Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0812

Experiment: KB with Avocatin B 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0811 and Psyr_0812 are separated by 27 nucleotidesPsyr_0812 and Psyr_0813 are separated by 37 nucleotidesPsyr_0813 and Psyr_0814 are separated by 209 nucleotides Psyr_0811: Psyr_0811 - Integral membrane protein TerC, at 915,949 to 916,983 _0811 Psyr_0812: Psyr_0812 - stress protein, at 917,011 to 917,586 _0812 Psyr_0813: Psyr_0813 - stress protein, at 917,624 to 918,202 _0813 Psyr_0814: Psyr_0814 - Protein of unknown function DUF124, at 918,412 to 919,287 _0814 Position (kb) 917 918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 916.129 kb on + strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.130 kb on - strand, within Psyr_0811at 916.361 kb on + strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.362 kb on - strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.364 kb on + strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.365 kb on - strand, within Psyr_0811at 916.457 kb on - strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.747 kb on + strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.748 kb on - strand, within Psyr_0811at 916.846 kb on - strand, within Psyr_0811at 917.078 kb on + strand, within Psyr_0812at 917.078 kb on + strand, within Psyr_0812at 917.078 kb on + strand, within Psyr_0812at 917.079 kb on - strand, within Psyr_0812at 917.197 kb on + strand, within Psyr_0812at 917.197 kb on + strand, within Psyr_0812at 917.402 kb on + strand, within Psyr_0812at 917.492 kb on - strand, within Psyr_0812at 917.549 kb on + strandat 917.550 kb on - strandat 917.631 kb on + strandat 917.631 kb on + strandat 917.632 kb on - strandat 917.632 kb on - strandat 917.641 kb on + strandat 917.697 kb on + strand, within Psyr_0813at 917.698 kb on - strand, within Psyr_0813at 917.810 kb on + strand, within Psyr_0813at 917.810 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.005 kb on + strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.006 kb on - strand, within Psyr_0813at 918.104 kb on + strand, within Psyr_0813at 918.104 kb on + strand, within Psyr_0813at 918.253 kb on + strandat 918.393 kb on + strandat 918.393 kb on + strandat 918.393 kb on + strandat 918.393 kb on + strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.394 kb on - strandat 918.401 kb on + strandat 918.401 kb on + strandat 918.401 kb on + strandat 918.402 kb on - strandat 918.402 kb on - strandat 918.402 kb on - strandat 918.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM
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916,129 + Psyr_0811 0.17 -0.6
916,130 - Psyr_0811 0.17 -2.0
916,130 - Psyr_0811 0.17 -1.4
916,130 - Psyr_0811 0.17 -1.5
916,130 - Psyr_0811 0.17 -1.1
916,361 + Psyr_0811 0.40 -1.9
916,362 - Psyr_0811 0.40 -0.0
916,362 - Psyr_0811 0.40 -1.1
916,362 - Psyr_0811 0.40 +2.5
916,364 + Psyr_0811 0.40 +0.1
916,364 + Psyr_0811 0.40 +0.1
916,364 + Psyr_0811 0.40 -0.8
916,365 - Psyr_0811 0.40 -0.6
916,365 - Psyr_0811 0.40 -1.2
916,365 - Psyr_0811 0.40 -1.3
916,365 - Psyr_0811 0.40 -0.6
916,457 - Psyr_0811 0.49 +0.2
916,747 + Psyr_0811 0.77 -0.7
916,747 + Psyr_0811 0.77 -1.9
916,747 + Psyr_0811 0.77 -0.2
916,748 - Psyr_0811 0.77 -0.1
916,748 - Psyr_0811 0.77 -1.1
916,748 - Psyr_0811 0.77 +0.7
916,846 - Psyr_0811 0.87 -1.3
917,078 + Psyr_0812 0.12 +1.0
917,078 + Psyr_0812 0.12 +0.2
917,078 + Psyr_0812 0.12 -1.0
917,079 - Psyr_0812 0.12 -0.2
917,197 + Psyr_0812 0.32 -0.2
917,197 + Psyr_0812 0.32 +0.8
917,402 + Psyr_0812 0.68 +0.7
917,492 - Psyr_0812 0.84 +1.3
917,549 + -0.8
917,550 - -1.5
917,631 + -0.7
917,631 + -0.2
917,632 - -0.3
917,632 - -0.3
917,641 + +1.2
917,697 + Psyr_0813 0.13 -0.8
917,698 - Psyr_0813 0.13 +0.8
917,810 + Psyr_0813 0.32 +0.1
917,810 + Psyr_0813 0.32 +0.4
918,005 + Psyr_0813 0.66 -0.1
918,005 + Psyr_0813 0.66 +0.3
918,005 + Psyr_0813 0.66 +0.9
918,005 + Psyr_0813 0.66 -0.4
918,005 + Psyr_0813 0.66 -1.6
918,005 + Psyr_0813 0.66 -1.8
918,005 + Psyr_0813 0.66 -0.4
918,005 + Psyr_0813 0.66 +0.3
918,006 - Psyr_0813 0.66 -0.8
918,006 - Psyr_0813 0.66 +2.9
918,006 - Psyr_0813 0.66 -0.1
918,006 - Psyr_0813 0.66 -0.2
918,006 - Psyr_0813 0.66 +0.4
918,006 - Psyr_0813 0.66 +0.7
918,104 + Psyr_0813 0.83 +0.1
918,104 + Psyr_0813 0.83 -0.2
918,253 + +0.2
918,393 + -0.1
918,393 + -1.1
918,393 + +0.8
918,393 + +0.3
918,394 - +0.5
918,394 - +0.7
918,394 - -0.4
918,401 + +0.5
918,401 + +0.5
918,401 + +0.2
918,402 - +0.7
918,402 - -0.1
918,402 - +3.0
918,431 - +0.1

Or see this region's nucleotide sequence