Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0833 and Synpcc7942_0834 are separated by 399 nucleotides Synpcc7942_0834 and ruvB are separated by 425 nucleotides
Synpcc7942_0833: Synpcc7942_0833 - hypothetical protein, at 827,112 to 828,182
_0833
Synpcc7942_0834: Synpcc7942_0834 - hypothetical protein, at 828,582 to 829,235
_0834
Synpcc7942_0835: ruvB - Holliday junction DNA helicase B, at 829,661 to 830,788
ruvB
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 827.588 kb on - strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.627 kb on + strand, within Synpcc7942_0833 at 827.628 kb on + strand, within Synpcc7942_0833 at 827.629 kb on + strand, within Synpcc7942_0833 at 827.636 kb on - strand, within Synpcc7942_0833 at 827.666 kb on + strand, within Synpcc7942_0833 at 827.688 kb on - strand, within Synpcc7942_0833 at 827.857 kb on - strand, within Synpcc7942_0833 at 827.866 kb on + strand, within Synpcc7942_0833 at 827.904 kb on - strand, within Synpcc7942_0833 at 827.961 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.047 kb on + strand, within Synpcc7942_0833 at 828.111 kb on + strand at 828.144 kb on - strand at 828.160 kb on + strand at 828.168 kb on - strand at 828.185 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.193 kb on + strand at 828.195 kb on + strand at 828.195 kb on + strand at 828.201 kb on - strand at 828.203 kb on - strand at 828.203 kb on - strand at 828.214 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.219 kb on + strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.227 kb on - strand at 828.275 kb on + strand at 828.288 kb on - strand at 828.343 kb on - strand at 828.345 kb on + strand at 828.356 kb on - strand at 828.368 kb on - strand at 828.374 kb on - strand at 828.472 kb on - strand at 828.472 kb on - strand at 828.473 kb on - strand at 828.475 kb on + strand at 828.499 kb on - strand at 828.532 kb on - strand at 828.532 kb on - strand at 828.564 kb on + strand at 828.570 kb on - strand at 828.572 kb on - strand at 828.593 kb on + strand at 828.664 kb on + strand, within Synpcc7942_0834 at 828.670 kb on - strand, within Synpcc7942_0834 at 828.682 kb on - strand, within Synpcc7942_0834 at 828.719 kb on + strand, within Synpcc7942_0834 at 828.727 kb on - strand, within Synpcc7942_0834 at 828.741 kb on + strand, within Synpcc7942_0834 at 828.748 kb on + strand, within Synpcc7942_0834 at 828.749 kb on - strand, within Synpcc7942_0834 at 828.761 kb on - strand, within Synpcc7942_0834 at 828.769 kb on + strand, within Synpcc7942_0834 at 828.775 kb on + strand, within Synpcc7942_0834 at 828.783 kb on - strand, within Synpcc7942_0834 at 828.795 kb on - strand, within Synpcc7942_0834 at 828.824 kb on + strand, within Synpcc7942_0834 at 828.833 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.896 kb on + strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.904 kb on - strand, within Synpcc7942_0834 at 828.928 kb on + strand, within Synpcc7942_0834 at 828.931 kb on + strand, within Synpcc7942_0834 at 828.936 kb on + strand, within Synpcc7942_0834 at 828.949 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.977 kb on - strand, within Synpcc7942_0834 at 828.985 kb on - strand, within Synpcc7942_0834 at 829.015 kb on - strand, within Synpcc7942_0834 at 829.025 kb on + strand, within Synpcc7942_0834 at 829.031 kb on - strand, within Synpcc7942_0834 at 829.158 kb on + strand, within Synpcc7942_0834 at 829.168 kb on - strand, within Synpcc7942_0834 at 829.197 kb on + strand at 829.197 kb on + strand at 829.207 kb on + strand at 829.207 kb on + strand at 829.208 kb on + strand at 829.215 kb on - strand at 829.284 kb on - strand at 829.354 kb on + strand at 829.354 kb on + strand at 829.375 kb on + strand at 829.383 kb on - strand at 829.398 kb on - strand at 829.428 kb on + strand at 829.433 kb on + strand at 829.434 kb on - strand at 829.434 kb on - strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.450 kb on + strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.458 kb on - strand at 829.460 kb on + strand at 829.466 kb on + strand at 829.472 kb on - strand at 829.484 kb on + strand at 829.487 kb on - strand at 829.570 kb on - strand at 829.598 kb on + strand at 829.603 kb on + strand at 829.611 kb on + strand at 829.619 kb on - strand at 829.628 kb on + strand at 829.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 827,588 - Synpcc7942_0833 0.44 +1.0 827,627 + Synpcc7942_0833 0.48 +1.0 827,627 + Synpcc7942_0833 0.48 +1.0 827,628 + Synpcc7942_0833 0.48 +1.0 827,629 + Synpcc7942_0833 0.48 +1.0 827,636 - Synpcc7942_0833 0.49 +0.0 827,666 + Synpcc7942_0833 0.52 +1.0 827,688 - Synpcc7942_0833 0.54 -1.3 827,857 - Synpcc7942_0833 0.70 +1.0 827,866 + Synpcc7942_0833 0.70 +1.0 827,904 - Synpcc7942_0833 0.74 -0.6 827,961 + Synpcc7942_0833 0.79 +1.0 828,047 + Synpcc7942_0833 0.87 +1.0 828,047 + Synpcc7942_0833 0.87 +0.0 828,111 + -0.3 828,144 - +0.0 828,160 + -1.2 828,168 - -1.0 828,185 + -1.6 828,193 + +0.0 828,193 + -0.8 828,193 + +0.7 828,193 + +1.0 828,195 + -0.8 828,195 + -0.6 828,201 - -1.2 828,203 - +0.0 828,203 - -1.0 828,214 + -1.0 828,219 + +1.5 828,219 + +3.0 828,219 + -0.9 828,219 + -0.0 828,219 + -0.1 828,219 + -0.5 828,219 + -1.9 828,227 - +0.4 828,227 - +1.0 828,227 - -0.3 828,227 - -2.8 828,227 - +1.0 828,275 + -1.1 828,288 - -2.6 828,343 - +0.0 828,345 + +1.7 828,356 - +0.3 828,368 - +0.3 828,374 - -1.2 828,472 - +0.0 828,472 - +1.4 828,473 - +1.7 828,475 + +1.2 828,499 - -0.2 828,532 - +0.6 828,532 - -0.5 828,564 + -0.6 828,570 - +0.3 828,572 - -1.1 828,593 + -1.5 828,664 + Synpcc7942_0834 0.13 -2.0 828,670 - Synpcc7942_0834 0.13 +2.3 828,682 - Synpcc7942_0834 0.15 -1.2 828,719 + Synpcc7942_0834 0.21 -1.0 828,727 - Synpcc7942_0834 0.22 +0.4 828,741 + Synpcc7942_0834 0.24 -0.5 828,748 + Synpcc7942_0834 0.25 +1.0 828,749 - Synpcc7942_0834 0.26 -0.9 828,761 - Synpcc7942_0834 0.27 -1.2 828,769 + Synpcc7942_0834 0.29 -1.2 828,775 + Synpcc7942_0834 0.30 -1.3 828,783 - Synpcc7942_0834 0.31 -1.5 828,795 - Synpcc7942_0834 0.33 -2.7 828,824 + Synpcc7942_0834 0.37 -0.7 828,833 + Synpcc7942_0834 0.38 -1.0 828,896 + Synpcc7942_0834 0.48 -0.3 828,896 + Synpcc7942_0834 0.48 +0.1 828,904 - Synpcc7942_0834 0.49 +0.0 828,904 - Synpcc7942_0834 0.49 -1.8 828,904 - Synpcc7942_0834 0.49 -1.4 828,928 + Synpcc7942_0834 0.53 -0.9 828,931 + Synpcc7942_0834 0.53 -0.9 828,936 + Synpcc7942_0834 0.54 +0.3 828,949 - Synpcc7942_0834 0.56 -0.9 828,977 - Synpcc7942_0834 0.60 -1.3 828,977 - Synpcc7942_0834 0.60 -1.6 828,985 - Synpcc7942_0834 0.62 -2.2 829,015 - Synpcc7942_0834 0.66 -0.3 829,025 + Synpcc7942_0834 0.68 +1.0 829,031 - Synpcc7942_0834 0.69 -0.3 829,158 + Synpcc7942_0834 0.88 +2.0 829,168 - Synpcc7942_0834 0.90 -0.6 829,197 + -0.9 829,197 + +0.4 829,207 + -0.3 829,207 + +0.3 829,208 + -1.4 829,215 - -1.7 829,284 - +1.0 829,354 + -1.9 829,354 + +0.3 829,375 + +0.4 829,383 - -0.8 829,398 - -0.7 829,428 + -0.2 829,433 + -1.0 829,434 - -1.5 829,434 - -0.9 829,450 + +1.0 829,450 + -1.3 829,450 + -1.1 829,450 + +1.0 829,450 + +1.0 829,450 + -0.1 829,450 + -0.4 829,450 + -0.7 829,458 - -0.5 829,458 - +0.0 829,458 - -0.5 829,458 - +0.7 829,458 - -0.7 829,458 - -2.2 829,458 - +1.0 829,458 - +0.0 829,458 - -0.4 829,458 - -0.8 829,458 - -1.0 829,458 - -0.8 829,458 - +0.2 829,458 - +2.0 829,458 - +0.4 829,458 - -0.9 829,460 + -0.8 829,466 + -1.4 829,472 - -0.7 829,484 + -1.3 829,487 - -1.0 829,570 - -0.1 829,598 + +1.0 829,603 + +1.0 829,611 + +0.6 829,619 - +1.0 829,628 + +0.0 829,634 - +0.4
Or see this region's nucleotide sequence