Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2031 and SMa2032 overlap by 163 nucleotides SMa2032 and SMa2033 are separated by 532 nucleotides SMa2033 and SMa2034 are separated by 930 nucleotides
SMa2031: SMa2031 - non-heme chloroperoxidase, at 1,148,874 to 1,149,245
SMa2031
SMa2032: SMa2032 - non-heme chloroperoxidase, at 1,149,083 to 1,149,382
SMa2032
SMa2033: SMa2033 - Transglycosylase, at 1,149,915 to 1,150,712
SMa2033
SMa2034: SMa2034 - hypothetical protein, at 1,151,643 to 1,151,888
SMa2034
Position (kb)
1149
1150
1151 Strain fitness (log2 ratio)
-1
0
1
2 at 1149.121 kb on + strand at 1149.122 kb on - strand at 1149.122 kb on - strand at 1149.466 kb on + strand at 1149.467 kb on - strand at 1149.486 kb on - strand at 1149.500 kb on + strand at 1149.783 kb on - strand at 1149.930 kb on - strand at 1150.110 kb on + strand, within SMa2033 at 1150.110 kb on + strand, within SMa2033 at 1150.111 kb on - strand, within SMa2033 at 1150.118 kb on - strand, within SMa2033 at 1150.178 kb on + strand, within SMa2033 at 1150.521 kb on + strand, within SMa2033 at 1150.522 kb on - strand, within SMa2033 at 1150.522 kb on - strand, within SMa2033 at 1150.522 kb on - strand, within SMa2033 at 1150.556 kb on + strand, within SMa2033 at 1150.557 kb on - strand, within SMa2033 at 1150.617 kb on + strand, within SMa2033 at 1150.718 kb on + strand at 1150.719 kb on - strand at 1150.719 kb on - strand at 1150.719 kb on - strand at 1150.735 kb on - strand at 1151.077 kb on + strand at 1151.106 kb on - strand at 1151.279 kb on + strand at 1151.371 kb on - strand at 1151.376 kb on + strand at 1151.376 kb on + strand at 1151.454 kb on + strand at 1151.508 kb on - strand at 1151.509 kb on + strand at 1151.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,149,121 + -0.2 1,149,122 - -0.1 1,149,122 - -0.3 1,149,466 + +1.5 1,149,467 - -0.1 1,149,486 - +0.1 1,149,500 + +1.1 1,149,783 - -0.3 1,149,930 - -0.0 1,150,110 + SMa2033 0.24 -0.0 1,150,110 + SMa2033 0.24 +0.4 1,150,111 - SMa2033 0.25 -1.1 1,150,118 - SMa2033 0.25 +0.8 1,150,178 + SMa2033 0.33 +2.5 1,150,521 + SMa2033 0.76 +0.3 1,150,522 - SMa2033 0.76 +1.1 1,150,522 - SMa2033 0.76 +0.6 1,150,522 - SMa2033 0.76 +0.3 1,150,556 + SMa2033 0.80 -1.0 1,150,557 - SMa2033 0.80 -0.2 1,150,617 + SMa2033 0.88 +0.3 1,150,718 + -0.0 1,150,719 - +0.3 1,150,719 - +1.2 1,150,719 - +0.1 1,150,735 - -0.8 1,151,077 + +0.3 1,151,106 - +0.3 1,151,279 + -0.6 1,151,371 - -0.9 1,151,376 + -0.1 1,151,376 + +0.1 1,151,454 + +0.4 1,151,508 - -0.4 1,151,509 + +0.1 1,151,619 - -1.4
Or see this region's nucleotide sequence