Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03058 and SMc03059 are separated by 318 nucleotides SMc03059 and SMc03060 are separated by 558 nucleotides
SMc03058: SMc03058 - glycosyltransferase, at 753,602 to 754,591
SMc03058
SMc03059: SMc03059 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 754,910 to 755,809
SMc03059
SMc03060: SMc03060 - transcriptional regulator, at 756,368 to 757,438
SMc03060
Position (kb)
754
755
756 Strain fitness (log2 ratio)
-1
0
1
2 at 753.972 kb on - strand, within SMc03058 at 753.983 kb on - strand, within SMc03058 at 754.060 kb on - strand, within SMc03058 at 754.230 kb on - strand, within SMc03058 at 754.242 kb on + strand, within SMc03058 at 754.243 kb on - strand, within SMc03058 at 754.243 kb on - strand, within SMc03058 at 754.624 kb on + strand at 754.625 kb on - strand at 754.625 kb on - strand at 754.816 kb on - strand at 754.833 kb on + strand at 754.833 kb on + strand at 754.871 kb on + strand at 754.871 kb on + strand at 755.824 kb on + strand at 755.824 kb on + strand at 755.825 kb on - strand at 755.825 kb on - strand at 755.825 kb on - strand at 755.857 kb on - strand at 755.870 kb on - strand at 755.870 kb on - strand at 756.251 kb on + strand at 756.251 kb on + strand at 756.251 kb on + strand at 756.251 kb on + strand at 756.251 kb on + strand at 756.251 kb on + strand at 756.264 kb on + strand at 756.477 kb on + strand, within SMc03060 at 756.494 kb on + strand, within SMc03060 at 756.495 kb on - strand, within SMc03060 at 756.688 kb on + strand, within SMc03060 at 756.689 kb on - strand, within SMc03060
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 753,972 - SMc03058 0.37 +2.0 753,983 - SMc03058 0.38 +0.2 754,060 - SMc03058 0.46 -0.2 754,230 - SMc03058 0.63 -0.3 754,242 + SMc03058 0.65 -0.3 754,243 - SMc03058 0.65 +0.1 754,243 - SMc03058 0.65 +1.2 754,624 + +1.8 754,625 - +0.2 754,625 - +0.6 754,816 - -1.6 754,833 + +0.2 754,833 + -0.2 754,871 + -0.0 754,871 + +1.0 755,824 + -0.4 755,824 + -1.7 755,825 - +0.1 755,825 - +0.5 755,825 - -0.7 755,857 - +0.1 755,870 - -1.4 755,870 - -0.6 756,251 + +0.1 756,251 + -0.2 756,251 + +0.6 756,251 + +0.1 756,251 + -0.9 756,251 + +0.4 756,264 + -0.4 756,477 + SMc03060 0.10 -1.2 756,494 + SMc03060 0.12 -0.3 756,495 - SMc03060 0.12 +1.2 756,688 + SMc03060 0.30 +0.7 756,689 - SMc03060 0.30 +0.2
Or see this region's nucleotide sequence