ABZR87_RS03885at 802.814 kb on - strand, within ABZR87_RS03885at 802.814 kb on - strand, within ABZR87_RS03885at 802.814 kb on - strand, within ABZR87_RS03885at 802.814 kb on - strand, within ABZR87_RS03885at 802.814 kb on - strand, within ABZR87_RS03885at 802.840 kb on + strand, within ABZR87_RS03885at 802.840 kb on + strand, within ABZR87_RS03885at 802.841 kb on - strand, within ABZR87_RS03885at 802.841 kb on - strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.885 kb on + strand, within ABZR87_RS03885at 802.886 kb on - strand, within ABZR87_RS03885at 802.886 kb on - strand, within ABZR87_RS03885at 802.886 kb on - strand, within ABZR87_RS03885at 803.192 kb on - strandat 803.192 kb on - strandat 803.223 kb on + strandat 803.223 kb on + strandat 803.224 kb on - strandat 803.224 kb on - strandat 803.224 kb on - strandat 803.224 kb on - strandat 803.224 kb on - strandat 803.224 kb on - strandat 803.348 kb on + strand, within ABZR87_RS03890at 803.349 kb on - strand, within ABZR87_RS03890at 803.452 kb on + strand, within ABZR87_RS03890at 803.514 kb on - strand, within ABZR87_RS03890at 803.696 kb on + strand, within ABZR87_RS03890at 803.697 kb on - strand, within ABZR87_RS03890at 803.697 kb on - strand, within ABZR87_RS03890at 803.697 kb on - strand, within ABZR87_RS03890at 803.756 kb on + strand, within ABZR87_RS03890at 803.757 kb on - strand, within ABZR87_RS03890at 803.765 kb on + strand, within ABZR87_RS03890at 803.765 kb on + strand, within ABZR87_RS03890at 803.765 kb on + strand, within ABZR87_RS03890at 803.766 kb on - strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.806 kb on + strand, within ABZR87_RS03890at 803.807 kb on - strand, within ABZR87_RS03890at 803.897 kb on + strand, within ABZR87_RS03890at 803.897 kb on + strand, within ABZR87_RS03890at 803.933 kb on + strand, within ABZR87_RS03890at 803.934 kb on - strand, within ABZR87_RS03890at 803.957 kb on + strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.965 kb on + strandat 803.966 kb on - strandat 803.966 kb on - strandat 803.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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800,465 + ABZR87_RS03880 0.33 -1.0
800,466 - ABZR87_RS03880 0.33 +3.0
800,553 + ABZR87_RS03880 0.43 +3.6
800,554 - ABZR87_RS03880 0.43 -0.6
800,561 + ABZR87_RS03880 0.44 +0.1
800,561 + ABZR87_RS03880 0.44 -2.8
800,561 + ABZR87_RS03880 0.44 -1.4
800,561 + ABZR87_RS03880 0.44 +0.3
800,561 + ABZR87_RS03880 0.44 -1.7
800,562 - ABZR87_RS03880 0.44 -0.9
800,562 - ABZR87_RS03880 0.44 +0.2
800,562 - ABZR87_RS03880 0.44 -1.8
800,657 + ABZR87_RS03880 0.54 -0.8
800,657 + ABZR87_RS03880 0.54 -1.7
800,658 - ABZR87_RS03880 0.54 -0.2
800,658 - ABZR87_RS03880 0.54 -2.5
800,658 - ABZR87_RS03880 0.54 +0.6
800,658 - ABZR87_RS03880 0.54 -2.1
801,106 + +0.9
801,107 - +0.8
801,146 + +0.5
801,146 + +2.2
801,146 + +0.4
801,146 + -0.1
801,146 + -1.9
801,146 + -0.3
801,146 + -4.1
801,146 + -1.7
801,146 + +0.9
801,147 - +1.1
801,147 - -1.5
801,147 - +0.6
801,147 - -2.2
801,147 - -1.5
801,147 - +0.4
801,147 - +1.3
801,147 - +0.6
801,147 - -0.5
801,147 - -2.0
801,212 + -1.6
801,370 + -0.5
801,387 + -0.6
801,387 + -1.0
801,388 - +2.5
801,388 - -1.1
801,504 + +2.8
801,505 - -1.5
801,517 + -0.0
801,517 + -3.0
801,517 + -0.4
801,517 + +0.5
801,517 + +0.1
801,518 - -1.8
801,518 - -0.7
801,518 - +1.4
801,518 - -0.7
801,518 - +1.5
801,518 - +0.8
801,518 - -0.7
801,586 - -0.5
801,586 - +0.7
801,598 + ABZR87_RS03885 0.10 -4.0
801,598 + ABZR87_RS03885 0.10 -0.5
801,598 + ABZR87_RS03885 0.10 -2.0
801,598 + ABZR87_RS03885 0.10 +0.2
801,599 - ABZR87_RS03885 0.10 -2.0
801,599 - ABZR87_RS03885 0.10 +0.2
801,680 - ABZR87_RS03885 0.15 -2.7
801,745 + ABZR87_RS03885 0.18 -0.8
801,745 + ABZR87_RS03885 0.18 +4.1
801,745 + ABZR87_RS03885 0.18 +0.0
801,745 + ABZR87_RS03885 0.18 -1.1
801,745 + ABZR87_RS03885 0.18 -2.8
801,746 - ABZR87_RS03885 0.18 +0.6
801,746 - ABZR87_RS03885 0.18 +1.3
801,746 - ABZR87_RS03885 0.18 -1.1
801,746 - ABZR87_RS03885 0.18 -2.2
801,746 - ABZR87_RS03885 0.18 +1.5
801,746 - ABZR87_RS03885 0.18 -3.4
801,949 + ABZR87_RS03885 0.30 -0.8
801,949 + ABZR87_RS03885 0.30 -1.5
801,949 + ABZR87_RS03885 0.30 -0.4
801,949 + ABZR87_RS03885 0.30 -3.2
801,949 + ABZR87_RS03885 0.30 -2.1
801,949 + ABZR87_RS03885 0.30 +0.1
801,949 + ABZR87_RS03885 0.30 -0.7
801,949 + ABZR87_RS03885 0.30 -2.0
801,949 + ABZR87_RS03885 0.30 +1.0
801,949 + ABZR87_RS03885 0.30 +0.8
801,949 + ABZR87_RS03885 0.30 -1.4
801,949 + ABZR87_RS03885 0.30 +1.4
801,950 - ABZR87_RS03885 0.30 -0.4
801,950 - ABZR87_RS03885 0.30 -0.0
801,950 - ABZR87_RS03885 0.30 -0.5
801,950 - ABZR87_RS03885 0.30 -0.2
801,950 - ABZR87_RS03885 0.30 +0.8
801,950 - ABZR87_RS03885 0.30 -1.0
801,950 - ABZR87_RS03885 0.30 -1.4
801,950 - ABZR87_RS03885 0.30 -0.4
801,950 - ABZR87_RS03885 0.30 +0.1
801,950 - ABZR87_RS03885 0.30 -1.2
801,950 - ABZR87_RS03885 0.30 -1.1
801,950 - ABZR87_RS03885 0.30 +0.4
801,950 - ABZR87_RS03885 0.30 -0.5
801,950 - ABZR87_RS03885 0.30 +2.1
801,950 - ABZR87_RS03885 0.30 +2.2
801,950 - ABZR87_RS03885 0.30 +1.2
801,950 - ABZR87_RS03885 0.30 +1.1
801,950 - ABZR87_RS03885 0.30 -0.0
801,950 - ABZR87_RS03885 0.30 +0.2
801,950 - ABZR87_RS03885 0.30 +0.8
801,950 - ABZR87_RS03885 0.30 -2.8
801,950 - ABZR87_RS03885 0.30 -0.4
801,951 + ABZR87_RS03885 0.30 +1.2
801,951 + ABZR87_RS03885 0.30 -0.5
801,951 + ABZR87_RS03885 0.30 +1.7
801,951 + ABZR87_RS03885 0.30 +1.6
801,952 - ABZR87_RS03885 0.30 +1.2
801,952 - ABZR87_RS03885 0.30 +1.2
801,952 - ABZR87_RS03885 0.30 -3.0
801,952 - ABZR87_RS03885 0.30 -1.2
801,967 + ABZR87_RS03885 0.31 -3.5
801,968 - ABZR87_RS03885 0.31 +2.2
801,968 - ABZR87_RS03885 0.31 -3.5
802,291 + ABZR87_RS03885 0.49 -0.0
802,291 + ABZR87_RS03885 0.49 -0.4
802,291 + ABZR87_RS03885 0.49 +0.8
802,292 - ABZR87_RS03885 0.49 +0.8
802,292 - ABZR87_RS03885 0.49 -1.0
802,561 + ABZR87_RS03885 0.64 -3.1
802,561 + ABZR87_RS03885 0.64 -0.1
802,561 + ABZR87_RS03885 0.64 -2.4
802,561 + ABZR87_RS03885 0.64 +0.2
802,561 + ABZR87_RS03885 0.64 +0.1
802,561 + ABZR87_RS03885 0.64 -1.7
802,561 + ABZR87_RS03885 0.64 +0.7
802,562 - ABZR87_RS03885 0.64 +0.9
802,582 + ABZR87_RS03885 0.66 -2.5
802,582 + ABZR87_RS03885 0.66 +2.1
802,583 - ABZR87_RS03885 0.66 +0.1
802,583 - ABZR87_RS03885 0.66 -2.8
802,593 + ABZR87_RS03885 0.66 +2.7
802,756 + ABZR87_RS03885 0.75 +0.6
802,756 + ABZR87_RS03885 0.75 +1.3
802,756 + ABZR87_RS03885 0.75 +3.0
802,756 + ABZR87_RS03885 0.75 +1.8
802,756 + ABZR87_RS03885 0.75 +0.1
802,756 + ABZR87_RS03885 0.75 +0.5
802,757 - ABZR87_RS03885 0.75 -0.1
802,757 - ABZR87_RS03885 0.75 -0.3
802,757 - ABZR87_RS03885 0.75 +0.6
802,757 - ABZR87_RS03885 0.75 +1.2
802,813 + ABZR87_RS03885 0.79 +0.7
802,813 + ABZR87_RS03885 0.79 -1.3
802,813 + ABZR87_RS03885 0.79 +0.1
802,813 + ABZR87_RS03885 0.79 +0.2
802,813 + ABZR87_RS03885 0.79 +1.3
802,814 - ABZR87_RS03885 0.79 +0.0
802,814 - ABZR87_RS03885 0.79 -0.8
802,814 - ABZR87_RS03885 0.79 -0.3
802,814 - ABZR87_RS03885 0.79 +1.7
802,814 - ABZR87_RS03885 0.79 +1.1
802,840 + ABZR87_RS03885 0.80 -0.9
802,840 + ABZR87_RS03885 0.80 -2.2
802,841 - ABZR87_RS03885 0.80 -2.7
802,841 - ABZR87_RS03885 0.80 -1.9
802,885 + ABZR87_RS03885 0.83 -3.4
802,885 + ABZR87_RS03885 0.83 -4.2
802,885 + ABZR87_RS03885 0.83 -0.8
802,885 + ABZR87_RS03885 0.83 -0.8
802,885 + ABZR87_RS03885 0.83 -0.2
802,885 + ABZR87_RS03885 0.83 +2.1
802,885 + ABZR87_RS03885 0.83 +1.7
802,885 + ABZR87_RS03885 0.83 -2.7
802,886 - ABZR87_RS03885 0.83 +2.3
802,886 - ABZR87_RS03885 0.83 +1.8
802,886 - ABZR87_RS03885 0.83 +0.3
803,192 - -2.4
803,192 - -2.6
803,223 + -2.6
803,223 + -4.0
803,224 - -1.0
803,224 - +0.9
803,224 - -1.9
803,224 - -1.2
803,224 - -1.5
803,224 - -2.5
803,348 + ABZR87_RS03890 0.14 -2.8
803,349 - ABZR87_RS03890 0.14 +0.7
803,452 + ABZR87_RS03890 0.27 -3.2
803,514 - ABZR87_RS03890 0.35 -2.7
803,696 + ABZR87_RS03890 0.59 -0.4
803,697 - ABZR87_RS03890 0.59 -3.7
803,697 - ABZR87_RS03890 0.59 -1.0
803,697 - ABZR87_RS03890 0.59 -0.2
803,756 + ABZR87_RS03890 0.66 -3.0
803,757 - ABZR87_RS03890 0.66 -2.7
803,765 + ABZR87_RS03890 0.67 -2.1
803,765 + ABZR87_RS03890 0.67 +1.3
803,765 + ABZR87_RS03890 0.67 +0.8
803,766 - ABZR87_RS03890 0.68 -2.3
803,774 + ABZR87_RS03890 0.69 -2.3
803,774 + ABZR87_RS03890 0.69 -3.6
803,774 + ABZR87_RS03890 0.69 +1.8
803,774 + ABZR87_RS03890 0.69 -0.6
803,775 - ABZR87_RS03890 0.69 +2.2
803,775 - ABZR87_RS03890 0.69 -3.5
803,775 - ABZR87_RS03890 0.69 +2.2
803,775 - ABZR87_RS03890 0.69 -0.8
803,775 - ABZR87_RS03890 0.69 -3.2
803,775 - ABZR87_RS03890 0.69 -0.5
803,775 - ABZR87_RS03890 0.69 +1.1
803,775 - ABZR87_RS03890 0.69 +3.8
803,775 - ABZR87_RS03890 0.69 -3.1
803,806 + ABZR87_RS03890 0.73 +1.2
803,807 - ABZR87_RS03890 0.73 +0.1
803,897 + ABZR87_RS03890 0.84 -2.8
803,897 + ABZR87_RS03890 0.84 +0.4
803,933 + ABZR87_RS03890 0.89 -0.8
803,934 - ABZR87_RS03890 0.89 +2.1
803,957 + -1.4
803,958 - +0.4
803,958 - +1.0
803,958 - +3.1
803,958 - +0.8
803,958 - +3.2
803,958 - +0.2
803,965 + -0.1
803,966 - -3.1
803,966 - -0.8
803,966 - -0.2

Or see this region's nucleotide sequence