Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01340

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01330 and ABZR87_RS01335 overlap by 4 nucleotidesABZR87_RS01335 and ABZR87_RS01340 are separated by 287 nucleotidesABZR87_RS01340 and ABZR87_RS01345 are separated by 82 nucleotidesABZR87_RS01345 and ABZR87_RS01350 are separated by 68 nucleotidesABZR87_RS01350 and ABZR87_RS01355 overlap by 4 nucleotides ABZR87_RS01330: ABZR87_RS01330 - tRNA 2-thiouridine(34) synthase MnmA, at 277,665 to 278,777 _RS01330 ABZR87_RS01335: ABZR87_RS01335 - NUDIX hydrolase, at 278,774 to 279,268 _RS01335 ABZR87_RS01340: ABZR87_RS01340 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 279,556 to 280,695 _RS01340 ABZR87_RS01345: ABZR87_RS01345 - aspartate 1-decarboxylase, at 280,778 to 281,140 _RS01345 ABZR87_RS01350: ABZR87_RS01350 - NAD(P) transhydrogenase subunit alpha, at 281,209 to 281,538 _RS01350 ABZR87_RS01355: ABZR87_RS01355 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 281,535 to 282,995 _RS01355 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2at 278.797 kb on - strandat 278.797 kb on - strandat 278.819 kb on - strandat 278.851 kb on - strand, within ABZR87_RS01335at 279.007 kb on - strand, within ABZR87_RS01335at 279.007 kb on - strand, within ABZR87_RS01335at 279.007 kb on - strand, within ABZR87_RS01335at 279.007 kb on - strand, within ABZR87_RS01335at 279.007 kb on - strand, within ABZR87_RS01335at 279.007 kb on - strand, within ABZR87_RS01335at 279.007 kb on - strand, within ABZR87_RS01335at 279.049 kb on - strand, within ABZR87_RS01335at 279.049 kb on - strand, within ABZR87_RS01335at 279.049 kb on - strand, within ABZR87_RS01335at 279.049 kb on - strand, within ABZR87_RS01335at 279.302 kb on - strandat 279.302 kb on - strandat 279.474 kb on + strandat 279.475 kb on - strandat 279.475 kb on - strandat 279.528 kb on + strandat 279.529 kb on - strandat 279.534 kb on + strandat 279.534 kb on + strandat 279.534 kb on + strandat 279.534 kb on + strandat 279.535 kb on - strandat 279.631 kb on + strandat 279.631 kb on + strandat 279.631 kb on + strandat 279.632 kb on - strandat 279.703 kb on + strand, within ABZR87_RS01340at 279.703 kb on + strand, within ABZR87_RS01340at 279.703 kb on + strand, within ABZR87_RS01340at 279.703 kb on + strand, within ABZR87_RS01340at 279.967 kb on + strand, within ABZR87_RS01340at 279.967 kb on + strand, within ABZR87_RS01340at 279.969 kb on + strand, within ABZR87_RS01340at 280.243 kb on + strand, within ABZR87_RS01340at 280.498 kb on + strand, within ABZR87_RS01340at 280.499 kb on - strand, within ABZR87_RS01340at 280.543 kb on + strand, within ABZR87_RS01340at 280.543 kb on + strand, within ABZR87_RS01340at 280.551 kb on + strand, within ABZR87_RS01340at 280.693 kb on + strandat 280.950 kb on - strand, within ABZR87_RS01345at 281.263 kb on + strand, within ABZR87_RS01350at 281.263 kb on + strand, within ABZR87_RS01350at 281.263 kb on + strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.264 kb on - strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.272 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.307 kb on + strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.308 kb on - strand, within ABZR87_RS01350at 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.562 kb on + strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.563 kb on - strandat 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.691 kb on + strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355at 281.692 kb on - strand, within ABZR87_RS01355

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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278,797 - -0.5
278,797 - -0.6
278,819 - +0.6
278,851 - ABZR87_RS01335 0.16 -0.2
279,007 - ABZR87_RS01335 0.47 -0.5
279,007 - ABZR87_RS01335 0.47 -0.9
279,007 - ABZR87_RS01335 0.47 -0.1
279,007 - ABZR87_RS01335 0.47 +0.5
279,007 - ABZR87_RS01335 0.47 +0.2
279,007 - ABZR87_RS01335 0.47 -0.3
279,007 - ABZR87_RS01335 0.47 -1.3
279,049 - ABZR87_RS01335 0.56 +1.0
279,049 - ABZR87_RS01335 0.56 -0.1
279,049 - ABZR87_RS01335 0.56 -0.2
279,049 - ABZR87_RS01335 0.56 -0.1
279,302 - -0.0
279,302 - -0.6
279,474 + -0.1
279,475 - +0.6
279,475 - -0.9
279,528 + +2.1
279,529 - -0.8
279,534 + +0.4
279,534 + -0.1
279,534 + +0.7
279,534 + +0.0
279,535 - +0.4
279,631 + +0.4
279,631 + -0.3
279,631 + +0.6
279,632 - +0.7
279,703 + ABZR87_RS01340 0.13 -0.3
279,703 + ABZR87_RS01340 0.13 +0.4
279,703 + ABZR87_RS01340 0.13 +0.5
279,703 + ABZR87_RS01340 0.13 +0.3
279,967 + ABZR87_RS01340 0.36 -0.4
279,967 + ABZR87_RS01340 0.36 +0.4
279,969 + ABZR87_RS01340 0.36 -0.2
280,243 + ABZR87_RS01340 0.60 +0.9
280,498 + ABZR87_RS01340 0.83 +0.2
280,499 - ABZR87_RS01340 0.83 -1.1
280,543 + ABZR87_RS01340 0.87 +0.4
280,543 + ABZR87_RS01340 0.87 +1.5
280,551 + ABZR87_RS01340 0.87 -0.1
280,693 + +1.1
280,950 - ABZR87_RS01345 0.47 -0.5
281,263 + ABZR87_RS01350 0.16 -1.5
281,263 + ABZR87_RS01350 0.16 -0.1
281,263 + ABZR87_RS01350 0.16 +1.0
281,264 - ABZR87_RS01350 0.17 +0.4
281,264 - ABZR87_RS01350 0.17 +0.7
281,264 - ABZR87_RS01350 0.17 +0.1
281,264 - ABZR87_RS01350 0.17 -0.2
281,264 - ABZR87_RS01350 0.17 +0.2
281,272 + ABZR87_RS01350 0.19 +1.5
281,272 + ABZR87_RS01350 0.19 +0.4
281,272 + ABZR87_RS01350 0.19 -0.1
281,307 + ABZR87_RS01350 0.30 -0.7
281,307 + ABZR87_RS01350 0.30 +1.0
281,307 + ABZR87_RS01350 0.30 +0.4
281,308 - ABZR87_RS01350 0.30 +0.4
281,308 - ABZR87_RS01350 0.30 -0.4
281,308 - ABZR87_RS01350 0.30 -0.5
281,562 + +0.7
281,562 + -0.0
281,562 + +0.1
281,562 + +1.5
281,562 + -1.8
281,562 + +0.1
281,563 - +0.4
281,563 - -1.6
281,563 - +1.7
281,563 - -0.6
281,691 + ABZR87_RS01355 0.11 +0.3
281,691 + ABZR87_RS01355 0.11 +1.9
281,691 + ABZR87_RS01355 0.11 +0.1
281,691 + ABZR87_RS01355 0.11 +0.9
281,691 + ABZR87_RS01355 0.11 +0.2
281,692 - ABZR87_RS01355 0.11 +0.4
281,692 - ABZR87_RS01355 0.11 -0.2
281,692 - ABZR87_RS01355 0.11 +0.9
281,692 - ABZR87_RS01355 0.11 +0.5
281,692 - ABZR87_RS01355 0.11 +0.1
281,692 - ABZR87_RS01355 0.11 +0.4
281,692 - ABZR87_RS01355 0.11 -0.2
281,692 - ABZR87_RS01355 0.11 +1.8
281,692 - ABZR87_RS01355 0.11 +0.2

Or see this region's nucleotide sequence