Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006383

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
2,755,054	-				-0.5
2,755,316	-		ABIE53_006382	0.34	-2.5
2,755,538	+		ABIE53_006382	0.62	-1.0
2,755,538	+		ABIE53_006382	0.62	+1.0
2,755,538	+		ABIE53_006382	0.62	+1.0
2,755,538	+		ABIE53_006382	0.62	+1.0
2,755,539	-		ABIE53_006382	0.63	-0.0
2,755,740	-		ABIE53_006382	0.89	-3.1
2,755,742	+		ABIE53_006382	0.89	-0.6
2,755,742	+		ABIE53_006382	0.89	-1.4
2,755,742	+		ABIE53_006382	0.89	+0.2
2,755,743	-		ABIE53_006382	0.89	-0.0
2,755,744	+		ABIE53_006382	0.89	-0.6
2,755,744	+		ABIE53_006382	0.89	-0.2
2,755,744	+		ABIE53_006382	0.89	+0.2
2,755,745	-		ABIE53_006382	0.89	-0.4
2,755,745	-		ABIE53_006382	0.89	+1.2
2,755,796	+				-0.0
2,755,824	-				+1.0
2,755,956	+				+1.5
2,755,956	+				+1.0
2,755,957	-				-0.0
2,756,027	+				+0.2
2,756,298	+		ABIE53_006383	0.24	-2.6
2,756,342	+		ABIE53_006383	0.27	-1.4
2,756,441	-		ABIE53_006383	0.33	+0.4
2,756,469	-		ABIE53_006383	0.34	-0.6
2,756,526	+		ABIE53_006383	0.38	+3.0
2,756,631	+		ABIE53_006383	0.44	+1.0
2,756,631	+		ABIE53_006383	0.44	+0.6
2,756,632	-		ABIE53_006383	0.45	+1.0
2,756,821	-		ABIE53_006383	0.56	+1.0
2,756,821	-		ABIE53_006383	0.56	-1.6
2,756,947	+		ABIE53_006383	0.64	+2.0
2,756,947	+		ABIE53_006383	0.64	-0.6
2,756,947	+		ABIE53_006383	0.64	-1.9
2,757,027	+		ABIE53_006383	0.69	-1.8
2,757,046	+		ABIE53_006383	0.70	+3.3
2,757,047	-		ABIE53_006383	0.70	-2.4
2,757,127	-		ABIE53_006383	0.75	+3.0
2,757,201	+		ABIE53_006383	0.80	-2.8
2,757,203	+		ABIE53_006383	0.80	-2.4
2,757,204	-		ABIE53_006383	0.80	+2.0
2,757,204	-		ABIE53_006383	0.80	+1.5
2,757,204	-		ABIE53_006383	0.80	+0.5
2,757,204	-		ABIE53_006383	0.80	+2.0
2,757,204	-		ABIE53_006383	0.80	+0.2
2,757,298	+		ABIE53_006383	0.86	-0.0
2,757,299	-		ABIE53_006383	0.86	-0.0
2,757,340	+		ABIE53_006383	0.88	+2.0
2,757,340	+		ABIE53_006383	0.88	+1.5
2,757,341	-		ABIE53_006383	0.88	-0.6
2,757,341	-		ABIE53_006383	0.88	-1.4
2,757,480	+				+1.0
2,757,520	+				-1.4
2,757,533	+				+0.2
2,757,557	+				+1.0
2,757,625	-				+1.0
2,757,625	-				-0.6
2,757,845	+		ABIE53_006384	0.39	-0.6
2,757,846	-		ABIE53_006384	0.39	+0.4
2,757,892	+		ABIE53_006384	0.47	+1.5
2,757,903	+		ABIE53_006384	0.49	-0.6
2,757,904	-		ABIE53_006384	0.49	+3.3
2,757,904	-		ABIE53_006384	0.49	-0.3
2,758,047	+		ABIE53_006384	0.74	+1.0
2,758,048	-		ABIE53_006384	0.75	+0.2
2,758,048	-		ABIE53_006384	0.75	-1.0
2,758,049	+		ABIE53_006384	0.75	-1.0
2,758,205	-				-1.0
2,758,255	-				-0.0
2,758,323	+				+1.0
2,758,325	+				+2.0
2,758,326	-				+1.0
2,758,373	-				+1.0
2,758,379	+				-2.3
2,758,494	+		ABIE53_006385	0.10	+1.0
2,758,494	+		ABIE53_006385	0.10	+1.0
2,758,495	-		ABIE53_006385	0.10	+1.0
2,758,495	-		ABIE53_006385	0.10	+1.0
2,758,495	-		ABIE53_006385	0.10	-0.0
2,758,517	+		ABIE53_006385	0.13	+1.0
2,758,517	+		ABIE53_006385	0.13	-2.5
2,758,517	+		ABIE53_006385	0.13	+1.5
2,758,518	-		ABIE53_006385	0.13	+0.9
2,758,518	-		ABIE53_006385	0.13	-1.5
2,758,518	-		ABIE53_006385	0.13	-0.8
2,758,518	-		ABIE53_006385	0.13	-1.2