Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02988

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02987 and H281DRAFT_02988 are separated by 120 nucleotidesH281DRAFT_02988 and H281DRAFT_02989 are separated by 38 nucleotides H281DRAFT_02987: H281DRAFT_02987 - hypothetical protein, at 7,992 to 8,951 _02987 H281DRAFT_02988: H281DRAFT_02988 - NADPH:quinone reductase, at 9,072 to 10,079 _02988 H281DRAFT_02989: H281DRAFT_02989 - ABC-type multidrug transport system, ATPase component, at 10,118 to 10,741 _02989 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 8.421 kb on + strand, within H281DRAFT_02987at 8.438 kb on + strand, within H281DRAFT_02987at 8.643 kb on + strand, within H281DRAFT_02987at 8.817 kb on + strand, within H281DRAFT_02987at 8.817 kb on + strand, within H281DRAFT_02987at 9.173 kb on + strand, within H281DRAFT_02988at 9.173 kb on + strand, within H281DRAFT_02988at 9.205 kb on - strand, within H281DRAFT_02988at 9.214 kb on + strand, within H281DRAFT_02988at 9.246 kb on - strand, within H281DRAFT_02988at 9.446 kb on + strand, within H281DRAFT_02988at 9.446 kb on + strand, within H281DRAFT_02988at 9.447 kb on - strand, within H281DRAFT_02988at 9.465 kb on + strand, within H281DRAFT_02988at 9.699 kb on + strand, within H281DRAFT_02988at 9.700 kb on - strand, within H281DRAFT_02988at 10.188 kb on + strand, within H281DRAFT_02989at 10.189 kb on - strand, within H281DRAFT_02989at 10.465 kb on - strand, within H281DRAFT_02989at 10.512 kb on + strand, within H281DRAFT_02989at 10.512 kb on + strand, within H281DRAFT_02989at 10.512 kb on + strand, within H281DRAFT_02989at 10.537 kb on + strand, within H281DRAFT_02989at 10.538 kb on - strand, within H281DRAFT_02989at 10.627 kb on + strand, within H281DRAFT_02989at 10.938 kb on + strandat 10.951 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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8,421 + H281DRAFT_02987 0.45 +0.2
8,438 + H281DRAFT_02987 0.46 -1.1
8,643 + H281DRAFT_02987 0.68 -0.4
8,817 + H281DRAFT_02987 0.86 -1.5
8,817 + H281DRAFT_02987 0.86 +1.2
9,173 + H281DRAFT_02988 0.10 +0.8
9,173 + H281DRAFT_02988 0.10 +2.0
9,205 - H281DRAFT_02988 0.13 -1.0
9,214 + H281DRAFT_02988 0.14 -0.6
9,246 - H281DRAFT_02988 0.17 +0.0
9,446 + H281DRAFT_02988 0.37 +0.9
9,446 + H281DRAFT_02988 0.37 +1.0
9,447 - H281DRAFT_02988 0.37 -1.5
9,465 + H281DRAFT_02988 0.39 -0.6
9,699 + H281DRAFT_02988 0.62 -1.5
9,700 - H281DRAFT_02988 0.62 +2.0
10,188 + H281DRAFT_02989 0.11 +0.3
10,189 - H281DRAFT_02989 0.11 -0.4
10,465 - H281DRAFT_02989 0.56 +0.5
10,512 + H281DRAFT_02989 0.63 +0.0
10,512 + H281DRAFT_02989 0.63 +1.0
10,512 + H281DRAFT_02989 0.63 -0.5
10,537 + H281DRAFT_02989 0.67 -0.2
10,538 - H281DRAFT_02989 0.67 -0.4
10,627 + H281DRAFT_02989 0.82 +0.3
10,938 + +0.7
10,951 + -2.3

Or see this region's nucleotide sequence