Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05825

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05824 and H281DRAFT_05825 are separated by 129 nucleotidesH281DRAFT_05825 and H281DRAFT_05826 are separated by 61 nucleotides H281DRAFT_05824: H281DRAFT_05824 - tRNA s(2)C-32 sulfurtransferase, at 99,936 to 100,910 _05824 H281DRAFT_05825: H281DRAFT_05825 - UDP-N-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate N-acetyltransferase, at 101,040 to 102,401 _05825 H281DRAFT_05826: H281DRAFT_05826 - glutamine--fructose-6-phosphate transaminase, at 102,463 to 104,280 _05826 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2at 100.140 kb on + strandat 100.140 kb on + strand, within H281DRAFT_05824at 100.140 kb on + strand, within H281DRAFT_05824at 100.141 kb on - strand, within H281DRAFT_05824at 100.141 kb on - strand, within H281DRAFT_05824at 100.305 kb on + strand, within H281DRAFT_05824at 100.305 kb on + strand, within H281DRAFT_05824at 100.305 kb on + strand, within H281DRAFT_05824at 100.305 kb on + strandat 100.306 kb on - strand, within H281DRAFT_05824at 100.403 kb on - strand, within H281DRAFT_05824at 100.403 kb on - strand, within H281DRAFT_05824at 100.474 kb on - strand, within H281DRAFT_05824at 100.551 kb on + strand, within H281DRAFT_05824at 100.552 kb on - strand, within H281DRAFT_05824at 100.552 kb on - strand, within H281DRAFT_05824at 100.578 kb on + strand, within H281DRAFT_05824at 100.579 kb on - strand, within H281DRAFT_05824at 100.707 kb on - strand, within H281DRAFT_05824at 100.707 kb on - strand, within H281DRAFT_05824at 100.707 kb on - strand, within H281DRAFT_05824at 100.712 kb on + strand, within H281DRAFT_05824at 100.712 kb on + strand, within H281DRAFT_05824at 101.000 kb on + strandat 101.001 kb on - strandat 101.026 kb on + strandat 101.026 kb on + strandat 101.028 kb on + strandat 102.376 kb on + strandat 102.376 kb on + strandat 102.376 kb on + strandat 102.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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100,140 + +2.0
100,140 + H281DRAFT_05824 0.21 +1.4
100,140 + H281DRAFT_05824 0.21 +1.0
100,141 - H281DRAFT_05824 0.21 +2.0
100,141 - H281DRAFT_05824 0.21 +1.2
100,305 + H281DRAFT_05824 0.38 +0.3
100,305 + H281DRAFT_05824 0.38 -0.7
100,305 + H281DRAFT_05824 0.38 +0.5
100,305 + +2.0
100,306 - H281DRAFT_05824 0.38 +0.7
100,403 - H281DRAFT_05824 0.48 -0.8
100,403 - H281DRAFT_05824 0.48 -2.2
100,474 - H281DRAFT_05824 0.55 +0.3
100,551 + H281DRAFT_05824 0.63 -0.3
100,552 - H281DRAFT_05824 0.63 +0.9
100,552 - H281DRAFT_05824 0.63 +0.2
100,578 + H281DRAFT_05824 0.66 -0.5
100,579 - H281DRAFT_05824 0.66 +0.3
100,707 - H281DRAFT_05824 0.79 +0.9
100,707 - H281DRAFT_05824 0.79 +0.7
100,707 - H281DRAFT_05824 0.79 -0.8
100,712 + H281DRAFT_05824 0.80 -0.5
100,712 + H281DRAFT_05824 0.80 +2.0
101,000 + -0.3
101,001 - -0.0
101,026 + -0.2
101,026 + +0.7
101,028 + +1.2
102,376 + -0.0
102,376 + -0.9
102,376 + -0.4
102,386 + -0.1

Or see this region's nucleotide sequence