Experiment: KB with Avocatin B 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0786 and Psyr_0787 are separated by 46 nucleotides Psyr_0787 and Psyr_0788 are separated by 23 nucleotides Psyr_0788 and Psyr_0789 are separated by 9 nucleotides Psyr_0789 and Psyr_0790 are separated by 552 nucleotides
Psyr_0786: Psyr_0786 - CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt, at 892,574 to 894,691
_0786
Psyr_0787: Psyr_0787 - Sulfate transporter/antisigma-factor antagonist STAS, at 894,738 to 895,028
_0787
Psyr_0788: Psyr_0788 - Response regulator receiver, at 895,052 to 895,420
_0788
Psyr_0789: Psyr_0789 - chemotaxis sensory transducer, at 895,430 to 896,647
_0789
Psyr_0790: Psyr_0790 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 897,200 to 898,498
_0790
Position (kb) 895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 894.509 kb on - strand at 894.682 kb on + strand at 894.682 kb on + strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.685 kb on + strand at 894.685 kb on + strand at 894.685 kb on + strand at 894.686 kb on - strand at 894.686 kb on - strand at 894.722 kb on - strand at 894.739 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.762 kb on + strand at 894.762 kb on + strand at 894.762 kb on + strand at 894.763 kb on - strand at 894.763 kb on - strand at 894.763 kb on - strand at 894.961 kb on + strand, within Psyr_0787 at 894.961 kb on + strand, within Psyr_0787 at 894.961 kb on + strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.341 kb on + strand, within Psyr_0788 at 895.406 kb on + strand at 895.406 kb on + strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.415 kb on - strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.509 kb on + strand at 895.509 kb on + strand at 895.510 kb on - strand at 895.513 kb on + strand at 895.514 kb on - strand at 895.514 kb on - strand at 895.514 kb on - strand at 895.619 kb on + strand, within Psyr_0789 at 895.620 kb on - strand, within Psyr_0789 at 895.620 kb on - strand, within Psyr_0789 at 895.699 kb on - strand, within Psyr_0789 at 895.766 kb on + strand, within Psyr_0789 at 895.766 kb on + strand, within Psyr_0789 at 895.766 kb on + strand, within Psyr_0789 at 895.767 kb on - strand, within Psyr_0789 at 895.767 kb on - strand, within Psyr_0789 at 895.767 kb on - strand, within Psyr_0789 at 896.065 kb on - strand, within Psyr_0789 at 896.144 kb on + strand, within Psyr_0789 at 896.145 kb on - strand, within Psyr_0789 at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.626 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.631 kb on + strand at 896.632 kb on - strand at 896.632 kb on - strand at 896.632 kb on - strand at 896.677 kb on + strand at 896.677 kb on + strand at 896.678 kb on - strand at 896.678 kb on - strand at 896.693 kb on + strand at 896.771 kb on + strand at 896.933 kb on - strand at 897.147 kb on + strand at 897.201 kb on + strand at 897.201 kb on + strand at 897.279 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.315 kb on + strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.316 kb on - strand at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.426 kb on + strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.427 kb on - strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.432 kb on + strand, within Psyr_0790 at 897.433 kb on - strand, within Psyr_0790 at 897.433 kb on - strand, within Psyr_0790 at 897.578 kb on - strand, within Psyr_0790
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin B 10 mM remove 894,509 - +0.4 894,682 + -0.2 894,682 + -0.3 894,683 - +0.4 894,683 - +0.2 894,683 - -2.5 894,683 - +1.6 894,685 + -0.1 894,685 + -0.1 894,685 + -0.1 894,686 - +1.3 894,686 - +0.4 894,722 - -0.0 894,739 + +0.2 894,758 + +0.5 894,758 + -0.1 894,758 + +0.1 894,758 + -0.2 894,758 + +0.2 894,758 + -1.4 894,758 + +1.9 894,758 + +0.9 894,759 - +0.2 894,759 - -0.1 894,759 - +0.2 894,759 - -1.2 894,762 + -1.0 894,762 + -1.4 894,762 + +0.3 894,763 - -1.4 894,763 - +0.6 894,763 - -0.4 894,961 + Psyr_0787 0.77 +2.1 894,961 + Psyr_0787 0.77 -0.6 894,961 + Psyr_0787 0.77 -1.0 894,962 - Psyr_0787 0.77 -1.4 894,962 - Psyr_0787 0.77 -0.5 894,962 - Psyr_0787 0.77 +1.0 894,962 - Psyr_0787 0.77 +0.8 894,962 - Psyr_0787 0.77 +0.6 894,962 - Psyr_0787 0.77 -1.6 894,962 - Psyr_0787 0.77 +1.0 894,962 - Psyr_0787 0.77 +0.8 894,982 - Psyr_0787 0.84 -0.4 894,982 - Psyr_0787 0.84 +0.3 894,982 - Psyr_0787 0.84 +0.8 895,200 + Psyr_0788 0.40 -0.6 895,200 + Psyr_0788 0.40 -0.6 895,200 + Psyr_0788 0.40 +0.5 895,200 + Psyr_0788 0.40 +0.9 895,200 + Psyr_0788 0.40 -0.8 895,200 + Psyr_0788 0.40 -0.3 895,200 + Psyr_0788 0.40 +0.6 895,201 - Psyr_0788 0.40 -0.4 895,201 - Psyr_0788 0.40 +0.0 895,201 - Psyr_0788 0.40 -0.4 895,341 + Psyr_0788 0.78 +0.1 895,406 + +0.6 895,406 + -0.3 895,407 - -0.0 895,407 - -0.8 895,407 - -1.4 895,407 - +1.2 895,407 - -0.6 895,407 - +2.1 895,415 - +0.7 895,425 + +1.2 895,425 + -0.1 895,425 + -1.4 895,425 + +2.4 895,426 - -0.1 895,426 - +1.3 895,426 - +2.9 895,426 - -1.6 895,426 - -0.5 895,509 + -3.4 895,509 + -0.2 895,510 - +1.1 895,513 + +0.6 895,514 - +0.0 895,514 - +0.1 895,514 - -0.4 895,619 + Psyr_0789 0.16 +1.5 895,620 - Psyr_0789 0.16 +0.0 895,620 - Psyr_0789 0.16 +0.7 895,699 - Psyr_0789 0.22 +0.7 895,766 + Psyr_0789 0.28 +0.9 895,766 + Psyr_0789 0.28 +0.8 895,766 + Psyr_0789 0.28 +0.1 895,767 - Psyr_0789 0.28 +1.9 895,767 - Psyr_0789 0.28 +1.4 895,767 - Psyr_0789 0.28 -0.1 896,065 - Psyr_0789 0.52 -0.8 896,144 + Psyr_0789 0.59 +1.2 896,145 - Psyr_0789 0.59 -0.9 896,626 + -0.1 896,626 + +1.5 896,626 + +0.9 896,626 + -0.1 896,626 + +0.1 896,631 + -0.3 896,631 + +0.6 896,631 + -0.7 896,631 + -0.7 896,631 + -0.8 896,632 - +0.5 896,632 - +1.2 896,632 - +3.5 896,677 + +0.1 896,677 + +0.2 896,678 - +0.4 896,678 - -0.9 896,693 + -1.5 896,771 + +0.4 896,933 - +1.7 897,147 + -0.6 897,201 + -0.7 897,201 + +0.0 897,279 + +1.1 897,315 + -3.6 897,315 + -0.3 897,315 + -0.5 897,315 + -0.3 897,315 + -2.2 897,316 - +0.6 897,316 - +1.1 897,316 - -1.1 897,316 - -0.8 897,316 - +1.4 897,316 - -1.2 897,316 - +0.2 897,426 + Psyr_0790 0.17 +0.1 897,426 + Psyr_0790 0.17 +2.1 897,426 + Psyr_0790 0.17 -1.0 897,426 + Psyr_0790 0.17 -0.4 897,426 + Psyr_0790 0.17 -0.8 897,426 + Psyr_0790 0.17 -0.3 897,426 + Psyr_0790 0.17 +0.4 897,426 + Psyr_0790 0.17 -0.6 897,426 + Psyr_0790 0.17 -0.5 897,426 + Psyr_0790 0.17 +2.9 897,426 + Psyr_0790 0.17 -0.1 897,427 - Psyr_0790 0.17 -0.3 897,427 - Psyr_0790 0.17 +0.4 897,427 - Psyr_0790 0.17 +0.3 897,427 - Psyr_0790 0.17 -1.6 897,427 - Psyr_0790 0.17 -0.2 897,427 - Psyr_0790 0.17 -0.1 897,427 - Psyr_0790 0.17 -0.1 897,427 - Psyr_0790 0.17 -0.9 897,427 - Psyr_0790 0.17 -0.4 897,427 - Psyr_0790 0.17 +0.3 897,427 - Psyr_0790 0.17 -0.8 897,432 + Psyr_0790 0.18 -0.7 897,432 + Psyr_0790 0.18 -0.6 897,432 + Psyr_0790 0.18 +0.6 897,432 + Psyr_0790 0.18 +0.5 897,432 + Psyr_0790 0.18 -1.1 897,433 - Psyr_0790 0.18 -0.5 897,433 - Psyr_0790 0.18 +1.3 897,578 - Psyr_0790 0.29 +0.2
Or see this region's nucleotide sequence