Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1326

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1324 and Psyr_1325 are separated by 96 nucleotidesPsyr_1325 and Psyr_1326 are separated by 71 nucleotidesPsyr_1326 and Psyr_1327 are separated by 204 nucleotidesPsyr_1327 and Psyr_1328 are separated by 113 nucleotides Psyr_1324: Psyr_1324 - conserved hypothetical protein, at 1,501,766 to 1,502,389 _1324 Psyr_1325: Psyr_1325 - Protein of unknown function DUF548, at 1,502,486 to 1,503,295 _1325 Psyr_1326: Psyr_1326 - conserved hypothetical protein, at 1,503,367 to 1,504,056 _1326 Psyr_1327: Psyr_1327 - conserved hypothetical protein, at 1,504,261 to 1,504,611 _1327 Psyr_1328: Psyr_1328 - glycerol-3-phosphate acyltransferase, at 1,504,725 to 1,507,226 _1328 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -1 0 1 2 3at 1502.389 kb on + strandat 1502.389 kb on + strandat 1502.389 kb on + strandat 1502.390 kb on - strandat 1502.390 kb on - strandat 1502.399 kb on + strandat 1502.400 kb on - strandat 1502.429 kb on + strandat 1502.460 kb on + strandat 1502.479 kb on - strandat 1503.015 kb on - strand, within Psyr_1325at 1503.015 kb on - strand, within Psyr_1325at 1503.488 kb on + strand, within Psyr_1326at 1503.488 kb on + strand, within Psyr_1326at 1503.557 kb on + strand, within Psyr_1326at 1503.557 kb on + strand, within Psyr_1326at 1503.558 kb on - strand, within Psyr_1326at 1503.558 kb on - strand, within Psyr_1326at 1503.558 kb on - strand, within Psyr_1326at 1503.558 kb on - strand, within Psyr_1326at 1503.558 kb on - strand, within Psyr_1326at 1503.721 kb on + strand, within Psyr_1326at 1503.721 kb on + strand, within Psyr_1326at 1503.721 kb on + strand, within Psyr_1326at 1503.721 kb on + strand, within Psyr_1326at 1503.722 kb on - strand, within Psyr_1326at 1503.722 kb on - strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1504.128 kb on - strandat 1504.350 kb on + strand, within Psyr_1327at 1504.351 kb on - strand, within Psyr_1327at 1504.351 kb on - strand, within Psyr_1327at 1504.356 kb on + strand, within Psyr_1327at 1504.356 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.389 kb on - strand, within Psyr_1327at 1504.389 kb on - strand, within Psyr_1327at 1504.389 kb on - strand, within Psyr_1327at 1504.458 kb on + strand, within Psyr_1327at 1504.458 kb on + strand, within Psyr_1327at 1504.459 kb on - strand, within Psyr_1327at 1504.568 kb on + strand, within Psyr_1327at 1504.571 kb on + strand, within Psyr_1327at 1504.571 kb on + strand, within Psyr_1327at 1504.571 kb on + strand, within Psyr_1327at 1504.571 kb on + strand, within Psyr_1327at 1504.571 kb on + strand, within Psyr_1327at 1504.592 kb on - strandat 1504.595 kb on - strandat 1504.623 kb on + strandat 1504.663 kb on + strandat 1504.663 kb on + strandat 1504.663 kb on + strandat 1504.663 kb on + strandat 1504.663 kb on + strandat 1504.682 kb on + strandat 1504.683 kb on - strandat 1504.683 kb on - strandat 1504.727 kb on - strandat 1504.864 kb on + strandat 1504.864 kb on + strandat 1504.864 kb on + strandat 1504.864 kb on + strandat 1504.896 kb on + strandat 1504.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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1,502,389 + -0.6
1,502,389 + -1.4
1,502,389 + -1.7
1,502,390 - -0.3
1,502,390 - +0.3
1,502,399 + -0.7
1,502,400 - -1.0
1,502,429 + +0.3
1,502,460 + -0.1
1,502,479 - -0.5
1,503,015 - Psyr_1325 0.65 +0.4
1,503,015 - Psyr_1325 0.65 -0.8
1,503,488 + Psyr_1326 0.18 +0.6
1,503,488 + Psyr_1326 0.18 +0.4
1,503,557 + Psyr_1326 0.28 +0.4
1,503,557 + Psyr_1326 0.28 +0.0
1,503,558 - Psyr_1326 0.28 +0.5
1,503,558 - Psyr_1326 0.28 +1.5
1,503,558 - Psyr_1326 0.28 -0.1
1,503,558 - Psyr_1326 0.28 -0.1
1,503,558 - Psyr_1326 0.28 +0.3
1,503,721 + Psyr_1326 0.51 +1.1
1,503,721 + Psyr_1326 0.51 +2.9
1,503,721 + Psyr_1326 0.51 +0.1
1,503,721 + Psyr_1326 0.51 +0.7
1,503,722 - Psyr_1326 0.51 -0.5
1,503,722 - Psyr_1326 0.51 +1.6
1,503,862 + Psyr_1326 0.72 -1.4
1,503,862 + Psyr_1326 0.72 -1.4
1,503,862 + Psyr_1326 0.72 -0.7
1,503,862 + Psyr_1326 0.72 -0.0
1,503,862 + Psyr_1326 0.72 +0.6
1,503,862 + Psyr_1326 0.72 +1.1
1,503,862 + Psyr_1326 0.72 +0.0
1,503,862 + Psyr_1326 0.72 +0.7
1,503,863 - Psyr_1326 0.72 +0.6
1,503,863 - Psyr_1326 0.72 +0.4
1,503,863 - Psyr_1326 0.72 -0.2
1,503,863 - Psyr_1326 0.72 +0.3
1,503,863 - Psyr_1326 0.72 -0.1
1,503,863 - Psyr_1326 0.72 +0.6
1,503,863 - Psyr_1326 0.72 -0.2
1,503,863 - Psyr_1326 0.72 -0.9
1,503,863 - Psyr_1326 0.72 +1.6
1,503,863 - Psyr_1326 0.72 +0.2
1,503,863 - Psyr_1326 0.72 -0.3
1,504,128 - +1.4
1,504,350 + Psyr_1327 0.25 -0.9
1,504,351 - Psyr_1327 0.26 -1.3
1,504,351 - Psyr_1327 0.26 -0.4
1,504,356 + Psyr_1327 0.27 -0.2
1,504,356 + Psyr_1327 0.27 -1.7
1,504,388 + Psyr_1327 0.36 +0.0
1,504,388 + Psyr_1327 0.36 +2.9
1,504,388 + Psyr_1327 0.36 +1.3
1,504,388 + Psyr_1327 0.36 -1.0
1,504,388 + Psyr_1327 0.36 -0.2
1,504,388 + Psyr_1327 0.36 +0.4
1,504,389 - Psyr_1327 0.36 +3.6
1,504,389 - Psyr_1327 0.36 -1.2
1,504,389 - Psyr_1327 0.36 +0.0
1,504,458 + Psyr_1327 0.56 +1.3
1,504,458 + Psyr_1327 0.56 -1.2
1,504,459 - Psyr_1327 0.56 +1.2
1,504,568 + Psyr_1327 0.87 -0.7
1,504,571 + Psyr_1327 0.88 -0.6
1,504,571 + Psyr_1327 0.88 -1.3
1,504,571 + Psyr_1327 0.88 +0.0
1,504,571 + Psyr_1327 0.88 -0.7
1,504,571 + Psyr_1327 0.88 -0.3
1,504,592 - +0.3
1,504,595 - +0.6
1,504,623 + +0.5
1,504,663 + -0.2
1,504,663 + +1.3
1,504,663 + +2.9
1,504,663 + -0.5
1,504,663 + +0.0
1,504,682 + +0.3
1,504,683 - +1.0
1,504,683 - -1.4
1,504,727 - +1.0
1,504,864 + -0.6
1,504,864 + +0.3
1,504,864 + +0.3
1,504,864 + -0.6
1,504,896 + +1.6
1,504,896 + +0.0

Or see this region's nucleotide sequence