Experiment: KB with Isoliquiritigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0417 and Psyr_0418 are separated by 269 nucleotides Psyr_0418 and Psyr_0419 overlap by 4 nucleotides Psyr_0419 and Psyr_0420 are separated by 77 nucleotides
Psyr_0417: Psyr_0417 - gluconate permease GntT, at 455,430 to 456,779
_0417
Psyr_0418: Psyr_0418 - conserved domain protein, at 457,049 to 457,696
_0418
Psyr_0419: Psyr_0419 - conserved hypothetical protein, at 457,693 to 458,958
_0419
Psyr_0420: Psyr_0420 - General substrate transporter:Major facilitator superfamily, at 459,036 to 460,304
_0420
Position (kb) 457
458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 456.746 kb on - strand at 456.761 kb on + strand at 456.780 kb on - strand at 456.881 kb on + strand at 456.882 kb on - strand at 456.924 kb on + strand at 456.924 kb on + strand at 456.924 kb on + strand at 456.924 kb on + strand at 456.931 kb on - strand at 457.078 kb on - strand at 457.105 kb on + strand at 457.105 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.111 kb on + strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.112 kb on - strand at 457.140 kb on - strand, within Psyr_0418 at 457.140 kb on - strand, within Psyr_0418 at 457.140 kb on - strand, within Psyr_0418 at 457.230 kb on + strand, within Psyr_0418 at 457.231 kb on - strand, within Psyr_0418 at 457.389 kb on + strand, within Psyr_0418 at 457.389 kb on + strand, within Psyr_0418 at 457.390 kb on - strand, within Psyr_0418 at 457.390 kb on - strand, within Psyr_0418 at 457.476 kb on + strand, within Psyr_0418 at 457.476 kb on + strand, within Psyr_0418 at 457.476 kb on + strand, within Psyr_0418 at 457.477 kb on - strand, within Psyr_0418 at 457.523 kb on + strand, within Psyr_0418 at 457.523 kb on + strand, within Psyr_0418 at 457.524 kb on - strand, within Psyr_0418 at 457.524 kb on - strand, within Psyr_0418 at 457.539 kb on + strand, within Psyr_0418 at 457.540 kb on - strand, within Psyr_0418 at 457.614 kb on + strand, within Psyr_0418 at 457.614 kb on + strand, within Psyr_0418 at 457.615 kb on - strand, within Psyr_0418 at 457.615 kb on - strand, within Psyr_0418 at 457.750 kb on + strand at 457.751 kb on - strand at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.828 kb on + strand, within Psyr_0419 at 457.829 kb on - strand, within Psyr_0419 at 457.829 kb on - strand, within Psyr_0419 at 457.829 kb on - strand, within Psyr_0419 at 457.913 kb on + strand, within Psyr_0419 at 457.914 kb on - strand, within Psyr_0419 at 457.914 kb on - strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.122 kb on + strand, within Psyr_0419 at 458.123 kb on - strand, within Psyr_0419 at 458.123 kb on - strand, within Psyr_0419 at 458.123 kb on - strand, within Psyr_0419 at 458.150 kb on - strand, within Psyr_0419 at 458.161 kb on - strand, within Psyr_0419 at 458.276 kb on + strand, within Psyr_0419 at 458.276 kb on + strand, within Psyr_0419 at 458.277 kb on - strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.281 kb on + strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.282 kb on - strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.456 kb on + strand, within Psyr_0419 at 458.457 kb on - strand, within Psyr_0419 at 458.457 kb on - strand, within Psyr_0419 at 458.503 kb on + strand, within Psyr_0419 at 458.538 kb on - strand, within Psyr_0419 at 458.538 kb on - strand, within Psyr_0419 at 458.549 kb on - strand, within Psyr_0419 at 458.549 kb on - strand, within Psyr_0419 at 458.602 kb on + strand, within Psyr_0419 at 458.602 kb on + strand, within Psyr_0419 at 458.656 kb on + strand, within Psyr_0419 at 458.656 kb on + strand, within Psyr_0419 at 458.656 kb on + strand, within Psyr_0419 at 458.657 kb on - strand, within Psyr_0419 at 458.711 kb on + strand, within Psyr_0419 at 458.747 kb on - strand, within Psyr_0419 at 458.809 kb on + strand, within Psyr_0419 at 458.809 kb on + strand, within Psyr_0419 at 458.810 kb on - strand, within Psyr_0419 at 458.810 kb on - strand, within Psyr_0419 at 458.919 kb on - strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.997 kb on + strand at 458.998 kb on - strand at 458.998 kb on - strand at 458.998 kb on - strand at 458.998 kb on - strand at 459.027 kb on + strand at 459.027 kb on + strand at 459.027 kb on + strand at 459.028 kb on - strand at 459.028 kb on - strand at 459.028 kb on - strand at 459.028 kb on - strand at 459.111 kb on + strand at 459.111 kb on + strand at 459.111 kb on + strand at 459.112 kb on - strand at 459.112 kb on - strand at 459.143 kb on - strand at 459.191 kb on - strand, within Psyr_0420 at 459.193 kb on + strand, within Psyr_0420 at 459.194 kb on - strand, within Psyr_0420 at 459.194 kb on - strand, within Psyr_0420 at 459.205 kb on + strand, within Psyr_0420 at 459.205 kb on + strand, within Psyr_0420 at 459.205 kb on + strand, within Psyr_0420 at 459.206 kb on - strand, within Psyr_0420 at 459.206 kb on - strand, within Psyr_0420 at 459.399 kb on + strand, within Psyr_0420 at 459.400 kb on - strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.436 kb on + strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.437 kb on - strand, within Psyr_0420 at 459.451 kb on + strand, within Psyr_0420 at 459.451 kb on + strand, within Psyr_0420 at 459.451 kb on + strand, within Psyr_0420 at 459.452 kb on - strand, within Psyr_0420 at 459.452 kb on - strand, within Psyr_0420 at 459.493 kb on + strand, within Psyr_0420 at 459.494 kb on - strand, within Psyr_0420 at 459.523 kb on + strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.524 kb on - strand, within Psyr_0420 at 459.745 kb on + strand, within Psyr_0420 at 459.745 kb on + strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.746 kb on - strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.808 kb on + strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.809 kb on - strand, within Psyr_0420 at 459.859 kb on + strand, within Psyr_0420 at 459.859 kb on + strand, within Psyr_0420 at 459.860 kb on - strand, within Psyr_0420 at 459.860 kb on - strand, within Psyr_0420 at 459.900 kb on + strand, within Psyr_0420 at 459.900 kb on + strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420 at 459.901 kb on - strand, within Psyr_0420
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isoliquiritigenin 10 mM remove 456,746 - -0.3 456,761 + -0.6 456,780 - +1.0 456,881 + +0.5 456,882 - -0.7 456,924 + -0.0 456,924 + -1.1 456,924 + +1.4 456,924 + -0.7 456,931 - -0.6 457,078 - -0.5 457,105 + -0.2 457,105 + +0.1 457,111 + +0.1 457,111 + +0.2 457,111 + -0.1 457,111 + -1.5 457,111 + +1.1 457,111 + +0.3 457,111 + -0.6 457,112 - +2.8 457,112 - -2.3 457,112 - -0.3 457,112 - -0.8 457,112 - +0.8 457,112 - -1.2 457,140 - Psyr_0418 0.14 -2.0 457,140 - Psyr_0418 0.14 +0.0 457,140 - Psyr_0418 0.14 +1.0 457,230 + Psyr_0418 0.28 +0.9 457,231 - Psyr_0418 0.28 +0.4 457,389 + Psyr_0418 0.52 -0.1 457,389 + Psyr_0418 0.52 -1.5 457,390 - Psyr_0418 0.53 -0.1 457,390 - Psyr_0418 0.53 -0.8 457,476 + Psyr_0418 0.66 -0.8 457,476 + Psyr_0418 0.66 -0.3 457,476 + Psyr_0418 0.66 -0.3 457,477 - Psyr_0418 0.66 -1.2 457,523 + Psyr_0418 0.73 +1.0 457,523 + Psyr_0418 0.73 +0.8 457,524 - Psyr_0418 0.73 -1.2 457,524 - Psyr_0418 0.73 -2.8 457,539 + Psyr_0418 0.76 -1.5 457,540 - Psyr_0418 0.76 +0.2 457,614 + Psyr_0418 0.87 -1.0 457,614 + Psyr_0418 0.87 -0.2 457,615 - Psyr_0418 0.87 -0.4 457,615 - Psyr_0418 0.87 -1.9 457,750 + +0.1 457,751 - -1.3 457,828 + Psyr_0419 0.11 +1.7 457,828 + Psyr_0419 0.11 +0.7 457,828 + Psyr_0419 0.11 +2.4 457,828 + Psyr_0419 0.11 +1.2 457,828 + Psyr_0419 0.11 -0.8 457,828 + Psyr_0419 0.11 +0.2 457,829 - Psyr_0419 0.11 +1.9 457,829 - Psyr_0419 0.11 -0.5 457,829 - Psyr_0419 0.11 +0.8 457,913 + Psyr_0419 0.17 +1.4 457,914 - Psyr_0419 0.17 -0.3 457,914 - Psyr_0419 0.17 +0.2 458,122 + Psyr_0419 0.34 -0.1 458,122 + Psyr_0419 0.34 -0.6 458,122 + Psyr_0419 0.34 +1.2 458,122 + Psyr_0419 0.34 +0.2 458,122 + Psyr_0419 0.34 +0.1 458,123 - Psyr_0419 0.34 +0.8 458,123 - Psyr_0419 0.34 +1.2 458,123 - Psyr_0419 0.34 -1.9 458,150 - Psyr_0419 0.36 +1.2 458,161 - Psyr_0419 0.37 +1.1 458,276 + Psyr_0419 0.46 +2.2 458,276 + Psyr_0419 0.46 -0.5 458,277 - Psyr_0419 0.46 +0.7 458,281 + Psyr_0419 0.46 +0.5 458,281 + Psyr_0419 0.46 -0.2 458,281 + Psyr_0419 0.46 -1.0 458,281 + Psyr_0419 0.46 -1.5 458,282 - Psyr_0419 0.47 +1.3 458,282 - Psyr_0419 0.47 +1.4 458,282 - Psyr_0419 0.47 -0.1 458,282 - Psyr_0419 0.47 -0.6 458,282 - Psyr_0419 0.47 -0.6 458,282 - Psyr_0419 0.47 +2.2 458,282 - Psyr_0419 0.47 -2.0 458,456 + Psyr_0419 0.60 -0.9 458,456 + Psyr_0419 0.60 +0.4 458,456 + Psyr_0419 0.60 -0.3 458,456 + Psyr_0419 0.60 +2.8 458,456 + Psyr_0419 0.60 +0.2 458,456 + Psyr_0419 0.60 +0.5 458,456 + Psyr_0419 0.60 +0.5 458,456 + Psyr_0419 0.60 -0.2 458,456 + Psyr_0419 0.60 +1.8 458,457 - Psyr_0419 0.60 +2.6 458,457 - Psyr_0419 0.60 -0.6 458,503 + Psyr_0419 0.64 +0.7 458,538 - Psyr_0419 0.67 +0.0 458,538 - Psyr_0419 0.67 -1.1 458,549 - Psyr_0419 0.68 +1.8 458,549 - Psyr_0419 0.68 +1.0 458,602 + Psyr_0419 0.72 +2.4 458,602 + Psyr_0419 0.72 -0.7 458,656 + Psyr_0419 0.76 -0.1 458,656 + Psyr_0419 0.76 -1.5 458,656 + Psyr_0419 0.76 -0.6 458,657 - Psyr_0419 0.76 +0.5 458,711 + Psyr_0419 0.80 -0.1 458,747 - Psyr_0419 0.83 +2.0 458,809 + Psyr_0419 0.88 -2.5 458,809 + Psyr_0419 0.88 -0.9 458,810 - Psyr_0419 0.88 +0.2 458,810 - Psyr_0419 0.88 -1.2 458,919 - +0.8 458,997 + -1.1 458,997 + -0.4 458,997 + +0.2 458,997 + -0.8 458,997 + -1.1 458,998 - -1.3 458,998 - -0.1 458,998 - -0.4 458,998 - -1.0 459,027 + -1.0 459,027 + -0.1 459,027 + +0.6 459,028 - +0.0 459,028 - +1.3 459,028 - -0.7 459,028 - +0.7 459,111 + -1.9 459,111 + +0.4 459,111 + +0.6 459,112 - +1.3 459,112 - -0.8 459,143 - -0.7 459,191 - Psyr_0420 0.12 -0.5 459,193 + Psyr_0420 0.12 +1.3 459,194 - Psyr_0420 0.12 +0.3 459,194 - Psyr_0420 0.12 -0.7 459,205 + Psyr_0420 0.13 +1.1 459,205 + Psyr_0420 0.13 +1.7 459,205 + Psyr_0420 0.13 +1.0 459,206 - Psyr_0420 0.13 +2.3 459,206 - Psyr_0420 0.13 +0.4 459,399 + Psyr_0420 0.29 +0.7 459,400 - Psyr_0420 0.29 +0.1 459,436 + Psyr_0420 0.32 +1.3 459,436 + Psyr_0420 0.32 -0.5 459,436 + Psyr_0420 0.32 +0.9 459,436 + Psyr_0420 0.32 +0.1 459,436 + Psyr_0420 0.32 +2.1 459,436 + Psyr_0420 0.32 -0.6 459,436 + Psyr_0420 0.32 -0.2 459,436 + Psyr_0420 0.32 -0.0 459,437 - Psyr_0420 0.32 -1.2 459,437 - Psyr_0420 0.32 +2.3 459,437 - Psyr_0420 0.32 -1.2 459,437 - Psyr_0420 0.32 +0.3 459,451 + Psyr_0420 0.33 +1.0 459,451 + Psyr_0420 0.33 -0.9 459,451 + Psyr_0420 0.33 -1.6 459,452 - Psyr_0420 0.33 +0.7 459,452 - Psyr_0420 0.33 +0.8 459,493 + Psyr_0420 0.36 +1.4 459,494 - Psyr_0420 0.36 +1.0 459,523 + Psyr_0420 0.38 +1.8 459,524 - Psyr_0420 0.38 +0.6 459,524 - Psyr_0420 0.38 +1.5 459,524 - Psyr_0420 0.38 +1.4 459,524 - Psyr_0420 0.38 -0.9 459,524 - Psyr_0420 0.38 -1.2 459,524 - Psyr_0420 0.38 +0.2 459,524 - Psyr_0420 0.38 +2.3 459,745 + Psyr_0420 0.56 -2.0 459,745 + Psyr_0420 0.56 +0.6 459,746 - Psyr_0420 0.56 +1.3 459,746 - Psyr_0420 0.56 +0.3 459,746 - Psyr_0420 0.56 -0.4 459,746 - Psyr_0420 0.56 +1.0 459,746 - Psyr_0420 0.56 -1.3 459,746 - Psyr_0420 0.56 -0.7 459,746 - Psyr_0420 0.56 -1.9 459,808 + Psyr_0420 0.61 +1.3 459,808 + Psyr_0420 0.61 -2.0 459,808 + Psyr_0420 0.61 -0.1 459,808 + Psyr_0420 0.61 +0.6 459,808 + Psyr_0420 0.61 +0.8 459,808 + Psyr_0420 0.61 -0.6 459,808 + Psyr_0420 0.61 -1.0 459,808 + Psyr_0420 0.61 +1.3 459,808 + Psyr_0420 0.61 -0.4 459,809 - Psyr_0420 0.61 -0.9 459,809 - Psyr_0420 0.61 -0.4 459,809 - Psyr_0420 0.61 -0.4 459,809 - Psyr_0420 0.61 -0.0 459,809 - Psyr_0420 0.61 +1.3 459,809 - Psyr_0420 0.61 +3.3 459,809 - Psyr_0420 0.61 -1.3 459,809 - Psyr_0420 0.61 -0.1 459,809 - Psyr_0420 0.61 +0.4 459,809 - Psyr_0420 0.61 -1.9 459,809 - Psyr_0420 0.61 +1.6 459,859 + Psyr_0420 0.65 -0.5 459,859 + Psyr_0420 0.65 -0.5 459,860 - Psyr_0420 0.65 -0.2 459,860 - Psyr_0420 0.65 -0.5 459,900 + Psyr_0420 0.68 -2.0 459,900 + Psyr_0420 0.68 +2.0 459,901 - Psyr_0420 0.68 -1.5 459,901 - Psyr_0420 0.68 -0.6 459,901 - Psyr_0420 0.68 -0.7 459,901 - Psyr_0420 0.68 +2.0 459,901 - Psyr_0420 0.68 -1.3 459,901 - Psyr_0420 0.68 +0.3 459,901 - Psyr_0420 0.68 +0.7
Or see this region's nucleotide sequence