Experiment: KB with Sclareolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1070 and Psyr_1071 are separated by 115 nucleotides Psyr_1071 and Psyr_1072 are separated by 485 nucleotides
Psyr_1070: Psyr_1070 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 1,212,230 to 1,213,687
_1070
Psyr_1071: Psyr_1071 - Carboxylesterase, at 1,213,803 to 1,214,462
_1071
Psyr_1072: Psyr_1072 - amino acid ABC transporter substrate-binding protein, PAAT family, at 1,214,948 to 1,215,976
_1072
Position (kb) 1213
1214
1215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1212.809 kb on + strand, within Psyr_1070 at 1212.810 kb on - strand, within Psyr_1070 at 1212.810 kb on - strand, within Psyr_1070 at 1212.810 kb on - strand, within Psyr_1070 at 1212.887 kb on + strand, within Psyr_1070 at 1212.887 kb on + strand, within Psyr_1070 at 1212.887 kb on + strand, within Psyr_1070 at 1212.953 kb on - strand, within Psyr_1070 at 1213.098 kb on + strand, within Psyr_1070 at 1213.098 kb on + strand, within Psyr_1070 at 1213.098 kb on + strand, within Psyr_1070 at 1213.099 kb on - strand, within Psyr_1070 at 1213.099 kb on - strand, within Psyr_1070 at 1213.099 kb on - strand, within Psyr_1070 at 1213.185 kb on + strand, within Psyr_1070 at 1213.185 kb on + strand, within Psyr_1070 at 1213.186 kb on - strand, within Psyr_1070 at 1213.186 kb on - strand, within Psyr_1070 at 1213.186 kb on - strand, within Psyr_1070 at 1213.609 kb on + strand at 1213.610 kb on - strand at 1213.667 kb on - strand at 1213.711 kb on - strand at 1213.725 kb on - strand at 1213.725 kb on - strand at 1213.767 kb on + strand at 1213.767 kb on + strand at 1213.768 kb on - strand at 1213.896 kb on + strand, within Psyr_1071 at 1213.897 kb on - strand, within Psyr_1071 at 1214.030 kb on + strand, within Psyr_1071 at 1214.030 kb on + strand, within Psyr_1071 at 1214.031 kb on - strand, within Psyr_1071 at 1214.031 kb on - strand, within Psyr_1071 at 1214.031 kb on - strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.038 kb on + strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.039 kb on - strand, within Psyr_1071 at 1214.261 kb on - strand, within Psyr_1071 at 1214.272 kb on - strand, within Psyr_1071 at 1214.272 kb on - strand, within Psyr_1071 at 1214.323 kb on - strand, within Psyr_1071 at 1214.323 kb on - strand, within Psyr_1071 at 1214.323 kb on - strand, within Psyr_1071 at 1214.380 kb on + strand, within Psyr_1071 at 1214.381 kb on - strand, within Psyr_1071 at 1214.381 kb on - strand, within Psyr_1071 at 1214.411 kb on + strand at 1214.506 kb on + strand at 1214.506 kb on + strand at 1214.507 kb on - strand at 1214.551 kb on + strand at 1214.588 kb on - strand at 1214.588 kb on - strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.658 kb on + strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.659 kb on - strand at 1214.660 kb on + strand at 1214.660 kb on + strand at 1214.660 kb on + strand at 1214.660 kb on + strand at 1214.661 kb on - strand at 1214.661 kb on - strand at 1214.661 kb on - strand at 1214.661 kb on - strand at 1214.666 kb on + strand at 1214.666 kb on + strand at 1214.667 kb on - strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.669 kb on + strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.670 kb on - strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.673 kb on + strand at 1214.674 kb on - strand at 1214.674 kb on - strand at 1214.674 kb on - strand at 1214.674 kb on - strand at 1214.675 kb on + strand at 1214.736 kb on - strand at 1214.877 kb on + strand at 1214.878 kb on - strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.916 kb on + strand at 1214.917 kb on - strand at 1215.110 kb on - strand, within Psyr_1072 at 1215.166 kb on - strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.320 kb on + strand, within Psyr_1072 at 1215.323 kb on + strand, within Psyr_1072 at 1215.324 kb on - strand, within Psyr_1072 at 1215.324 kb on - strand, within Psyr_1072 at 1215.332 kb on - strand, within Psyr_1072 at 1215.346 kb on - strand, within Psyr_1072 at 1215.346 kb on - strand, within Psyr_1072 at 1215.441 kb on - strand, within Psyr_1072
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM remove 1,212,809 + Psyr_1070 0.40 +2.0 1,212,810 - Psyr_1070 0.40 -0.1 1,212,810 - Psyr_1070 0.40 -0.7 1,212,810 - Psyr_1070 0.40 +0.4 1,212,887 + Psyr_1070 0.45 -0.3 1,212,887 + Psyr_1070 0.45 +1.2 1,212,887 + Psyr_1070 0.45 -0.6 1,212,953 - Psyr_1070 0.50 -0.0 1,213,098 + Psyr_1070 0.60 -1.4 1,213,098 + Psyr_1070 0.60 -1.7 1,213,098 + Psyr_1070 0.60 -2.2 1,213,099 - Psyr_1070 0.60 -1.2 1,213,099 - Psyr_1070 0.60 -1.4 1,213,099 - Psyr_1070 0.60 +0.3 1,213,185 + Psyr_1070 0.66 +1.0 1,213,185 + Psyr_1070 0.66 -0.2 1,213,186 - Psyr_1070 0.66 -0.2 1,213,186 - Psyr_1070 0.66 -1.0 1,213,186 - Psyr_1070 0.66 -3.2 1,213,609 + -0.5 1,213,610 - -0.9 1,213,667 - +1.8 1,213,711 - +0.2 1,213,725 - +0.2 1,213,725 - -2.3 1,213,767 + +0.5 1,213,767 + -0.1 1,213,768 - +0.0 1,213,896 + Psyr_1071 0.14 -0.7 1,213,897 - Psyr_1071 0.14 +0.2 1,214,030 + Psyr_1071 0.34 -1.5 1,214,030 + Psyr_1071 0.34 -2.2 1,214,031 - Psyr_1071 0.35 -0.5 1,214,031 - Psyr_1071 0.35 -2.3 1,214,031 - Psyr_1071 0.35 -3.4 1,214,038 + Psyr_1071 0.36 -1.4 1,214,038 + Psyr_1071 0.36 +0.4 1,214,038 + Psyr_1071 0.36 -1.0 1,214,038 + Psyr_1071 0.36 -1.0 1,214,039 - Psyr_1071 0.36 -0.0 1,214,039 - Psyr_1071 0.36 -1.3 1,214,039 - Psyr_1071 0.36 -0.9 1,214,039 - Psyr_1071 0.36 +1.1 1,214,039 - Psyr_1071 0.36 +1.6 1,214,039 - Psyr_1071 0.36 -0.8 1,214,261 - Psyr_1071 0.69 -0.2 1,214,272 - Psyr_1071 0.71 -0.0 1,214,272 - Psyr_1071 0.71 -1.2 1,214,323 - Psyr_1071 0.79 +0.0 1,214,323 - Psyr_1071 0.79 -0.1 1,214,323 - Psyr_1071 0.79 +0.0 1,214,380 + Psyr_1071 0.87 -1.3 1,214,381 - Psyr_1071 0.88 +0.4 1,214,381 - Psyr_1071 0.88 -1.5 1,214,411 + +0.0 1,214,506 + -2.7 1,214,506 + +0.3 1,214,507 - +0.1 1,214,551 + -0.1 1,214,588 - +0.0 1,214,588 - +0.7 1,214,658 + +1.8 1,214,658 + +0.8 1,214,658 + +0.6 1,214,658 + -1.9 1,214,658 + +1.7 1,214,658 + +0.1 1,214,658 + -0.7 1,214,658 + -0.0 1,214,658 + +0.7 1,214,658 + -1.0 1,214,659 - -0.7 1,214,659 - +0.3 1,214,659 - +0.1 1,214,659 - +0.5 1,214,659 - -1.8 1,214,659 - +0.9 1,214,659 - -1.0 1,214,659 - -0.5 1,214,659 - -1.2 1,214,660 + -0.7 1,214,660 + -1.2 1,214,660 + -0.7 1,214,660 + -0.2 1,214,661 - -0.1 1,214,661 - +0.1 1,214,661 - +0.5 1,214,661 - -0.2 1,214,666 + +0.1 1,214,666 + -0.2 1,214,667 - -0.8 1,214,669 + -0.3 1,214,669 + -0.6 1,214,669 + -0.9 1,214,669 + +1.0 1,214,669 + -0.0 1,214,669 + -0.5 1,214,669 + -0.1 1,214,669 + +0.7 1,214,670 - -0.0 1,214,670 - -0.8 1,214,670 - -1.6 1,214,670 - +2.5 1,214,670 - -0.0 1,214,670 - -1.0 1,214,670 - +0.0 1,214,670 - +3.3 1,214,673 + +0.2 1,214,673 + -1.9 1,214,673 + +1.0 1,214,673 + -0.4 1,214,673 + -0.6 1,214,673 + -1.4 1,214,673 + -1.4 1,214,673 + -0.0 1,214,674 - +2.5 1,214,674 - -1.0 1,214,674 - -0.4 1,214,674 - +0.7 1,214,675 + -0.6 1,214,736 - -0.2 1,214,877 + +0.5 1,214,878 - -0.2 1,214,916 + +1.0 1,214,916 + -1.4 1,214,916 + -0.4 1,214,916 + +0.5 1,214,916 + +0.6 1,214,917 - -0.3 1,215,110 - Psyr_1072 0.16 +2.5 1,215,166 - Psyr_1072 0.21 +0.7 1,215,320 + Psyr_1072 0.36 +0.2 1,215,320 + Psyr_1072 0.36 -0.0 1,215,320 + Psyr_1072 0.36 -1.6 1,215,320 + Psyr_1072 0.36 +2.1 1,215,320 + Psyr_1072 0.36 +0.8 1,215,320 + Psyr_1072 0.36 -1.2 1,215,323 + Psyr_1072 0.36 -0.6 1,215,324 - Psyr_1072 0.37 +0.4 1,215,324 - Psyr_1072 0.37 -0.5 1,215,332 - Psyr_1072 0.37 -0.4 1,215,346 - Psyr_1072 0.39 -0.3 1,215,346 - Psyr_1072 0.39 -0.4 1,215,441 - Psyr_1072 0.48 -1.4
Or see this region's nucleotide sequence