Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20155 and ABZR87_RS20160 are separated by 2 nucleotides ABZR87_RS20160 and ABZR87_RS20165 are separated by 92 nucleotides ABZR87_RS20165 and ABZR87_RS20170 are separated by 5 nucleotides
ABZR87_RS20155: ABZR87_RS20155 - type VI secretion system-associated protein TagF, at 905,721 to 906,716
_RS20155
ABZR87_RS20160: ABZR87_RS20160 - OmpA family protein, at 906,719 to 907,537
_RS20160
ABZR87_RS20165: ABZR87_RS20165 - TIGR04222 domain-containing membrane protein, at 907,630 to 909,072
_RS20165
ABZR87_RS20170: ABZR87_RS20170 - type VI secretion system protein TssA, at 909,078 to 910,154
_RS20170
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 906.645 kb on + strand at 906.686 kb on + strand at 906.788 kb on + strand at 906.788 kb on + strand at 906.789 kb on - strand at 906.789 kb on - strand at 906.921 kb on - strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.142 kb on + strand, within ABZR87_RS20160 at 907.403 kb on + strand, within ABZR87_RS20160 at 907.403 kb on + strand, within ABZR87_RS20160 at 907.404 kb on - strand, within ABZR87_RS20160 at 907.531 kb on + strand at 907.603 kb on + strand at 907.603 kb on + strand at 907.603 kb on + strand at 907.676 kb on + strand at 907.677 kb on - strand at 907.677 kb on - strand at 907.677 kb on - strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.678 kb on + strand at 907.679 kb on - strand at 907.679 kb on - strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.680 kb on + strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.681 kb on - strand at 907.702 kb on + strand at 907.702 kb on + strand at 907.702 kb on + strand at 907.703 kb on - strand at 907.703 kb on - strand at 907.703 kb on - strand at 907.717 kb on + strand at 907.804 kb on + strand, within ABZR87_RS20165 at 907.805 kb on - strand, within ABZR87_RS20165 at 907.805 kb on - strand, within ABZR87_RS20165 at 907.888 kb on + strand, within ABZR87_RS20165 at 907.921 kb on + strand, within ABZR87_RS20165 at 907.921 kb on + strand, within ABZR87_RS20165 at 908.081 kb on + strand, within ABZR87_RS20165 at 908.082 kb on - strand, within ABZR87_RS20165 at 908.082 kb on - strand, within ABZR87_RS20165 at 908.152 kb on + strand, within ABZR87_RS20165 at 908.153 kb on - strand, within ABZR87_RS20165 at 908.153 kb on - strand, within ABZR87_RS20165 at 908.179 kb on + strand, within ABZR87_RS20165 at 908.179 kb on + strand, within ABZR87_RS20165 at 908.180 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.237 kb on - strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.416 kb on + strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.417 kb on - strand, within ABZR87_RS20165 at 908.731 kb on + strand, within ABZR87_RS20165 at 908.732 kb on - strand, within ABZR87_RS20165 at 908.732 kb on - strand, within ABZR87_RS20165 at 908.809 kb on + strand, within ABZR87_RS20165 at 909.031 kb on - strand at 909.031 kb on - strand at 909.071 kb on - strand at 909.217 kb on + strand, within ABZR87_RS20170 at 909.217 kb on + strand, within ABZR87_RS20170 at 909.218 kb on - strand, within ABZR87_RS20170 at 909.218 kb on - strand, within ABZR87_RS20170 at 909.218 kb on - strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.559 kb on + strand, within ABZR87_RS20170 at 909.700 kb on + strand, within ABZR87_RS20170 at 909.720 kb on + strand, within ABZR87_RS20170 at 909.720 kb on + strand, within ABZR87_RS20170 at 909.720 kb on + strand, within ABZR87_RS20170 at 909.721 kb on - strand, within ABZR87_RS20170 at 909.721 kb on - strand, within ABZR87_RS20170 at 909.818 kb on - strand, within ABZR87_RS20170
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 906,645 + -0.2 906,686 + -0.1 906,788 + -1.5 906,788 + -0.5 906,789 - +1.3 906,789 - +0.9 906,921 - ABZR87_RS20160 0.25 +2.8 907,142 + ABZR87_RS20160 0.52 +0.1 907,142 + ABZR87_RS20160 0.52 -0.5 907,142 + ABZR87_RS20160 0.52 +0.3 907,142 + ABZR87_RS20160 0.52 +1.1 907,142 + ABZR87_RS20160 0.52 -0.9 907,403 + ABZR87_RS20160 0.84 +1.0 907,403 + ABZR87_RS20160 0.84 -2.4 907,404 - ABZR87_RS20160 0.84 -0.1 907,531 + +0.8 907,603 + +0.4 907,603 + -2.4 907,603 + -0.5 907,676 + -1.2 907,677 - +1.7 907,677 - +0.8 907,677 - +0.4 907,678 + +0.2 907,678 + -2.5 907,678 + +0.2 907,678 + -0.7 907,679 - +0.8 907,679 - +0.8 907,680 + +0.3 907,680 + +0.3 907,680 + +1.0 907,680 + +0.4 907,680 + +0.3 907,680 + +1.1 907,680 + +0.8 907,680 + +0.4 907,681 - -1.3 907,681 - -0.3 907,681 - -0.4 907,681 - -0.2 907,681 - +1.2 907,681 - +0.9 907,702 + -2.8 907,702 + +0.1 907,702 + -0.6 907,703 - +0.1 907,703 - +0.7 907,703 - -1.9 907,717 + +0.7 907,804 + ABZR87_RS20165 0.12 +0.9 907,805 - ABZR87_RS20165 0.12 +0.0 907,805 - ABZR87_RS20165 0.12 -0.8 907,888 + ABZR87_RS20165 0.18 +0.3 907,921 + ABZR87_RS20165 0.20 +0.6 907,921 + ABZR87_RS20165 0.20 -0.1 908,081 + ABZR87_RS20165 0.31 +0.2 908,082 - ABZR87_RS20165 0.31 +0.1 908,082 - ABZR87_RS20165 0.31 +0.4 908,152 + ABZR87_RS20165 0.36 +2.8 908,153 - ABZR87_RS20165 0.36 +0.0 908,153 - ABZR87_RS20165 0.36 +1.2 908,179 + ABZR87_RS20165 0.38 +0.3 908,179 + ABZR87_RS20165 0.38 +0.9 908,180 - ABZR87_RS20165 0.38 +0.4 908,237 - ABZR87_RS20165 0.42 -1.0 908,237 - ABZR87_RS20165 0.42 +1.7 908,237 - ABZR87_RS20165 0.42 +0.8 908,237 - ABZR87_RS20165 0.42 +0.4 908,416 + ABZR87_RS20165 0.54 -0.2 908,416 + ABZR87_RS20165 0.54 +1.2 908,416 + ABZR87_RS20165 0.54 +0.0 908,416 + ABZR87_RS20165 0.54 -0.1 908,416 + ABZR87_RS20165 0.54 -3.9 908,416 + ABZR87_RS20165 0.54 +0.4 908,417 - ABZR87_RS20165 0.55 -0.4 908,417 - ABZR87_RS20165 0.55 -1.2 908,417 - ABZR87_RS20165 0.55 -0.4 908,417 - ABZR87_RS20165 0.55 -0.2 908,417 - ABZR87_RS20165 0.55 +1.2 908,417 - ABZR87_RS20165 0.55 +1.2 908,417 - ABZR87_RS20165 0.55 +0.3 908,417 - ABZR87_RS20165 0.55 +0.6 908,731 + ABZR87_RS20165 0.76 -1.4 908,732 - ABZR87_RS20165 0.76 +0.1 908,732 - ABZR87_RS20165 0.76 +0.8 908,809 + ABZR87_RS20165 0.82 +0.1 909,031 - -2.3 909,031 - +0.4 909,071 - +0.6 909,217 + ABZR87_RS20170 0.13 -1.5 909,217 + ABZR87_RS20170 0.13 -0.2 909,218 - ABZR87_RS20170 0.13 +0.0 909,218 - ABZR87_RS20170 0.13 +0.6 909,218 - ABZR87_RS20170 0.13 +0.7 909,559 + ABZR87_RS20170 0.45 +0.4 909,559 + ABZR87_RS20170 0.45 +0.5 909,559 + ABZR87_RS20170 0.45 +0.2 909,559 + ABZR87_RS20170 0.45 -0.2 909,700 + ABZR87_RS20170 0.58 -0.3 909,720 + ABZR87_RS20170 0.60 -1.8 909,720 + ABZR87_RS20170 0.60 +0.3 909,720 + ABZR87_RS20170 0.60 +1.5 909,721 - ABZR87_RS20170 0.60 +0.7 909,721 - ABZR87_RS20170 0.60 -0.3 909,818 - ABZR87_RS20170 0.69 -1.8
Or see this region's nucleotide sequence