Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03410

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03400 and AO356_03405 are separated by 2 nucleotidesAO356_03405 and AO356_03410 overlap by 4 nucleotidesAO356_03410 and AO356_03415 are separated by 110 nucleotides AO356_03400: AO356_03400 - aminotransferase DegT, at 756,266 to 757,348 _03400 AO356_03405: AO356_03405 - serine acetyltransferase, at 757,351 to 757,926 _03405 AO356_03410: AO356_03410 - acetyltransferase, at 757,923 to 759,773 _03410 AO356_03415: AO356_03415 - oxidoreductase, at 759,884 to 760,834 _03415 Position (kb) 757 758 759 760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 756.988 kb on + strand, within AO356_03400at 757.021 kb on + strand, within AO356_03400at 757.021 kb on + strand, within AO356_03400at 757.023 kb on + strand, within AO356_03400at 757.024 kb on - strand, within AO356_03400at 757.048 kb on - strand, within AO356_03400at 757.094 kb on - strand, within AO356_03400at 757.094 kb on - strand, within AO356_03400at 757.096 kb on - strand, within AO356_03400at 757.096 kb on - strand, within AO356_03400at 757.113 kb on - strand, within AO356_03400at 757.113 kb on - strand, within AO356_03400at 757.113 kb on - strand, within AO356_03400at 757.114 kb on + strand, within AO356_03400at 757.187 kb on + strand, within AO356_03400at 757.187 kb on + strand, within AO356_03400at 757.188 kb on - strand, within AO356_03400at 757.188 kb on - strand, within AO356_03400at 757.258 kb on - strandat 757.309 kb on + strandat 757.309 kb on + strandat 757.310 kb on - strandat 757.310 kb on - strandat 757.310 kb on - strandat 757.505 kb on + strand, within AO356_03405at 757.505 kb on + strand, within AO356_03405at 757.553 kb on + strand, within AO356_03405at 757.553 kb on + strand, within AO356_03405at 757.631 kb on + strand, within AO356_03405at 757.632 kb on - strand, within AO356_03405at 757.632 kb on - strand, within AO356_03405at 757.667 kb on + strand, within AO356_03405at 757.668 kb on - strand, within AO356_03405at 757.668 kb on - strand, within AO356_03405at 757.702 kb on + strand, within AO356_03405at 757.755 kb on + strand, within AO356_03405at 757.916 kb on + strandat 757.916 kb on + strandat 757.917 kb on - strandat 757.917 kb on - strandat 757.919 kb on + strandat 757.919 kb on + strandat 757.920 kb on - strandat 757.920 kb on - strandat 757.943 kb on + strandat 757.943 kb on + strandat 757.944 kb on - strandat 757.944 kb on - strandat 757.944 kb on - strandat 757.987 kb on + strandat 757.988 kb on - strandat 757.988 kb on - strandat 757.988 kb on - strandat 757.988 kb on - strandat 758.010 kb on + strandat 758.010 kb on + strandat 758.010 kb on + strandat 758.011 kb on - strandat 758.011 kb on - strandat 758.038 kb on + strandat 758.038 kb on + strandat 758.060 kb on - strandat 758.241 kb on + strand, within AO356_03410at 758.242 kb on - strand, within AO356_03410at 758.261 kb on + strand, within AO356_03410at 758.261 kb on + strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.262 kb on - strand, within AO356_03410at 758.283 kb on - strand, within AO356_03410at 758.530 kb on + strand, within AO356_03410at 758.531 kb on - strand, within AO356_03410at 758.531 kb on - strand, within AO356_03410at 758.531 kb on - strand, within AO356_03410at 758.531 kb on - strand, within AO356_03410at 758.563 kb on - strand, within AO356_03410at 758.630 kb on + strand, within AO356_03410at 758.631 kb on - strand, within AO356_03410at 758.647 kb on + strand, within AO356_03410at 758.737 kb on - strand, within AO356_03410at 758.803 kb on + strand, within AO356_03410at 758.823 kb on + strand, within AO356_03410at 758.870 kb on - strand, within AO356_03410at 758.881 kb on + strand, within AO356_03410at 758.881 kb on + strand, within AO356_03410at 758.881 kb on + strand, within AO356_03410at 758.881 kb on + strand, within AO356_03410at 758.881 kb on + strand, within AO356_03410at 758.882 kb on - strand, within AO356_03410at 758.882 kb on - strand, within AO356_03410at 758.882 kb on - strand, within AO356_03410at 758.884 kb on + strand, within AO356_03410at 758.885 kb on - strand, within AO356_03410at 758.920 kb on + strand, within AO356_03410at 758.920 kb on + strand, within AO356_03410at 758.921 kb on - strand, within AO356_03410at 758.921 kb on - strand, within AO356_03410at 758.929 kb on + strand, within AO356_03410at 758.930 kb on - strand, within AO356_03410at 758.936 kb on + strand, within AO356_03410at 758.936 kb on + strand, within AO356_03410at 758.937 kb on - strand, within AO356_03410at 758.937 kb on - strand, within AO356_03410at 758.937 kb on - strand, within AO356_03410at 759.111 kb on + strand, within AO356_03410at 759.112 kb on - strand, within AO356_03410at 759.112 kb on - strand, within AO356_03410at 759.112 kb on - strand, within AO356_03410at 759.123 kb on + strand, within AO356_03410at 759.124 kb on - strand, within AO356_03410at 759.124 kb on - strand, within AO356_03410at 759.124 kb on - strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.208 kb on + strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.209 kb on - strand, within AO356_03410at 759.337 kb on + strand, within AO356_03410at 759.337 kb on + strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.338 kb on - strand, within AO356_03410at 759.368 kb on + strand, within AO356_03410at 759.369 kb on - strand, within AO356_03410at 759.406 kb on + strand, within AO356_03410at 759.407 kb on - strand, within AO356_03410at 759.407 kb on - strand, within AO356_03410at 759.407 kb on - strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.427 kb on + strand, within AO356_03410at 759.428 kb on - strand, within AO356_03410at 759.428 kb on - strand, within AO356_03410at 759.441 kb on - strand, within AO356_03410at 759.542 kb on - strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.574 kb on + strand, within AO356_03410at 759.575 kb on - strand, within AO356_03410at 759.575 kb on - strand, within AO356_03410at 759.624 kb on + strandat 759.624 kb on + strandat 759.625 kb on - strandat 759.667 kb on + strandat 759.667 kb on + strandat 759.690 kb on - strandat 759.700 kb on + strandat 759.701 kb on - strandat 759.701 kb on - strandat 759.803 kb on + strandat 760.026 kb on + strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.027 kb on - strand, within AO356_03415at 760.098 kb on + strand, within AO356_03415at 760.099 kb on - strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.163 kb on + strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.164 kb on - strand, within AO356_03415at 760.179 kb on + strand, within AO356_03415at 760.266 kb on + strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.267 kb on - strand, within AO356_03415at 760.292 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.354 kb on + strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.355 kb on - strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.359 kb on + strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.360 kb on - strand, within AO356_03415at 760.378 kb on - strand, within AO356_03415at 760.378 kb on - strand, within AO356_03415at 760.590 kb on + strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.591 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.615 kb on - strand, within AO356_03415at 760.740 kb on + strandat 760.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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756,988 + AO356_03400 0.67 +6.3
757,021 + AO356_03400 0.70 +6.2
757,021 + AO356_03400 0.70 +6.0
757,023 + AO356_03400 0.70 +6.9
757,024 - AO356_03400 0.70 +7.3
757,048 - AO356_03400 0.72 +6.8
757,094 - AO356_03400 0.76 +6.8
757,094 - AO356_03400 0.76 +8.0
757,096 - AO356_03400 0.77 +9.3
757,096 - AO356_03400 0.77 +7.9
757,113 - AO356_03400 0.78 +8.3
757,113 - AO356_03400 0.78 +6.6
757,113 - AO356_03400 0.78 +6.3
757,114 + AO356_03400 0.78 +8.0
757,187 + AO356_03400 0.85 +6.5
757,187 + AO356_03400 0.85 +8.3
757,188 - AO356_03400 0.85 +7.0
757,188 - AO356_03400 0.85 +7.0
757,258 - +8.6
757,309 + +6.6
757,309 + +6.8
757,310 - +5.3
757,310 - +7.1
757,310 - +7.4
757,505 + AO356_03405 0.27 +7.6
757,505 + AO356_03405 0.27 +7.3
757,553 + AO356_03405 0.35 +6.3
757,553 + AO356_03405 0.35 +8.9
757,631 + AO356_03405 0.49 +6.3
757,632 - AO356_03405 0.49 +8.0
757,632 - AO356_03405 0.49 +4.9
757,667 + AO356_03405 0.55 +5.8
757,668 - AO356_03405 0.55 +0.1
757,668 - AO356_03405 0.55 +6.3
757,702 + AO356_03405 0.61 +5.0
757,755 + AO356_03405 0.70 +7.1
757,916 + +5.6
757,916 + +7.8
757,917 - +6.2
757,917 - +6.4
757,919 + +5.4
757,919 + +5.6
757,920 - -0.6
757,920 - +6.8
757,943 + +6.1
757,943 + +5.7
757,944 - -0.6
757,944 - -2.0
757,944 - +0.9
757,987 + +4.3
757,988 - +0.8
757,988 - -0.3
757,988 - -2.3
757,988 - +0.2
758,010 + +2.2
758,010 + +2.8
758,010 + +4.3
758,011 - +1.2
758,011 - -0.7
758,038 + +2.0
758,038 + +1.8
758,060 - -0.6
758,241 + AO356_03410 0.17 +2.6
758,242 - AO356_03410 0.17 +0.9
758,261 + AO356_03410 0.18 +3.1
758,261 + AO356_03410 0.18 +4.3
758,262 - AO356_03410 0.18 +1.1
758,262 - AO356_03410 0.18 +0.6
758,262 - AO356_03410 0.18 -0.4
758,262 - AO356_03410 0.18 +1.0
758,283 - AO356_03410 0.19 +0.4
758,530 + AO356_03410 0.33 +3.3
758,531 - AO356_03410 0.33 +0.5
758,531 - AO356_03410 0.33 -3.8
758,531 - AO356_03410 0.33 -0.7
758,531 - AO356_03410 0.33 +0.3
758,563 - AO356_03410 0.35 +0.9
758,630 + AO356_03410 0.38 +2.3
758,631 - AO356_03410 0.38 +0.2
758,647 + AO356_03410 0.39 +2.2
758,737 - AO356_03410 0.44 +0.1
758,803 + AO356_03410 0.48 +2.8
758,823 + AO356_03410 0.49 +2.5
758,870 - AO356_03410 0.51 +0.5
758,881 + AO356_03410 0.52 -2.1
758,881 + AO356_03410 0.52 +2.4
758,881 + AO356_03410 0.52 -0.1
758,881 + AO356_03410 0.52 +2.2
758,881 + AO356_03410 0.52 +3.5
758,882 - AO356_03410 0.52 +0.7
758,882 - AO356_03410 0.52 +1.2
758,882 - AO356_03410 0.52 +0.7
758,884 + AO356_03410 0.52 +2.9
758,885 - AO356_03410 0.52 +1.9
758,920 + AO356_03410 0.54 +2.1
758,920 + AO356_03410 0.54 +0.5
758,921 - AO356_03410 0.54 -2.3
758,921 - AO356_03410 0.54 -1.8
758,929 + AO356_03410 0.54 +2.3
758,930 - AO356_03410 0.54 +0.1
758,936 + AO356_03410 0.55 +2.4
758,936 + AO356_03410 0.55 +2.8
758,937 - AO356_03410 0.55 +1.9
758,937 - AO356_03410 0.55 -1.7
758,937 - AO356_03410 0.55 -1.9
759,111 + AO356_03410 0.64 -0.8
759,112 - AO356_03410 0.64 +0.1
759,112 - AO356_03410 0.64 -2.9
759,112 - AO356_03410 0.64 -2.0
759,123 + AO356_03410 0.65 -0.1
759,124 - AO356_03410 0.65 +0.2
759,124 - AO356_03410 0.65 -0.3
759,124 - AO356_03410 0.65 +0.5
759,208 + AO356_03410 0.69 +0.2
759,208 + AO356_03410 0.69 +1.4
759,208 + AO356_03410 0.69 -0.9
759,208 + AO356_03410 0.69 +3.3
759,208 + AO356_03410 0.69 +0.7
759,208 + AO356_03410 0.69 +1.7
759,208 + AO356_03410 0.69 +1.9
759,209 - AO356_03410 0.69 +1.0
759,209 - AO356_03410 0.69 -0.4
759,209 - AO356_03410 0.69 -0.5
759,209 - AO356_03410 0.69 -0.1
759,337 + AO356_03410 0.76 +1.1
759,337 + AO356_03410 0.76 -0.4
759,338 - AO356_03410 0.76 -1.4
759,338 - AO356_03410 0.76 -0.6
759,338 - AO356_03410 0.76 -1.2
759,338 - AO356_03410 0.76 -0.6
759,338 - AO356_03410 0.76 +0.3
759,338 - AO356_03410 0.76 -0.7
759,338 - AO356_03410 0.76 -0.6
759,368 + AO356_03410 0.78 +2.6
759,369 - AO356_03410 0.78 +0.3
759,406 + AO356_03410 0.80 +1.7
759,407 - AO356_03410 0.80 -0.0
759,407 - AO356_03410 0.80 -3.4
759,407 - AO356_03410 0.80 -1.5
759,427 + AO356_03410 0.81 +0.7
759,427 + AO356_03410 0.81 -1.1
759,427 + AO356_03410 0.81 -0.7
759,427 + AO356_03410 0.81 +3.2
759,428 - AO356_03410 0.81 +1.1
759,428 - AO356_03410 0.81 -1.0
759,441 - AO356_03410 0.82 +1.3
759,542 - AO356_03410 0.87 -2.6
759,574 + AO356_03410 0.89 +0.5
759,574 + AO356_03410 0.89 +2.4
759,574 + AO356_03410 0.89 +1.7
759,574 + AO356_03410 0.89 -0.9
759,575 - AO356_03410 0.89 +0.9
759,575 - AO356_03410 0.89 +0.7
759,624 + -2.0
759,624 + -0.6
759,625 - -0.1
759,667 + +2.2
759,667 + +0.9
759,690 - +0.8
759,700 + -0.0
759,701 - -0.1
759,701 - +2.2
759,803 + +0.6
760,026 + AO356_03415 0.15 +6.6
760,027 - AO356_03415 0.15 +7.0
760,027 - AO356_03415 0.15 +6.9
760,027 - AO356_03415 0.15 +6.0
760,098 + AO356_03415 0.23 +6.3
760,099 - AO356_03415 0.23 +5.7
760,163 + AO356_03415 0.29 +7.2
760,163 + AO356_03415 0.29 +6.7
760,163 + AO356_03415 0.29 +8.3
760,164 - AO356_03415 0.29 +6.9
760,164 - AO356_03415 0.29 +6.4
760,164 - AO356_03415 0.29 +7.7
760,179 + AO356_03415 0.31 +7.0
760,266 + AO356_03415 0.40 +7.3
760,267 - AO356_03415 0.40 +7.6
760,267 - AO356_03415 0.40 +6.6
760,267 - AO356_03415 0.40 +8.7
760,292 + AO356_03415 0.43 +7.0
760,354 + AO356_03415 0.49 +7.9
760,354 + AO356_03415 0.49 +6.0
760,354 + AO356_03415 0.49 +6.6
760,354 + AO356_03415 0.49 +3.2
760,354 + AO356_03415 0.49 +8.5
760,354 + AO356_03415 0.49 +7.8
760,354 + AO356_03415 0.49 +8.6
760,355 - AO356_03415 0.50 +7.5
760,355 - AO356_03415 0.50 +7.4
760,355 - AO356_03415 0.50 +7.1
760,355 - AO356_03415 0.50 +6.1
760,359 + AO356_03415 0.50 +7.1
760,359 + AO356_03415 0.50 +6.7
760,359 + AO356_03415 0.50 +7.1
760,360 - AO356_03415 0.50 +7.1
760,360 - AO356_03415 0.50 +7.5
760,360 - AO356_03415 0.50 +10.4
760,360 - AO356_03415 0.50 +7.2
760,360 - AO356_03415 0.50 +7.1
760,360 - AO356_03415 0.50 +7.1
760,360 - AO356_03415 0.50 +6.7
760,378 - AO356_03415 0.52 +8.3
760,378 - AO356_03415 0.52 +6.5
760,590 + AO356_03415 0.74 +6.0
760,591 - AO356_03415 0.74 +8.1
760,591 - AO356_03415 0.74 +5.5
760,591 - AO356_03415 0.74 +6.7
760,591 - AO356_03415 0.74 +7.8
760,615 - AO356_03415 0.77 +6.5
760,615 - AO356_03415 0.77 +7.6
760,615 - AO356_03415 0.77 +7.6
760,740 + +9.8
760,757 - +7.9

Or see this region's nucleotide sequence