Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3376

Experiment: KB with Harmol Hydrochloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3375 and Psyr_3376 are separated by 19 nucleotidesPsyr_3376 and Psyr_3377 are separated by 539 nucleotidesPsyr_3377 and Psyr_3378 overlap by 4 nucleotides Psyr_3375: Psyr_3375 - Heavy metal sensor kinase, at 4,033,610 to 4,034,998 _3375 Psyr_3376: Psyr_3376 - lyase, putative, at 4,035,018 to 4,035,686 _3376 Psyr_3377: Psyr_3377 - transcriptional regulator, MarR family, at 4,036,226 to 4,036,678 _3377 Psyr_3378: Psyr_3378 - Fusaric acid resistance protein conserved region, at 4,036,675 to 4,038,762 _3378 Position (kb) 4035 4036Strain fitness (log2 ratio) -2 -1 0 1at 4034.110 kb on + strand, within Psyr_3375at 4034.110 kb on + strand, within Psyr_3375at 4034.110 kb on + strand, within Psyr_3375at 4034.110 kb on + strand, within Psyr_3375at 4034.111 kb on - strand, within Psyr_3375at 4034.111 kb on - strand, within Psyr_3375at 4034.111 kb on - strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.114 kb on + strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.115 kb on - strand, within Psyr_3375at 4034.116 kb on + strand, within Psyr_3375at 4034.116 kb on + strand, within Psyr_3375at 4034.117 kb on - strand, within Psyr_3375at 4034.117 kb on - strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.118 kb on + strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.119 kb on - strand, within Psyr_3375at 4034.159 kb on + strand, within Psyr_3375at 4034.160 kb on - strand, within Psyr_3375at 4034.160 kb on - strand, within Psyr_3375at 4034.261 kb on - strand, within Psyr_3375at 4034.441 kb on + strand, within Psyr_3375at 4034.441 kb on + strand, within Psyr_3375at 4034.595 kb on - strand, within Psyr_3375at 4035.052 kb on + strandat 4035.053 kb on - strandat 4035.103 kb on + strand, within Psyr_3376at 4035.103 kb on + strand, within Psyr_3376at 4035.103 kb on + strand, within Psyr_3376at 4035.103 kb on + strand, within Psyr_3376at 4035.104 kb on - strand, within Psyr_3376at 4035.104 kb on - strand, within Psyr_3376at 4035.121 kb on + strand, within Psyr_3376at 4035.121 kb on + strand, within Psyr_3376at 4035.122 kb on - strand, within Psyr_3376at 4035.122 kb on - strand, within Psyr_3376at 4035.161 kb on - strand, within Psyr_3376at 4035.220 kb on + strand, within Psyr_3376at 4035.220 kb on + strand, within Psyr_3376at 4035.221 kb on - strand, within Psyr_3376at 4035.221 kb on - strand, within Psyr_3376at 4035.334 kb on + strand, within Psyr_3376at 4035.334 kb on + strand, within Psyr_3376at 4035.334 kb on + strand, within Psyr_3376at 4035.334 kb on + strand, within Psyr_3376at 4035.335 kb on - strand, within Psyr_3376at 4035.335 kb on - strand, within Psyr_3376at 4035.340 kb on + strand, within Psyr_3376at 4035.340 kb on + strand, within Psyr_3376at 4035.341 kb on - strand, within Psyr_3376at 4035.341 kb on - strand, within Psyr_3376at 4035.341 kb on - strand, within Psyr_3376at 4035.341 kb on - strand, within Psyr_3376at 4035.341 kb on - strand, within Psyr_3376at 4035.463 kb on + strand, within Psyr_3376at 4035.589 kb on + strand, within Psyr_3376at 4035.610 kb on - strand, within Psyr_3376at 4035.852 kb on - strandat 4035.952 kb on + strandat 4035.952 kb on + strandat 4035.953 kb on - strandat 4036.017 kb on + strandat 4036.018 kb on - strandat 4036.060 kb on + strandat 4036.060 kb on + strandat 4036.061 kb on - strandat 4036.061 kb on - strandat 4036.061 kb on - strandat 4036.141 kb on - strandat 4036.166 kb on - strandat 4036.203 kb on + strandat 4036.319 kb on + strand, within Psyr_3377at 4036.320 kb on - strand, within Psyr_3377at 4036.629 kb on + strand, within Psyr_3377

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmol Hydrochloride 10 mM
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4,034,110 + Psyr_3375 0.36 +1.6
4,034,110 + Psyr_3375 0.36 -0.8
4,034,110 + Psyr_3375 0.36 -1.0
4,034,110 + Psyr_3375 0.36 -1.5
4,034,111 - Psyr_3375 0.36 +0.6
4,034,111 - Psyr_3375 0.36 +1.1
4,034,111 - Psyr_3375 0.36 +0.9
4,034,114 + Psyr_3375 0.36 -0.7
4,034,114 + Psyr_3375 0.36 -0.2
4,034,114 + Psyr_3375 0.36 -0.2
4,034,114 + Psyr_3375 0.36 -0.4
4,034,114 + Psyr_3375 0.36 +0.3
4,034,114 + Psyr_3375 0.36 +1.1
4,034,114 + Psyr_3375 0.36 +0.1
4,034,114 + Psyr_3375 0.36 -0.9
4,034,114 + Psyr_3375 0.36 -0.6
4,034,114 + Psyr_3375 0.36 -1.2
4,034,114 + Psyr_3375 0.36 +1.1
4,034,114 + Psyr_3375 0.36 -0.6
4,034,114 + Psyr_3375 0.36 -1.1
4,034,114 + Psyr_3375 0.36 -0.9
4,034,114 + Psyr_3375 0.36 -0.3
4,034,115 - Psyr_3375 0.36 -0.3
4,034,115 - Psyr_3375 0.36 +0.4
4,034,115 - Psyr_3375 0.36 +0.1
4,034,115 - Psyr_3375 0.36 +0.8
4,034,115 - Psyr_3375 0.36 -0.9
4,034,115 - Psyr_3375 0.36 -0.4
4,034,115 - Psyr_3375 0.36 +0.1
4,034,115 - Psyr_3375 0.36 -0.6
4,034,115 - Psyr_3375 0.36 +0.7
4,034,115 - Psyr_3375 0.36 +0.2
4,034,115 - Psyr_3375 0.36 -0.3
4,034,115 - Psyr_3375 0.36 -0.9
4,034,115 - Psyr_3375 0.36 -0.7
4,034,115 - Psyr_3375 0.36 -0.4
4,034,116 + Psyr_3375 0.36 +0.6
4,034,116 + Psyr_3375 0.36 -0.8
4,034,117 - Psyr_3375 0.37 -0.4
4,034,117 - Psyr_3375 0.37 +0.6
4,034,118 + Psyr_3375 0.37 +0.6
4,034,118 + Psyr_3375 0.37 +0.1
4,034,118 + Psyr_3375 0.37 +0.7
4,034,118 + Psyr_3375 0.37 +0.5
4,034,118 + Psyr_3375 0.37 -1.2
4,034,118 + Psyr_3375 0.37 +0.7
4,034,118 + Psyr_3375 0.37 -1.1
4,034,118 + Psyr_3375 0.37 -2.0
4,034,118 + Psyr_3375 0.37 -0.1
4,034,118 + Psyr_3375 0.37 +0.6
4,034,118 + Psyr_3375 0.37 -0.8
4,034,118 + Psyr_3375 0.37 +0.4
4,034,118 + Psyr_3375 0.37 +0.6
4,034,118 + Psyr_3375 0.37 +0.1
4,034,118 + Psyr_3375 0.37 +1.3
4,034,118 + Psyr_3375 0.37 -0.4
4,034,118 + Psyr_3375 0.37 +0.7
4,034,118 + Psyr_3375 0.37 +0.5
4,034,118 + Psyr_3375 0.37 +1.4
4,034,118 + Psyr_3375 0.37 -0.6
4,034,118 + Psyr_3375 0.37 -0.4
4,034,118 + Psyr_3375 0.37 -0.1
4,034,118 + Psyr_3375 0.37 +0.3
4,034,119 - Psyr_3375 0.37 -0.1
4,034,119 - Psyr_3375 0.37 -0.0
4,034,119 - Psyr_3375 0.37 -0.1
4,034,119 - Psyr_3375 0.37 +0.8
4,034,119 - Psyr_3375 0.37 +0.2
4,034,119 - Psyr_3375 0.37 -0.2
4,034,119 - Psyr_3375 0.37 +0.3
4,034,119 - Psyr_3375 0.37 -0.4
4,034,119 - Psyr_3375 0.37 -0.4
4,034,119 - Psyr_3375 0.37 -1.2
4,034,119 - Psyr_3375 0.37 -0.5
4,034,119 - Psyr_3375 0.37 -1.3
4,034,119 - Psyr_3375 0.37 -0.3
4,034,119 - Psyr_3375 0.37 -1.1
4,034,119 - Psyr_3375 0.37 -0.8
4,034,119 - Psyr_3375 0.37 -1.9
4,034,119 - Psyr_3375 0.37 +1.1
4,034,119 - Psyr_3375 0.37 -0.3
4,034,119 - Psyr_3375 0.37 -0.9
4,034,159 + Psyr_3375 0.40 +0.3
4,034,160 - Psyr_3375 0.40 +0.5
4,034,160 - Psyr_3375 0.40 -0.5
4,034,261 - Psyr_3375 0.47 -0.4
4,034,441 + Psyr_3375 0.60 -1.0
4,034,441 + Psyr_3375 0.60 -0.3
4,034,595 - Psyr_3375 0.71 -0.6
4,035,052 + -0.4
4,035,053 - -1.3
4,035,103 + Psyr_3376 0.13 -1.3
4,035,103 + Psyr_3376 0.13 -0.5
4,035,103 + Psyr_3376 0.13 -2.6
4,035,103 + Psyr_3376 0.13 -0.1
4,035,104 - Psyr_3376 0.13 +0.2
4,035,104 - Psyr_3376 0.13 -0.8
4,035,121 + Psyr_3376 0.15 -1.5
4,035,121 + Psyr_3376 0.15 -1.0
4,035,122 - Psyr_3376 0.16 -0.9
4,035,122 - Psyr_3376 0.16 -2.4
4,035,161 - Psyr_3376 0.21 -0.1
4,035,220 + Psyr_3376 0.30 -1.0
4,035,220 + Psyr_3376 0.30 -0.5
4,035,221 - Psyr_3376 0.30 -0.3
4,035,221 - Psyr_3376 0.30 -0.5
4,035,334 + Psyr_3376 0.47 -1.2
4,035,334 + Psyr_3376 0.47 +1.0
4,035,334 + Psyr_3376 0.47 -0.0
4,035,334 + Psyr_3376 0.47 -0.5
4,035,335 - Psyr_3376 0.47 +0.6
4,035,335 - Psyr_3376 0.47 -0.1
4,035,340 + Psyr_3376 0.48 +0.6
4,035,340 + Psyr_3376 0.48 +0.1
4,035,341 - Psyr_3376 0.48 -0.4
4,035,341 - Psyr_3376 0.48 -1.5
4,035,341 - Psyr_3376 0.48 -2.0
4,035,341 - Psyr_3376 0.48 +0.1
4,035,341 - Psyr_3376 0.48 -0.1
4,035,463 + Psyr_3376 0.67 +0.9
4,035,589 + Psyr_3376 0.85 +0.3
4,035,610 - Psyr_3376 0.88 -0.1
4,035,852 - -0.3
4,035,952 + -0.1
4,035,952 + +0.3
4,035,953 - -0.3
4,036,017 + -0.4
4,036,018 - -0.9
4,036,060 + +0.1
4,036,060 + +0.0
4,036,061 - -1.6
4,036,061 - +0.3
4,036,061 - -0.8
4,036,141 - -0.9
4,036,166 - -0.9
4,036,203 + -1.9
4,036,319 + Psyr_3377 0.21 -0.5
4,036,320 - Psyr_3377 0.21 -0.8
4,036,629 + Psyr_3377 0.89 +0.1

Or see this region's nucleotide sequence