Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29090

Experiment: Ionizing radiation, 126.196 Gy,

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_29085 and AO353_29090 are separated by 320 nucleotidesAO353_29090 and AO353_29095 overlap by 35 nucleotidesAO353_29095 and AO353_29100 are separated by 92 nucleotides AO353_29085: AO353_29085 - methyltransferase, at 6,321,447 to 6,322,385 _29085 AO353_29090: AO353_29090 - toxin-antitoxin system protein, at 6,322,706 to 6,322,996 _29090 AO353_29095: AO353_29095 - addiction module toxin RelE, at 6,322,962 to 6,323,276 _29095 AO353_29100: AO353_29100 - GNAT family acetyltransferase, at 6,323,369 to 6,324,049 _29100 Position (kb) 6322 6323Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6321.915 kb on + strand, within AO353_29085at 6321.916 kb on - strand, within AO353_29085at 6322.105 kb on - strand, within AO353_29085at 6322.167 kb on + strand, within AO353_29085at 6322.167 kb on + strand, within AO353_29085at 6322.168 kb on - strand, within AO353_29085at 6322.168 kb on - strand, within AO353_29085at 6322.168 kb on - strand, within AO353_29085at 6322.168 kb on - strand, within AO353_29085at 6322.177 kb on + strand, within AO353_29085at 6322.178 kb on - strand, within AO353_29085at 6322.180 kb on + strand, within AO353_29085at 6322.180 kb on + strand, within AO353_29085at 6322.180 kb on + strand, within AO353_29085at 6322.181 kb on - strand, within AO353_29085at 6322.393 kb on + strandat 6322.393 kb on + strandat 6322.394 kb on - strandat 6322.394 kb on - strandat 6322.394 kb on - strandat 6322.394 kb on - strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.396 kb on + strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.397 kb on - strandat 6322.443 kb on + strandat 6322.443 kb on + strandat 6322.477 kb on - strandat 6322.531 kb on - strandat 6322.546 kb on - strandat 6322.559 kb on - strandat 6322.597 kb on + strandat 6322.598 kb on - strandat 6322.677 kb on - strandat 6322.681 kb on - strandat 6322.727 kb on - strandat 6322.783 kb on - strand, within AO353_29090at 6323.049 kb on + strand, within AO353_29095at 6323.049 kb on + strand, within AO353_29095at 6323.049 kb on + strand, within AO353_29095at 6323.050 kb on - strand, within AO353_29095at 6323.050 kb on - strand, within AO353_29095at 6323.050 kb on - strand, within AO353_29095at 6323.050 kb on - strand, within AO353_29095at 6323.050 kb on - strand, within AO353_29095at 6323.073 kb on - strand, within AO353_29095at 6323.104 kb on + strand, within AO353_29095at 6323.104 kb on + strand, within AO353_29095at 6323.105 kb on - strand, within AO353_29095at 6323.105 kb on - strand, within AO353_29095at 6323.105 kb on - strand, within AO353_29095at 6323.183 kb on + strand, within AO353_29095at 6323.184 kb on - strand, within AO353_29095at 6323.208 kb on + strand, within AO353_29095at 6323.208 kb on + strand, within AO353_29095at 6323.209 kb on - strand, within AO353_29095at 6323.234 kb on + strand, within AO353_29095at 6323.235 kb on - strand, within AO353_29095at 6323.275 kb on - strandat 6323.290 kb on - strandat 6323.312 kb on + strandat 6323.312 kb on + strandat 6323.312 kb on + strandat 6323.312 kb on + strandat 6323.313 kb on - strandat 6323.313 kb on - strandat 6323.313 kb on - strandat 6323.313 kb on - strandat 6323.313 kb on - strandat 6323.313 kb on - strandat 6323.313 kb on - strandat 6323.313 kb on - strandat 6323.324 kb on + strandat 6323.324 kb on + strandat 6323.324 kb on + strandat 6323.324 kb on + strandat 6323.324 kb on + strandat 6323.324 kb on + strandat 6323.324 kb on + strandat 6323.325 kb on - strandat 6323.325 kb on - strandat 6323.325 kb on - strandat 6323.325 kb on - strandat 6323.325 kb on - strandat 6323.325 kb on - strandat 6323.325 kb on - strandat 6323.327 kb on - strandat 6323.327 kb on - strandat 6323.327 kb on - strandat 6323.354 kb on - strandat 6323.370 kb on + strandat 6323.371 kb on - strandat 6323.371 kb on - strandat 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.484 kb on + strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.485 kb on - strand, within AO353_29100at 6323.488 kb on + strand, within AO353_29100at 6323.488 kb on + strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.489 kb on - strand, within AO353_29100at 6323.743 kb on + strand, within AO353_29100at 6323.743 kb on + strand, within AO353_29100at 6323.743 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.745 kb on + strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.746 kb on - strand, within AO353_29100at 6323.787 kb on + strand, within AO353_29100at 6323.787 kb on + strand, within AO353_29100at 6323.787 kb on + strand, within AO353_29100at 6323.788 kb on - strand, within AO353_29100at 6323.788 kb on - strand, within AO353_29100at 6323.788 kb on - strand, within AO353_29100at 6323.860 kb on + strand, within AO353_29100at 6323.861 kb on - strand, within AO353_29100at 6323.861 kb on - strand, within AO353_29100at 6323.861 kb on - strand, within AO353_29100at 6323.861 kb on - strand, within AO353_29100at 6323.861 kb on - strand, within AO353_29100at 6323.883 kb on + strand, within AO353_29100at 6323.883 kb on + strand, within AO353_29100at 6323.883 kb on + strand, within AO353_29100at 6323.883 kb on + strand, within AO353_29100at 6323.883 kb on + strand, within AO353_29100at 6323.884 kb on - strand, within AO353_29100at 6323.884 kb on - strand, within AO353_29100at 6323.910 kb on + strand, within AO353_29100at 6323.911 kb on - strand, within AO353_29100at 6323.916 kb on + strand, within AO353_29100at 6323.916 kb on + strand, within AO353_29100at 6323.916 kb on + strand, within AO353_29100at 6323.916 kb on + strand, within AO353_29100at 6323.917 kb on - strand, within AO353_29100at 6323.917 kb on - strand, within AO353_29100at 6323.973 kb on + strand, within AO353_29100at 6323.974 kb on - strand, within AO353_29100at 6323.974 kb on - strand, within AO353_29100at 6323.974 kb on - strand, within AO353_29100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ionizing radiation, 126.196 Gy,
remove
6,321,915 + AO353_29085 0.50 -1.3
6,321,916 - AO353_29085 0.50 -0.5
6,322,105 - AO353_29085 0.70 -0.6
6,322,167 + AO353_29085 0.77 -0.3
6,322,167 + AO353_29085 0.77 -0.7
6,322,168 - AO353_29085 0.77 +1.2
6,322,168 - AO353_29085 0.77 -1.8
6,322,168 - AO353_29085 0.77 -0.2
6,322,168 - AO353_29085 0.77 +0.3
6,322,177 + AO353_29085 0.78 +0.8
6,322,178 - AO353_29085 0.78 -0.6
6,322,180 + AO353_29085 0.78 -0.9
6,322,180 + AO353_29085 0.78 +0.8
6,322,180 + AO353_29085 0.78 +2.4
6,322,181 - AO353_29085 0.78 +0.8
6,322,393 + +0.2
6,322,393 + -0.2
6,322,394 - +0.6
6,322,394 - +0.8
6,322,394 - -1.2
6,322,394 - -0.2
6,322,396 + +0.6
6,322,396 + +0.2
6,322,396 + -1.2
6,322,396 + -0.5
6,322,396 + +1.2
6,322,396 + +2.1
6,322,396 + -0.6
6,322,396 + -0.2
6,322,396 + +1.0
6,322,396 + +0.6
6,322,396 + -0.6
6,322,396 + +0.1
6,322,396 + -2.2
6,322,396 + -0.3
6,322,397 - +0.3
6,322,397 - -0.2
6,322,397 - +0.3
6,322,397 - -0.2
6,322,397 - +0.5
6,322,397 - +0.2
6,322,397 - -1.0
6,322,397 - -0.2
6,322,397 - -0.7
6,322,397 - +0.4
6,322,397 - -0.2
6,322,397 - -0.8
6,322,397 - -2.0
6,322,397 - +1.8
6,322,397 - +0.2
6,322,397 - -1.4
6,322,397 - -0.6
6,322,397 - -1.8
6,322,397 - -1.2
6,322,397 - -0.2
6,322,443 + -1.8
6,322,443 + -0.4
6,322,477 - +0.2
6,322,531 - -1.2
6,322,546 - +0.0
6,322,559 - +0.6
6,322,597 + -0.2
6,322,598 - -0.8
6,322,677 - -0.8
6,322,681 - -0.2
6,322,727 - +0.2
6,322,783 - AO353_29090 0.26 -0.9
6,323,049 + AO353_29095 0.28 +0.8
6,323,049 + AO353_29095 0.28 -1.4
6,323,049 + AO353_29095 0.28 +1.4
6,323,050 - AO353_29095 0.28 +1.1
6,323,050 - AO353_29095 0.28 -0.6
6,323,050 - AO353_29095 0.28 -0.6
6,323,050 - AO353_29095 0.28 +0.4
6,323,050 - AO353_29095 0.28 -0.9
6,323,073 - AO353_29095 0.35 +0.8
6,323,104 + AO353_29095 0.45 +1.4
6,323,104 + AO353_29095 0.45 -0.6
6,323,105 - AO353_29095 0.45 -0.6
6,323,105 - AO353_29095 0.45 -0.8
6,323,105 - AO353_29095 0.45 -0.8
6,323,183 + AO353_29095 0.70 -0.1
6,323,184 - AO353_29095 0.70 -0.2
6,323,208 + AO353_29095 0.78 -1.2
6,323,208 + AO353_29095 0.78 +0.1
6,323,209 - AO353_29095 0.78 -0.4
6,323,234 + AO353_29095 0.86 -1.7
6,323,235 - AO353_29095 0.87 -2.2
6,323,275 - +0.2
6,323,290 - -1.8
6,323,312 + -0.5
6,323,312 + -0.2
6,323,312 + +0.2
6,323,312 + +0.6
6,323,313 - -1.2
6,323,313 - -0.2
6,323,313 - -1.8
6,323,313 - -1.8
6,323,313 - -0.2
6,323,313 - -1.8
6,323,313 - -0.8
6,323,313 - +0.4
6,323,324 + -0.8
6,323,324 + +1.2
6,323,324 + +0.6
6,323,324 + +0.6
6,323,324 + -1.2
6,323,324 + +0.8
6,323,324 + +0.8
6,323,325 - -2.8
6,323,325 - +0.2
6,323,325 - -0.8
6,323,325 - +0.2
6,323,325 - +0.3
6,323,325 - +0.2
6,323,325 - +0.8
6,323,327 - -0.8
6,323,327 - +0.8
6,323,327 - +2.8
6,323,354 - -1.8
6,323,370 + +0.2
6,323,371 - +0.2
6,323,371 - +0.2
6,323,484 + AO353_29100 0.17 +1.2
6,323,484 + AO353_29100 0.17 -0.4
6,323,484 + AO353_29100 0.17 +0.6
6,323,484 + AO353_29100 0.17 +0.3
6,323,484 + AO353_29100 0.17 -0.2
6,323,484 + AO353_29100 0.17 -2.5
6,323,484 + AO353_29100 0.17 -0.7
6,323,484 + AO353_29100 0.17 -0.8
6,323,484 + AO353_29100 0.17 -0.2
6,323,484 + AO353_29100 0.17 -1.2
6,323,484 + AO353_29100 0.17 +1.3
6,323,484 + AO353_29100 0.17 -0.2
6,323,484 + AO353_29100 0.17 -0.2
6,323,484 + AO353_29100 0.17 -0.9
6,323,485 - AO353_29100 0.17 -0.5
6,323,485 - AO353_29100 0.17 -2.0
6,323,485 - AO353_29100 0.17 +0.6
6,323,485 - AO353_29100 0.17 +0.1
6,323,485 - AO353_29100 0.17 -0.4
6,323,485 - AO353_29100 0.17 -0.8
6,323,485 - AO353_29100 0.17 -1.9
6,323,485 - AO353_29100 0.17 -0.3
6,323,488 + AO353_29100 0.17 +0.2
6,323,488 + AO353_29100 0.17 +0.6
6,323,489 - AO353_29100 0.18 +1.2
6,323,489 - AO353_29100 0.18 +0.8
6,323,489 - AO353_29100 0.18 -1.5
6,323,489 - AO353_29100 0.18 +0.2
6,323,489 - AO353_29100 0.18 -1.2
6,323,489 - AO353_29100 0.18 +0.0
6,323,489 - AO353_29100 0.18 -0.4
6,323,489 - AO353_29100 0.18 +0.2
6,323,489 - AO353_29100 0.18 +0.6
6,323,489 - AO353_29100 0.18 +0.8
6,323,489 - AO353_29100 0.18 +1.0
6,323,743 + AO353_29100 0.55 +1.2
6,323,743 + AO353_29100 0.55 +0.1
6,323,743 + AO353_29100 0.55 -0.9
6,323,745 + AO353_29100 0.55 -2.6
6,323,745 + AO353_29100 0.55 -1.8
6,323,745 + AO353_29100 0.55 -0.5
6,323,745 + AO353_29100 0.55 -0.4
6,323,745 + AO353_29100 0.55 -0.7
6,323,745 + AO353_29100 0.55 +0.8
6,323,745 + AO353_29100 0.55 +0.8
6,323,745 + AO353_29100 0.55 +1.0
6,323,746 - AO353_29100 0.55 +3.2
6,323,746 - AO353_29100 0.55 +0.1
6,323,746 - AO353_29100 0.55 -0.3
6,323,746 - AO353_29100 0.55 +0.6
6,323,746 - AO353_29100 0.55 -0.4
6,323,746 - AO353_29100 0.55 +0.8
6,323,746 - AO353_29100 0.55 -1.6
6,323,746 - AO353_29100 0.55 -1.2
6,323,746 - AO353_29100 0.55 +2.6
6,323,787 + AO353_29100 0.61 -0.4
6,323,787 + AO353_29100 0.61 +1.6
6,323,787 + AO353_29100 0.61 +0.0
6,323,788 - AO353_29100 0.62 +0.4
6,323,788 - AO353_29100 0.62 +1.5
6,323,788 - AO353_29100 0.62 +0.8
6,323,860 + AO353_29100 0.72 -0.4
6,323,861 - AO353_29100 0.72 +0.6
6,323,861 - AO353_29100 0.72 +0.2
6,323,861 - AO353_29100 0.72 +0.4
6,323,861 - AO353_29100 0.72 -0.5
6,323,861 - AO353_29100 0.72 +0.7
6,323,883 + AO353_29100 0.75 +0.2
6,323,883 + AO353_29100 0.75 +0.8
6,323,883 + AO353_29100 0.75 -0.8
6,323,883 + AO353_29100 0.75 -0.6
6,323,883 + AO353_29100 0.75 +0.1
6,323,884 - AO353_29100 0.76 +0.4
6,323,884 - AO353_29100 0.76 +2.2
6,323,910 + AO353_29100 0.79 +0.6
6,323,911 - AO353_29100 0.80 +0.0
6,323,916 + AO353_29100 0.80 +0.0
6,323,916 + AO353_29100 0.80 -0.4
6,323,916 + AO353_29100 0.80 -0.7
6,323,916 + AO353_29100 0.80 -0.8
6,323,917 - AO353_29100 0.80 -1.8
6,323,917 - AO353_29100 0.80 -0.2
6,323,973 + AO353_29100 0.89 -2.8
6,323,974 - AO353_29100 0.89 +0.2
6,323,974 - AO353_29100 0.89 -1.2
6,323,974 - AO353_29100 0.89 +0.8

Or see this region's nucleotide sequence