Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20807

Experiment: D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20805 and SM_b20806 are separated by 127 nucleotidesSM_b20806 and SM_b20807 are separated by 132 nucleotidesSM_b20807 and SM_b20808 overlap by 25 nucleotidesSM_b20808 and SM_b20809 are separated by 236 nucleotides SM_b20805: SM_b20805 - glycosyltransferase, at 590,027 to 590,932 _b20805 SM_b20806: SM_b20806 - hypothetical protein, at 591,060 to 591,749 _b20806 SM_b20807: SM_b20807 - hypothetical protein, at 591,882 to 593,519 _b20807 SM_b20808: SM_b20808 - hypothetical protein, at 593,495 to 594,271 _b20808 SM_b20809: SM_b20809 - arabinose-5-phosphate isomerase, at 594,508 to 595,497 _b20809 Position (kb) 591 592 593 594Strain fitness (log2 ratio) -2 -1 0 1 2 3at 590.904 kb on - strandat 590.953 kb on + strandat 590.963 kb on + strandat 590.963 kb on + strandat 590.964 kb on - strandat 591.011 kb on + strandat 591.012 kb on - strandat 591.078 kb on + strandat 591.079 kb on - strandat 591.079 kb on - strandat 591.134 kb on + strand, within SM_b20806at 591.148 kb on + strand, within SM_b20806at 591.199 kb on + strand, within SM_b20806at 591.207 kb on + strand, within SM_b20806at 591.258 kb on + strand, within SM_b20806at 591.540 kb on + strand, within SM_b20806at 591.540 kb on + strand, within SM_b20806at 591.541 kb on - strand, within SM_b20806at 591.544 kb on + strand, within SM_b20806at 591.634 kb on - strand, within SM_b20806at 591.647 kb on + strand, within SM_b20806at 591.727 kb on + strandat 591.728 kb on - strandat 591.731 kb on + strandat 591.804 kb on + strandat 591.967 kb on + strandat 591.967 kb on + strandat 591.967 kb on + strandat 591.967 kb on + strandat 591.967 kb on + strandat 592.062 kb on + strand, within SM_b20807at 592.062 kb on + strand, within SM_b20807at 592.070 kb on - strand, within SM_b20807at 592.070 kb on - strand, within SM_b20807at 592.070 kb on - strand, within SM_b20807at 592.164 kb on + strand, within SM_b20807at 592.164 kb on + strand, within SM_b20807at 592.164 kb on + strand, within SM_b20807at 592.165 kb on - strand, within SM_b20807at 592.200 kb on + strand, within SM_b20807at 592.232 kb on - strand, within SM_b20807at 592.238 kb on + strand, within SM_b20807at 592.406 kb on - strand, within SM_b20807at 592.494 kb on + strand, within SM_b20807at 592.494 kb on + strand, within SM_b20807at 592.495 kb on - strand, within SM_b20807at 592.539 kb on + strand, within SM_b20807at 592.539 kb on + strand, within SM_b20807at 592.540 kb on - strand, within SM_b20807at 592.551 kb on - strand, within SM_b20807at 592.605 kb on + strand, within SM_b20807at 592.606 kb on - strand, within SM_b20807at 592.606 kb on - strand, within SM_b20807at 592.671 kb on + strand, within SM_b20807at 592.685 kb on + strand, within SM_b20807at 592.686 kb on - strand, within SM_b20807at 592.740 kb on - strand, within SM_b20807at 592.839 kb on + strand, within SM_b20807at 592.876 kb on + strand, within SM_b20807at 592.922 kb on - strand, within SM_b20807at 592.922 kb on - strand, within SM_b20807at 592.924 kb on + strand, within SM_b20807at 592.925 kb on - strand, within SM_b20807at 592.939 kb on + strand, within SM_b20807at 592.940 kb on - strand, within SM_b20807at 592.940 kb on - strand, within SM_b20807at 592.940 kb on - strand, within SM_b20807at 593.004 kb on + strand, within SM_b20807at 593.005 kb on - strand, within SM_b20807at 593.005 kb on - strand, within SM_b20807at 593.166 kb on + strand, within SM_b20807at 593.166 kb on + strand, within SM_b20807at 593.166 kb on + strand, within SM_b20807at 593.360 kb on + strandat 593.457 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.497 kb on - strandat 593.498 kb on + strandat 593.703 kb on + strand, within SM_b20808at 593.704 kb on - strand, within SM_b20808at 593.772 kb on + strand, within SM_b20808at 593.819 kb on - strandat 593.895 kb on + strand, within SM_b20808at 593.895 kb on + strand, within SM_b20808at 593.929 kb on - strand, within SM_b20808at 593.941 kb on + strand, within SM_b20808at 593.950 kb on + strand, within SM_b20808at 593.950 kb on + strand, within SM_b20808at 593.960 kb on + strand, within SM_b20808at 593.960 kb on + strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 594.160 kb on + strand, within SM_b20808at 594.273 kb on + strandat 594.274 kb on - strandat 594.274 kb on - strandat 594.274 kb on - strandat 594.288 kb on - strandat 594.338 kb on + strandat 594.372 kb on + strandat 594.473 kb on + strandat 594.515 kb on + strandat 594.516 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
remove
590,904 - -0.2
590,953 + -0.1
590,963 + +0.5
590,963 + -0.9
590,964 - +1.0
591,011 + -1.6
591,012 - -0.0
591,078 + -1.7
591,079 - +0.3
591,079 - +2.0
591,134 + SM_b20806 0.11 -0.3
591,148 + SM_b20806 0.13 +0.3
591,199 + SM_b20806 0.20 +2.6
591,207 + SM_b20806 0.21 +0.6
591,258 + SM_b20806 0.29 +0.1
591,540 + SM_b20806 0.70 +0.5
591,540 + SM_b20806 0.70 +0.8
591,541 - SM_b20806 0.70 +0.1
591,544 + SM_b20806 0.70 +1.4
591,634 - SM_b20806 0.83 +1.4
591,647 + SM_b20806 0.85 +3.0
591,727 + +0.3
591,728 - -0.6
591,731 + +0.1
591,804 + -0.3
591,967 + -0.7
591,967 + -1.8
591,967 + +0.8
591,967 + -1.1
591,967 + -0.5
592,062 + SM_b20807 0.11 -0.3
592,062 + SM_b20807 0.11 -0.5
592,070 - SM_b20807 0.11 -1.5
592,070 - SM_b20807 0.11 -0.7
592,070 - SM_b20807 0.11 +1.1
592,164 + SM_b20807 0.17 -1.6
592,164 + SM_b20807 0.17 -0.5
592,164 + SM_b20807 0.17 -0.4
592,165 - SM_b20807 0.17 +1.1
592,200 + SM_b20807 0.19 +0.2
592,232 - SM_b20807 0.21 -1.1
592,238 + SM_b20807 0.22 +0.1
592,406 - SM_b20807 0.32 -0.1
592,494 + SM_b20807 0.37 -0.9
592,494 + SM_b20807 0.37 -1.2
592,495 - SM_b20807 0.37 -0.2
592,539 + SM_b20807 0.40 -0.1
592,539 + SM_b20807 0.40 -0.4
592,540 - SM_b20807 0.40 -1.4
592,551 - SM_b20807 0.41 -1.0
592,605 + SM_b20807 0.44 +0.6
592,606 - SM_b20807 0.44 -1.2
592,606 - SM_b20807 0.44 -0.7
592,671 + SM_b20807 0.48 -0.2
592,685 + SM_b20807 0.49 +0.1
592,686 - SM_b20807 0.49 +0.5
592,740 - SM_b20807 0.52 +0.8
592,839 + SM_b20807 0.58 -0.6
592,876 + SM_b20807 0.61 +0.2
592,922 - SM_b20807 0.63 -1.0
592,922 - SM_b20807 0.63 +0.4
592,924 + SM_b20807 0.64 +1.4
592,925 - SM_b20807 0.64 -0.9
592,939 + SM_b20807 0.65 -1.3
592,940 - SM_b20807 0.65 -0.6
592,940 - SM_b20807 0.65 -2.2
592,940 - SM_b20807 0.65 -0.3
593,004 + SM_b20807 0.68 -2.0
593,005 - SM_b20807 0.69 -0.1
593,005 - SM_b20807 0.69 -1.3
593,166 + SM_b20807 0.78 -0.8
593,166 + SM_b20807 0.78 -0.8
593,166 + SM_b20807 0.78 -2.2
593,360 + -0.8
593,457 + -0.4
593,484 + -0.6
593,484 + -2.1
593,497 - -0.3
593,498 + +0.1
593,703 + SM_b20808 0.27 +0.1
593,704 - SM_b20808 0.27 +0.2
593,772 + SM_b20808 0.36 -0.3
593,819 - -0.2
593,895 + SM_b20808 0.51 -0.4
593,895 + SM_b20808 0.51 +0.1
593,929 - SM_b20808 0.56 -0.1
593,941 + SM_b20808 0.57 -0.2
593,950 + SM_b20808 0.59 +0.7
593,950 + SM_b20808 0.59 -0.1
593,960 + SM_b20808 0.60 -0.3
593,960 + SM_b20808 0.60 +0.6
593,979 - SM_b20808 0.62 +0.2
593,979 - SM_b20808 0.62 +0.1
593,979 - SM_b20808 0.62 +0.1
593,979 - SM_b20808 0.62 +0.1
593,982 + SM_b20808 0.63 -0.2
593,982 + SM_b20808 0.63 -0.2
593,982 + SM_b20808 0.63 -0.1
593,982 + SM_b20808 0.63 +0.9
593,983 - SM_b20808 0.63 -0.4
593,983 - SM_b20808 0.63 -0.2
593,983 - SM_b20808 0.63 -0.3
593,983 - SM_b20808 0.63 +0.7
593,983 - SM_b20808 0.63 -0.9
594,160 + SM_b20808 0.86 +0.1
594,273 + -0.5
594,274 - -0.9
594,274 - +0.2
594,274 - -0.2
594,288 - -1.0
594,338 + -0.3
594,372 + +0.2
594,473 + -0.2
594,515 + +0.2
594,516 - -0.8

Or see this region's nucleotide sequence