Strain Fitness in Escherichia coli BW25113 around b3197

Experiment: LB Anaerobic with Doxycycline hyclate 0.000000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with Doxycycline hyclate 0.000000390625 mM
3,338,300	-				-0.0
3,338,357	-				+0.7
3,338,357	-				-0.5
3,338,436	-	yrbG	b3196	0.14	+0.2
3,338,436	-	yrbG	b3196	0.14	-0.7
3,338,436	-	yrbG	b3196	0.14	+0.0
3,338,436	-	yrbG	b3196	0.14	-0.1
3,338,462	+	yrbG	b3196	0.17	-1.3
3,338,503	+	yrbG	b3196	0.21	-1.5
3,338,508	+	yrbG	b3196	0.22	+0.4
3,338,508	+	yrbG	b3196	0.22	+0.3
3,338,553	+	yrbG	b3196	0.26	+0.2
3,338,591	+	yrbG	b3196	0.30	-0.7
3,338,594	+	yrbG	b3196	0.30	-0.3
3,338,601	+	yrbG	b3196	0.31	-0.5
3,338,612	+	yrbG	b3196	0.32	+0.5
3,338,612	+	yrbG	b3196	0.32	-1.8
3,338,626	+	yrbG	b3196	0.34	-0.6
3,338,629	-	yrbG	b3196	0.34	+0.2
3,338,629	-	yrbG	b3196	0.34	+1.7
3,338,643	+	yrbG	b3196	0.35	-0.1
3,338,646	-	yrbG	b3196	0.36	+0.4
3,338,651	-	yrbG	b3196	0.36	-0.1
3,338,693	-				-1.1
3,338,714	-	yrbG	b3196	0.43	+0.7
3,338,714	-	yrbG	b3196	0.43	+0.6
3,338,714	-	yrbG	b3196	0.43	+0.7
3,338,722	-	yrbG	b3196	0.43	-1.0
3,338,768	-	yrbG	b3196	0.48	-1.1
3,338,789	+	yrbG	b3196	0.50	-0.3
3,338,792	-	yrbG	b3196	0.51	+0.2
3,338,797	-	yrbG	b3196	0.51	+0.6
3,338,797	-	yrbG	b3196	0.51	+0.4
3,338,876	+	yrbG	b3196	0.59	+0.1
3,338,891	+	yrbG	b3196	0.61	+0.9
3,338,897	+	yrbG	b3196	0.61	-0.8
3,338,960	-	yrbG	b3196	0.68	+0.6
3,338,984	-	yrbG	b3196	0.70	-0.8
3,339,031	-	yrbG	b3196	0.75	+0.2
3,339,092	-	yrbG	b3196	0.81	+1.1
3,339,092	-	yrbG	b3196	0.81	+0.7
3,339,107	+	yrbG	b3196	0.83	-0.9
3,339,107	+	yrbG	b3196	0.83	-0.6
3,339,115	-	yrbG	b3196	0.84	-0.7
3,339,122	-	yrbG	b3196	0.84	-0.8
3,339,122	-	yrbG	b3196	0.84	+0.1
3,339,209	-				+0.7
3,339,209	-				-1.8
3,339,239	+				-0.3
3,339,255	+				+0.6
3,339,255	+				-3.3
3,339,301	+				-0.8
3,339,309	-				+0.5
3,339,309	-				-0.1
3,339,309	-				-0.0
3,339,346	+				-0.5
3,339,346	+				-1.3
3,339,350	+				-1.4
3,339,417	-	kdsD	b3197	0.13	-1.0
3,339,447	+	kdsD	b3197	0.16	-1.5
3,339,516	-	kdsD	b3197	0.23	+0.3
3,339,536	+	kdsD	b3197	0.25	-1.7
3,339,579	-	kdsD	b3197	0.29	-0.9
3,339,579	-	kdsD	b3197	0.29	-0.7
3,339,584	+	kdsD	b3197	0.30	-0.4
3,339,590	-	kdsD	b3197	0.31	+0.9
3,339,596	+	kdsD	b3197	0.31	-0.8
3,339,596	+	kdsD	b3197	0.31	-0.7
3,339,604	-	kdsD	b3197	0.32	-0.1
3,339,635	-	kdsD	b3197	0.35	-0.7
3,339,649	-	kdsD	b3197	0.37	-2.5
3,339,649	-	kdsD	b3197	0.37	-0.7
3,339,719	+	kdsD	b3197	0.44	-2.0
3,339,720	-	kdsD	b3197	0.44	-1.0
3,339,720	-	kdsD	b3197	0.44	-1.3
3,339,773	+	kdsD	b3197	0.49	-1.1
3,339,773	+	kdsD	b3197	0.49	-1.5
3,339,778	-	kdsD	b3197	0.50	-0.7
3,339,778	-	kdsD	b3197	0.50	-1.0
3,339,778	-	kdsD	b3197	0.50	-0.5
3,339,791	+	kdsD	b3197	0.51	-0.1
3,339,791	+	kdsD	b3197	0.51	-2.1
3,339,829	-	kdsD	b3197	0.55	-0.6
3,339,864	+	kdsD	b3197	0.58	+0.2
3,339,868	-	kdsD	b3197	0.59	-0.1
3,339,876	+	kdsD	b3197	0.60	-0.2
3,339,879	-	kdsD	b3197	0.60	+0.0
3,339,879	-	kdsD	b3197	0.60	+0.4
3,339,924	+	kdsD	b3197	0.64	-2.3
3,339,974	+	kdsD	b3197	0.70	-0.7
3,340,032	+	kdsD	b3197	0.75	-0.8
3,340,105	-	kdsD	b3197	0.83	+0.9
3,340,129	+	kdsD	b3197	0.85	-1.5
3,340,129	+	kdsD	b3197	0.85	-1.1
3,340,203	+				-0.7
3,340,203	+				-0.7
3,340,231	+				-0.6
3,340,269	+				-0.6
3,340,326	+				-0.5
3,340,326	+				+0.1
3,340,326	+				-2.7
3,340,374	+	kdsC	b3198	0.14	+0.7
3,340,374	+	kdsC	b3198	0.14	-0.5
3,340,391	+	kdsC	b3198	0.17	+0.9
3,340,391	+	kdsC	b3198	0.17	-0.5
3,340,736	+	kdsC	b3198	0.78	+0.2
3,341,218	+	yrbK	b3199	0.62	-0.1
3,341,218	+	yrbK	b3199	0.62	+0.9
3,341,256	+	yrbK	b3199	0.69	-1.8
3,341,256	+	yrbK	b3199	0.69	-2.8