Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01350

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01340 and ABZR87_RS01345 are separated by 82 nucleotidesABZR87_RS01345 and ABZR87_RS01350 are separated by 68 nucleotidesABZR87_RS01350 and ABZR87_RS01355 overlap by 4 nucleotides ABZR87_RS01340: ABZR87_RS01340 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 279,556 to 280,695 _RS01340 ABZR87_RS01345: ABZR87_RS01345 - aspartate 1-decarboxylase, at 280,778 to 281,140 _RS01345 ABZR87_RS01350: ABZR87_RS01350 - NAD(P) transhydrogenase subunit alpha, at 281,209 to 281,538 _RS01350 ABZR87_RS01355: ABZR87_RS01355 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 281,535 to 282,995 _RS01355 Position (kb) 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 280.243 kb on + strand, within ABZR87_RS01340at 280.498 kb on + strand, within ABZR87_RS01340at 280.499 kb on - strand, within ABZR87_RS01340at 280.543 kb on + strand, within ABZR87_RS01340at 280.543 kb on + strand, within ABZR87_RS01340at 280.551 kb on + strand, within ABZR87_RS01340at 280.693 kb on + strandat 280.950 kb on - strand, within ABZR87_RS01345at 281.263 kb on + strand, within ABZR87_RS01350at 281.263 kb on + strand, within ABZR87_RS01350at 281.263 kb on + strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.793 kb on + strand, within ABZR87_RS01355at 281.794 kb on - strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.876 kb on + strand, within ABZR87_RS01355at 281.877 kb on - strand, within ABZR87_RS01355at 281.877 kb on - strand, within ABZR87_RS01355at 282.028 kb on + strand, within ABZR87_RS01355at 282.029 kb on - strand, within ABZR87_RS01355at 282.039 kb on + strand, within ABZR87_RS01355at 282.039 kb on + strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.040 kb on - strand, within ABZR87_RS01355at 282.202 kb on + strand, within ABZR87_RS01355at 282.203 kb on - strand, within ABZR87_RS01355at 282.203 kb on - strand, within ABZR87_RS01355at 282.264 kb on + strand, within ABZR87_RS01355at 282.264 kb on + strand, within ABZR87_RS01355at 282.265 kb on - strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.363 kb on + strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355at 282.364 kb on - strand, within ABZR87_RS01355

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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280,243 + ABZR87_RS01340 0.60 +0.9
280,498 + ABZR87_RS01340 0.83 +0.2
280,499 - ABZR87_RS01340 0.83 -1.1
280,543 + ABZR87_RS01340 0.87 +0.4
280,543 + ABZR87_RS01340 0.87 +1.5
280,551 + ABZR87_RS01340 0.87 -0.1
280,693 + +1.1
280,950 - ABZR87_RS01345 0.47 -0.5
281,263 + ABZR87_RS01350 0.16 -1.5
281,263 + ABZR87_RS01350 0.16 -0.1
281,263 + ABZR87_RS01350 0.16 +1.0
281,264 - ABZR87_RS01350 0.17 +0.4
281,264 - ABZR87_RS01350 0.17 +0.7
281,264 - ABZR87_RS01350 0.17 +0.1
281,264 - ABZR87_RS01350 0.17 -0.2
281,264 - ABZR87_RS01350 0.17 +0.2
281,272 + ABZR87_RS01350 0.19 +1.5
281,272 + ABZR87_RS01350 0.19 +0.4
281,272 + ABZR87_RS01350 0.19 -0.1
281,307 + ABZR87_RS01350 0.30 -0.7
281,307 + ABZR87_RS01350 0.30 +1.0
281,307 + ABZR87_RS01350 0.30 +0.4
281,308 - ABZR87_RS01350 0.30 +0.4
281,308 - ABZR87_RS01350 0.30 -0.4
281,308 - ABZR87_RS01350 0.30 -0.5
281,562 + +0.7
281,562 + -0.0
281,562 + +0.1
281,562 + +1.5
281,562 + -1.8
281,562 + +0.1
281,563 - +0.4
281,563 - -1.6
281,563 - +1.7
281,563 - -0.6
281,691 + ABZR87_RS01355 0.11 +0.3
281,691 + ABZR87_RS01355 0.11 +1.9
281,691 + ABZR87_RS01355 0.11 +0.1
281,691 + ABZR87_RS01355 0.11 +0.9
281,691 + ABZR87_RS01355 0.11 +0.2
281,692 - ABZR87_RS01355 0.11 +0.4
281,692 - ABZR87_RS01355 0.11 -0.2
281,692 - ABZR87_RS01355 0.11 +0.9
281,692 - ABZR87_RS01355 0.11 +0.5
281,692 - ABZR87_RS01355 0.11 +0.1
281,692 - ABZR87_RS01355 0.11 +0.4
281,692 - ABZR87_RS01355 0.11 -0.2
281,692 - ABZR87_RS01355 0.11 +1.8
281,692 - ABZR87_RS01355 0.11 +0.2
281,793 + ABZR87_RS01355 0.18 +0.3
281,794 - ABZR87_RS01355 0.18 -0.8
281,876 + ABZR87_RS01355 0.23 -0.2
281,876 + ABZR87_RS01355 0.23 +1.6
281,876 + ABZR87_RS01355 0.23 +0.1
281,876 + ABZR87_RS01355 0.23 -0.7
281,876 + ABZR87_RS01355 0.23 -0.2
281,877 - ABZR87_RS01355 0.23 +1.2
281,877 - ABZR87_RS01355 0.23 -0.1
282,028 + ABZR87_RS01355 0.34 -0.3
282,029 - ABZR87_RS01355 0.34 -0.1
282,039 + ABZR87_RS01355 0.34 -0.6
282,039 + ABZR87_RS01355 0.34 -1.0
282,040 - ABZR87_RS01355 0.35 +0.5
282,040 - ABZR87_RS01355 0.35 +0.2
282,040 - ABZR87_RS01355 0.35 +0.5
282,040 - ABZR87_RS01355 0.35 +1.1
282,202 + ABZR87_RS01355 0.46 +0.1
282,203 - ABZR87_RS01355 0.46 -0.4
282,203 - ABZR87_RS01355 0.46 +0.1
282,264 + ABZR87_RS01355 0.50 +1.1
282,264 + ABZR87_RS01355 0.50 -0.8
282,265 - ABZR87_RS01355 0.50 -0.2
282,363 + ABZR87_RS01355 0.57 +0.0
282,363 + ABZR87_RS01355 0.57 +0.5
282,363 + ABZR87_RS01355 0.57 +0.9
282,363 + ABZR87_RS01355 0.57 -0.4
282,363 + ABZR87_RS01355 0.57 -0.8
282,364 - ABZR87_RS01355 0.57 +0.4
282,364 - ABZR87_RS01355 0.57 -1.1
282,364 - ABZR87_RS01355 0.57 +0.1
282,364 - ABZR87_RS01355 0.57 -0.1

Or see this region's nucleotide sequence