Experiment: LB Anaerobic with Doxycycline hyclate 0.000000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yncH and rhsE are separated by 749 nucleotides rhsE and ydcD overlap by 17 nucleotides ydcD and yncI are separated by 181 nucleotides
b1455: yncH - hypothetical protein (NCBI), at 1,524,964 to 1,525,176
yncH
b1456: rhsE - rhsE element core protein RshE (RefSeq), at 1,525,926 to 1,527,962
rhsE
b1457: ydcD - hypothetical protein (NCBI), at 1,527,946 to 1,528,428
ydcD
b1459: yncI - hypothetical protein (NCBI), at 1,528,610 to 1,529,663
yncI
Position (kb)
1525
1526
1527
1528 Strain fitness (log2 ratio)
-2
-1
0
1 at 1525.932 kb on + strand at 1525.932 kb on + strand at 1525.953 kb on + strand at 1525.953 kb on + strand at 1525.953 kb on + strand at 1526.080 kb on + strand at 1527.372 kb on + strand, within rhsE at 1527.416 kb on + strand, within rhsE at 1527.419 kb on + strand, within rhsE at 1527.435 kb on - strand, within rhsE at 1527.462 kb on + strand, within rhsE at 1527.506 kb on + strand, within rhsE at 1527.508 kb on + strand, within rhsE at 1527.508 kb on + strand, within rhsE at 1527.550 kb on + strand, within rhsE at 1527.550 kb on + strand, within rhsE at 1527.565 kb on + strand, within rhsE at 1527.573 kb on - strand, within rhsE at 1527.601 kb on + strand, within rhsE at 1527.601 kb on + strand, within rhsE at 1527.616 kb on + strand, within rhsE at 1527.659 kb on + strand, within rhsE at 1527.677 kb on + strand, within rhsE at 1527.686 kb on + strand, within rhsE at 1527.686 kb on + strand, within rhsE at 1527.763 kb on + strand at 1527.815 kb on + strand at 1527.877 kb on + strand at 1527.877 kb on + strand at 1527.901 kb on + strand at 1527.901 kb on + strand at 1527.901 kb on + strand at 1528.487 kb on - strand at 1528.494 kb on - strand at 1528.504 kb on - strand at 1528.504 kb on - strand at 1528.606 kb on + strand at 1528.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Doxycycline hyclate 0.000000390625 mM remove 1,525,932 + -1.2 1,525,932 + -1.2 1,525,953 + +0.0 1,525,953 + +0.8 1,525,953 + -0.1 1,526,080 + -0.5 1,527,372 + rhsE b1456 0.71 -1.5 1,527,416 + rhsE b1456 0.73 +0.2 1,527,419 + rhsE b1456 0.73 -0.6 1,527,435 - rhsE b1456 0.74 -1.4 1,527,462 + rhsE b1456 0.75 -0.7 1,527,506 + rhsE b1456 0.78 -0.6 1,527,508 + rhsE b1456 0.78 +1.1 1,527,508 + rhsE b1456 0.78 -0.6 1,527,550 + rhsE b1456 0.80 -0.3 1,527,550 + rhsE b1456 0.80 -0.6 1,527,565 + rhsE b1456 0.80 -1.2 1,527,573 - rhsE b1456 0.81 +0.4 1,527,601 + rhsE b1456 0.82 +0.4 1,527,601 + rhsE b1456 0.82 -0.5 1,527,616 + rhsE b1456 0.83 -1.5 1,527,659 + rhsE b1456 0.85 -0.8 1,527,677 + rhsE b1456 0.86 -0.2 1,527,686 + rhsE b1456 0.86 -2.0 1,527,686 + rhsE b1456 0.86 -1.2 1,527,763 + +0.2 1,527,815 + -0.6 1,527,877 + -0.6 1,527,877 + -0.6 1,527,901 + -0.6 1,527,901 + -1.2 1,527,901 + -0.6 1,528,487 - +0.4 1,528,494 - +0.4 1,528,504 - +0.4 1,528,504 - +0.4 1,528,606 + +0.4 1,528,606 + +0.4
Or see this region's nucleotide sequence