Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04995 and ABZR87_RS05000 are separated by 73 nucleotides ABZR87_RS05000 and ABZR87_RS05005 are separated by 452 nucleotides
ABZR87_RS04995: ABZR87_RS04995 - DNA topoisomerase III, at 1,048,503 to 1,051,133
_RS04995
ABZR87_RS05000: ABZR87_RS05000 - LysR family transcriptional regulator, at 1,051,207 to 1,052,145
_RS05000
ABZR87_RS05005: ABZR87_RS05005 - AMP-binding protein, at 1,052,598 to 1,054,286
_RS05005
Position (kb)
1051
1052
1053 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1050.711 kb on + strand, within ABZR87_RS04995 at 1050.712 kb on - strand, within ABZR87_RS04995 at 1050.729 kb on + strand, within ABZR87_RS04995 at 1050.729 kb on + strand, within ABZR87_RS04995 at 1050.729 kb on + strand, within ABZR87_RS04995 at 1050.729 kb on + strand, within ABZR87_RS04995 at 1050.730 kb on - strand, within ABZR87_RS04995 at 1050.730 kb on - strand, within ABZR87_RS04995 at 1051.155 kb on + strand at 1051.155 kb on + strand at 1051.156 kb on - strand at 1051.156 kb on - strand at 1051.156 kb on - strand at 1051.156 kb on - strand at 1051.209 kb on - strand at 1051.280 kb on + strand at 1051.280 kb on + strand at 1051.280 kb on + strand at 1051.280 kb on + strand at 1051.280 kb on + strand at 1051.281 kb on - strand at 1051.281 kb on - strand at 1051.281 kb on - strand at 1051.329 kb on - strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.361 kb on + strand, within ABZR87_RS05000 at 1051.362 kb on - strand, within ABZR87_RS05000 at 1051.362 kb on - strand, within ABZR87_RS05000 at 1051.362 kb on - strand, within ABZR87_RS05000 at 1051.362 kb on - strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.415 kb on + strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.416 kb on - strand, within ABZR87_RS05000 at 1051.593 kb on + strand, within ABZR87_RS05000 at 1051.593 kb on + strand, within ABZR87_RS05000 at 1051.593 kb on + strand, within ABZR87_RS05000 at 1051.593 kb on + strand, within ABZR87_RS05000 at 1051.593 kb on + strand, within ABZR87_RS05000 at 1051.594 kb on - strand, within ABZR87_RS05000 at 1051.631 kb on + strand, within ABZR87_RS05000 at 1051.631 kb on + strand, within ABZR87_RS05000 at 1051.632 kb on - strand, within ABZR87_RS05000 at 1051.632 kb on - strand, within ABZR87_RS05000 at 1051.793 kb on + strand, within ABZR87_RS05000 at 1051.793 kb on + strand, within ABZR87_RS05000 at 1051.952 kb on + strand, within ABZR87_RS05000 at 1051.952 kb on + strand, within ABZR87_RS05000 at 1051.952 kb on + strand, within ABZR87_RS05000 at 1051.953 kb on - strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.039 kb on + strand, within ABZR87_RS05000 at 1052.040 kb on - strand, within ABZR87_RS05000 at 1052.040 kb on - strand, within ABZR87_RS05000 at 1052.040 kb on - strand, within ABZR87_RS05000 at 1052.040 kb on - strand, within ABZR87_RS05000 at 1052.040 kb on - strand, within ABZR87_RS05000 at 1052.040 kb on - strand, within ABZR87_RS05000 at 1052.040 kb on - strand, within ABZR87_RS05000 at 1052.160 kb on + strand at 1052.160 kb on + strand at 1052.160 kb on + strand at 1052.161 kb on - strand at 1052.177 kb on + strand at 1052.207 kb on + strand at 1052.208 kb on - strand at 1052.210 kb on + strand at 1052.210 kb on + strand at 1052.211 kb on - strand at 1052.234 kb on + strand at 1052.369 kb on + strand at 1052.369 kb on + strand at 1052.369 kb on + strand at 1052.370 kb on - strand at 1052.628 kb on + strand at 1052.628 kb on + strand at 1052.628 kb on + strand at 1052.629 kb on - strand at 1052.629 kb on - strand at 1052.658 kb on + strand at 1052.658 kb on + strand at 1052.658 kb on + strand at 1052.659 kb on - strand at 1052.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 1,050,711 + ABZR87_RS04995 0.84 -1.3 1,050,712 - ABZR87_RS04995 0.84 -0.3 1,050,729 + ABZR87_RS04995 0.85 +0.7 1,050,729 + ABZR87_RS04995 0.85 -0.9 1,050,729 + ABZR87_RS04995 0.85 +0.7 1,050,729 + ABZR87_RS04995 0.85 -0.7 1,050,730 - ABZR87_RS04995 0.85 -2.1 1,050,730 - ABZR87_RS04995 0.85 -2.5 1,051,155 + -1.4 1,051,155 + +2.5 1,051,156 - +1.2 1,051,156 - +1.3 1,051,156 - +1.1 1,051,156 - +1.2 1,051,209 - +0.7 1,051,280 + -3.9 1,051,280 + -2.0 1,051,280 + -0.1 1,051,280 + -2.8 1,051,280 + -1.6 1,051,281 - -3.9 1,051,281 - -2.3 1,051,281 - -4.7 1,051,329 - ABZR87_RS05000 0.13 -2.1 1,051,361 + ABZR87_RS05000 0.16 -2.1 1,051,361 + ABZR87_RS05000 0.16 -3.6 1,051,361 + ABZR87_RS05000 0.16 -2.1 1,051,361 + ABZR87_RS05000 0.16 -2.8 1,051,361 + ABZR87_RS05000 0.16 -4.1 1,051,361 + ABZR87_RS05000 0.16 -3.0 1,051,361 + ABZR87_RS05000 0.16 -3.1 1,051,361 + ABZR87_RS05000 0.16 -2.7 1,051,361 + ABZR87_RS05000 0.16 -2.1 1,051,361 + ABZR87_RS05000 0.16 -5.4 1,051,362 - ABZR87_RS05000 0.17 -2.9 1,051,362 - ABZR87_RS05000 0.17 -2.1 1,051,362 - ABZR87_RS05000 0.17 -2.7 1,051,362 - ABZR87_RS05000 0.17 -2.4 1,051,415 + ABZR87_RS05000 0.22 -3.8 1,051,415 + ABZR87_RS05000 0.22 -3.0 1,051,415 + ABZR87_RS05000 0.22 -2.3 1,051,415 + ABZR87_RS05000 0.22 -1.8 1,051,415 + ABZR87_RS05000 0.22 -3.5 1,051,415 + ABZR87_RS05000 0.22 -3.8 1,051,415 + ABZR87_RS05000 0.22 -1.6 1,051,415 + ABZR87_RS05000 0.22 -3.2 1,051,415 + ABZR87_RS05000 0.22 -2.7 1,051,416 - ABZR87_RS05000 0.22 -3.1 1,051,416 - ABZR87_RS05000 0.22 -1.9 1,051,416 - ABZR87_RS05000 0.22 -0.8 1,051,416 - ABZR87_RS05000 0.22 -1.7 1,051,416 - ABZR87_RS05000 0.22 -2.5 1,051,416 - ABZR87_RS05000 0.22 -2.1 1,051,416 - ABZR87_RS05000 0.22 -2.6 1,051,416 - ABZR87_RS05000 0.22 -2.4 1,051,416 - ABZR87_RS05000 0.22 -1.4 1,051,416 - ABZR87_RS05000 0.22 -5.3 1,051,593 + ABZR87_RS05000 0.41 -4.6 1,051,593 + ABZR87_RS05000 0.41 -1.7 1,051,593 + ABZR87_RS05000 0.41 -1.1 1,051,593 + ABZR87_RS05000 0.41 -5.2 1,051,593 + ABZR87_RS05000 0.41 -3.5 1,051,594 - ABZR87_RS05000 0.41 -1.8 1,051,631 + ABZR87_RS05000 0.45 -1.9 1,051,631 + ABZR87_RS05000 0.45 -5.2 1,051,632 - ABZR87_RS05000 0.45 -2.3 1,051,632 - ABZR87_RS05000 0.45 +1.7 1,051,793 + ABZR87_RS05000 0.62 -2.8 1,051,793 + ABZR87_RS05000 0.62 -1.7 1,051,952 + ABZR87_RS05000 0.79 -4.4 1,051,952 + ABZR87_RS05000 0.79 -3.9 1,051,952 + ABZR87_RS05000 0.79 -4.2 1,051,953 - ABZR87_RS05000 0.79 -2.0 1,052,039 + ABZR87_RS05000 0.89 -1.8 1,052,039 + ABZR87_RS05000 0.89 -2.6 1,052,039 + ABZR87_RS05000 0.89 -3.3 1,052,039 + ABZR87_RS05000 0.89 -3.6 1,052,039 + ABZR87_RS05000 0.89 -1.5 1,052,039 + ABZR87_RS05000 0.89 -2.4 1,052,039 + ABZR87_RS05000 0.89 -4.0 1,052,039 + ABZR87_RS05000 0.89 -2.3 1,052,039 + ABZR87_RS05000 0.89 +1.7 1,052,039 + ABZR87_RS05000 0.89 -2.5 1,052,040 - ABZR87_RS05000 0.89 -0.4 1,052,040 - ABZR87_RS05000 0.89 -2.0 1,052,040 - ABZR87_RS05000 0.89 -3.8 1,052,040 - ABZR87_RS05000 0.89 -3.6 1,052,040 - ABZR87_RS05000 0.89 -2.8 1,052,040 - ABZR87_RS05000 0.89 +0.1 1,052,040 - ABZR87_RS05000 0.89 -3.2 1,052,160 + -1.6 1,052,160 + -4.0 1,052,160 + -0.7 1,052,161 - +3.1 1,052,177 + -1.3 1,052,207 + -0.3 1,052,208 - +2.1 1,052,210 + -1.5 1,052,210 + -0.6 1,052,211 - +0.4 1,052,234 + +1.0 1,052,369 + +0.9 1,052,369 + -1.1 1,052,369 + +0.9 1,052,370 - +0.5 1,052,628 + +1.2 1,052,628 + +0.1 1,052,628 + +1.7 1,052,629 - +2.0 1,052,629 - +2.3 1,052,658 + +1.0 1,052,658 + +1.9 1,052,658 + +0.1 1,052,659 - +1.5 1,052,659 - +1.3
Or see this region's nucleotide sequence