Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05000

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04995 and ABZR87_RS05000 are separated by 73 nucleotidesABZR87_RS05000 and ABZR87_RS05005 are separated by 452 nucleotides ABZR87_RS04995: ABZR87_RS04995 - DNA topoisomerase III, at 1,048,503 to 1,051,133 _RS04995 ABZR87_RS05000: ABZR87_RS05000 - LysR family transcriptional regulator, at 1,051,207 to 1,052,145 _RS05000 ABZR87_RS05005: ABZR87_RS05005 - AMP-binding protein, at 1,052,598 to 1,054,286 _RS05005 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1050.711 kb on + strand, within ABZR87_RS04995at 1050.712 kb on - strand, within ABZR87_RS04995at 1050.729 kb on + strand, within ABZR87_RS04995at 1050.729 kb on + strand, within ABZR87_RS04995at 1050.729 kb on + strand, within ABZR87_RS04995at 1050.729 kb on + strand, within ABZR87_RS04995at 1050.730 kb on - strand, within ABZR87_RS04995at 1050.730 kb on - strand, within ABZR87_RS04995at 1051.155 kb on + strandat 1051.155 kb on + strandat 1051.156 kb on - strandat 1051.156 kb on - strandat 1051.156 kb on - strandat 1051.156 kb on - strandat 1051.209 kb on - strandat 1051.280 kb on + strandat 1051.280 kb on + strandat 1051.280 kb on + strandat 1051.280 kb on + strandat 1051.280 kb on + strandat 1051.281 kb on - strandat 1051.281 kb on - strandat 1051.281 kb on - strandat 1051.329 kb on - strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.361 kb on + strand, within ABZR87_RS05000at 1051.362 kb on - strand, within ABZR87_RS05000at 1051.362 kb on - strand, within ABZR87_RS05000at 1051.362 kb on - strand, within ABZR87_RS05000at 1051.362 kb on - strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.415 kb on + strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.416 kb on - strand, within ABZR87_RS05000at 1051.593 kb on + strand, within ABZR87_RS05000at 1051.593 kb on + strand, within ABZR87_RS05000at 1051.593 kb on + strand, within ABZR87_RS05000at 1051.593 kb on + strand, within ABZR87_RS05000at 1051.593 kb on + strand, within ABZR87_RS05000at 1051.594 kb on - strand, within ABZR87_RS05000at 1051.631 kb on + strand, within ABZR87_RS05000at 1051.631 kb on + strand, within ABZR87_RS05000at 1051.632 kb on - strand, within ABZR87_RS05000at 1051.632 kb on - strand, within ABZR87_RS05000at 1051.793 kb on + strand, within ABZR87_RS05000at 1051.793 kb on + strand, within ABZR87_RS05000at 1051.952 kb on + strand, within ABZR87_RS05000at 1051.952 kb on + strand, within ABZR87_RS05000at 1051.952 kb on + strand, within ABZR87_RS05000at 1051.953 kb on - strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.039 kb on + strand, within ABZR87_RS05000at 1052.040 kb on - strand, within ABZR87_RS05000at 1052.040 kb on - strand, within ABZR87_RS05000at 1052.040 kb on - strand, within ABZR87_RS05000at 1052.040 kb on - strand, within ABZR87_RS05000at 1052.040 kb on - strand, within ABZR87_RS05000at 1052.040 kb on - strand, within ABZR87_RS05000at 1052.040 kb on - strand, within ABZR87_RS05000at 1052.160 kb on + strandat 1052.160 kb on + strandat 1052.160 kb on + strandat 1052.161 kb on - strandat 1052.177 kb on + strandat 1052.207 kb on + strandat 1052.208 kb on - strandat 1052.210 kb on + strandat 1052.210 kb on + strandat 1052.211 kb on - strandat 1052.234 kb on + strandat 1052.369 kb on + strandat 1052.369 kb on + strandat 1052.369 kb on + strandat 1052.370 kb on - strandat 1052.628 kb on + strandat 1052.628 kb on + strandat 1052.628 kb on + strandat 1052.629 kb on - strandat 1052.629 kb on - strandat 1052.658 kb on + strandat 1052.658 kb on + strandat 1052.658 kb on + strandat 1052.659 kb on - strandat 1052.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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1,050,711 + ABZR87_RS04995 0.84 -1.3
1,050,712 - ABZR87_RS04995 0.84 -0.3
1,050,729 + ABZR87_RS04995 0.85 +0.7
1,050,729 + ABZR87_RS04995 0.85 -0.9
1,050,729 + ABZR87_RS04995 0.85 +0.7
1,050,729 + ABZR87_RS04995 0.85 -0.7
1,050,730 - ABZR87_RS04995 0.85 -2.1
1,050,730 - ABZR87_RS04995 0.85 -2.5
1,051,155 + -1.4
1,051,155 + +2.5
1,051,156 - +1.2
1,051,156 - +1.3
1,051,156 - +1.1
1,051,156 - +1.2
1,051,209 - +0.7
1,051,280 + -3.9
1,051,280 + -2.0
1,051,280 + -0.1
1,051,280 + -2.8
1,051,280 + -1.6
1,051,281 - -3.9
1,051,281 - -2.3
1,051,281 - -4.7
1,051,329 - ABZR87_RS05000 0.13 -2.1
1,051,361 + ABZR87_RS05000 0.16 -2.1
1,051,361 + ABZR87_RS05000 0.16 -3.6
1,051,361 + ABZR87_RS05000 0.16 -2.1
1,051,361 + ABZR87_RS05000 0.16 -2.8
1,051,361 + ABZR87_RS05000 0.16 -4.1
1,051,361 + ABZR87_RS05000 0.16 -3.0
1,051,361 + ABZR87_RS05000 0.16 -3.1
1,051,361 + ABZR87_RS05000 0.16 -2.7
1,051,361 + ABZR87_RS05000 0.16 -2.1
1,051,361 + ABZR87_RS05000 0.16 -5.4
1,051,362 - ABZR87_RS05000 0.17 -2.9
1,051,362 - ABZR87_RS05000 0.17 -2.1
1,051,362 - ABZR87_RS05000 0.17 -2.7
1,051,362 - ABZR87_RS05000 0.17 -2.4
1,051,415 + ABZR87_RS05000 0.22 -3.8
1,051,415 + ABZR87_RS05000 0.22 -3.0
1,051,415 + ABZR87_RS05000 0.22 -2.3
1,051,415 + ABZR87_RS05000 0.22 -1.8
1,051,415 + ABZR87_RS05000 0.22 -3.5
1,051,415 + ABZR87_RS05000 0.22 -3.8
1,051,415 + ABZR87_RS05000 0.22 -1.6
1,051,415 + ABZR87_RS05000 0.22 -3.2
1,051,415 + ABZR87_RS05000 0.22 -2.7
1,051,416 - ABZR87_RS05000 0.22 -3.1
1,051,416 - ABZR87_RS05000 0.22 -1.9
1,051,416 - ABZR87_RS05000 0.22 -0.8
1,051,416 - ABZR87_RS05000 0.22 -1.7
1,051,416 - ABZR87_RS05000 0.22 -2.5
1,051,416 - ABZR87_RS05000 0.22 -2.1
1,051,416 - ABZR87_RS05000 0.22 -2.6
1,051,416 - ABZR87_RS05000 0.22 -2.4
1,051,416 - ABZR87_RS05000 0.22 -1.4
1,051,416 - ABZR87_RS05000 0.22 -5.3
1,051,593 + ABZR87_RS05000 0.41 -4.6
1,051,593 + ABZR87_RS05000 0.41 -1.7
1,051,593 + ABZR87_RS05000 0.41 -1.1
1,051,593 + ABZR87_RS05000 0.41 -5.2
1,051,593 + ABZR87_RS05000 0.41 -3.5
1,051,594 - ABZR87_RS05000 0.41 -1.8
1,051,631 + ABZR87_RS05000 0.45 -1.9
1,051,631 + ABZR87_RS05000 0.45 -5.2
1,051,632 - ABZR87_RS05000 0.45 -2.3
1,051,632 - ABZR87_RS05000 0.45 +1.7
1,051,793 + ABZR87_RS05000 0.62 -2.8
1,051,793 + ABZR87_RS05000 0.62 -1.7
1,051,952 + ABZR87_RS05000 0.79 -4.4
1,051,952 + ABZR87_RS05000 0.79 -3.9
1,051,952 + ABZR87_RS05000 0.79 -4.2
1,051,953 - ABZR87_RS05000 0.79 -2.0
1,052,039 + ABZR87_RS05000 0.89 -1.8
1,052,039 + ABZR87_RS05000 0.89 -2.6
1,052,039 + ABZR87_RS05000 0.89 -3.3
1,052,039 + ABZR87_RS05000 0.89 -3.6
1,052,039 + ABZR87_RS05000 0.89 -1.5
1,052,039 + ABZR87_RS05000 0.89 -2.4
1,052,039 + ABZR87_RS05000 0.89 -4.0
1,052,039 + ABZR87_RS05000 0.89 -2.3
1,052,039 + ABZR87_RS05000 0.89 +1.7
1,052,039 + ABZR87_RS05000 0.89 -2.5
1,052,040 - ABZR87_RS05000 0.89 -0.4
1,052,040 - ABZR87_RS05000 0.89 -2.0
1,052,040 - ABZR87_RS05000 0.89 -3.8
1,052,040 - ABZR87_RS05000 0.89 -3.6
1,052,040 - ABZR87_RS05000 0.89 -2.8
1,052,040 - ABZR87_RS05000 0.89 +0.1
1,052,040 - ABZR87_RS05000 0.89 -3.2
1,052,160 + -1.6
1,052,160 + -4.0
1,052,160 + -0.7
1,052,161 - +3.1
1,052,177 + -1.3
1,052,207 + -0.3
1,052,208 - +2.1
1,052,210 + -1.5
1,052,210 + -0.6
1,052,211 - +0.4
1,052,234 + +1.0
1,052,369 + +0.9
1,052,369 + -1.1
1,052,369 + +0.9
1,052,370 - +0.5
1,052,628 + +1.2
1,052,628 + +0.1
1,052,628 + +1.7
1,052,629 - +2.0
1,052,629 - +2.3
1,052,658 + +1.0
1,052,658 + +1.9
1,052,658 + +0.1
1,052,659 - +1.5
1,052,659 - +1.3

Or see this region's nucleotide sequence