Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3756 and Psyr_3757 overlap by 4 nucleotides Psyr_3757 and Psyr_3758 are separated by 234 nucleotides
Psyr_3756: Psyr_3756 - Na+/solute symporter, at 4,472,506 to 4,474,164
_3756
Psyr_3757: Psyr_3757 - Protein of unknown function DUF485, at 4,474,161 to 4,474,472
_3757
Psyr_3758: Psyr_3758 - Substrate-binding region of ABC-type glycine betaine transport system, at 4,474,707 to 4,475,561
_3758
Position (kb) 4474
4475
4476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.767 kb on + strand, within Psyr_3756 at 4473.768 kb on - strand, within Psyr_3756 at 4473.768 kb on - strand, within Psyr_3756 at 4473.768 kb on - strand at 4473.768 kb on - strand, within Psyr_3756 at 4473.824 kb on - strand, within Psyr_3756 at 4473.842 kb on + strand, within Psyr_3756 at 4473.843 kb on - strand, within Psyr_3756 at 4473.843 kb on - strand, within Psyr_3756 at 4473.869 kb on + strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.870 kb on - strand, within Psyr_3756 at 4473.885 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.911 kb on + strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.912 kb on - strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.968 kb on + strand, within Psyr_3756 at 4473.969 kb on - strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.971 kb on + strand, within Psyr_3756 at 4473.972 kb on - strand, within Psyr_3756 at 4473.972 kb on - strand, within Psyr_3756 at 4474.008 kb on - strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.016 kb on + strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.017 kb on - strand at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.228 kb on + strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.229 kb on - strand, within Psyr_3757 at 4474.242 kb on + strand, within Psyr_3757 at 4474.290 kb on - strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.308 kb on + strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.309 kb on - strand, within Psyr_3757 at 4474.363 kb on + strand, within Psyr_3757 at 4474.364 kb on - strand, within Psyr_3757 at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.456 kb on + strand at 4474.457 kb on - strand at 4474.508 kb on + strand at 4474.509 kb on - strand at 4474.519 kb on - strand at 4474.550 kb on + strand at 4474.550 kb on + strand at 4474.550 kb on + strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.551 kb on - strand at 4474.553 kb on + strand at 4474.554 kb on - strand at 4474.554 kb on - strand at 4474.556 kb on + strand at 4474.556 kb on + strand at 4474.556 kb on + strand at 4474.557 kb on - strand at 4474.567 kb on + strand at 4474.567 kb on + strand at 4474.567 kb on + strand at 4474.568 kb on - strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.573 kb on + strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.574 kb on - strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.577 kb on + strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.578 kb on - strand at 4474.708 kb on + strand at 4474.708 kb on + strand at 4474.921 kb on + strand, within Psyr_3758 at 4475.069 kb on + strand, within Psyr_3758 at 4475.069 kb on + strand at 4475.070 kb on - strand, within Psyr_3758 at 4475.071 kb on + strand, within Psyr_3758 at 4475.072 kb on - strand, within Psyr_3758 at 4475.203 kb on + strand, within Psyr_3758 at 4475.204 kb on - strand, within Psyr_3758 at 4475.204 kb on - strand, within Psyr_3758 at 4475.204 kb on - strand, within Psyr_3758 at 4475.251 kb on + strand, within Psyr_3758 at 4475.252 kb on - strand, within Psyr_3758 at 4475.252 kb on - strand, within Psyr_3758 at 4475.272 kb on + strand, within Psyr_3758 at 4475.272 kb on + strand, within Psyr_3758 at 4475.272 kb on + strand, within Psyr_3758 at 4475.273 kb on - strand, within Psyr_3758 at 4475.273 kb on - strand, within Psyr_3758 at 4475.281 kb on + strand, within Psyr_3758 at 4475.281 kb on + strand, within Psyr_3758 at 4475.282 kb on - strand, within Psyr_3758 at 4475.284 kb on + strand, within Psyr_3758 at 4475.284 kb on + strand, within Psyr_3758 at 4475.285 kb on - strand, within Psyr_3758 at 4475.285 kb on - strand, within Psyr_3758 at 4475.285 kb on - strand, within Psyr_3758 at 4475.465 kb on - strand, within Psyr_3758 at 4475.465 kb on - strand, within Psyr_3758 at 4475.520 kb on + strand at 4475.521 kb on - strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.889 kb on + strand at 4475.890 kb on - strand at 4475.891 kb on + strand at 4475.891 kb on + strand at 4475.892 kb on - strand at 4475.892 kb on - strand at 4476.087 kb on + strand at 4476.087 kb on + strand at 4476.088 kb on - strand at 4476.089 kb on + strand at 4476.089 kb on + strand at 4476.090 kb on - strand at 4476.099 kb on - strand at 4476.145 kb on + strand at 4476.219 kb on - strand at 4476.264 kb on + strand at 4476.264 kb on + strand at 4476.264 kb on + strand at 4476.265 kb on - strand at 4476.265 kb on - strand at 4476.265 kb on - strand at 4476.325 kb on + strand at 4476.394 kb on + strand at 4476.395 kb on - strand at 4476.432 kb on + strand at 4476.432 kb on + strand at 4476.432 kb on + strand at 4476.432 kb on + strand at 4476.433 kb on - strand at 4476.433 kb on - strand at 4476.434 kb on + strand at 4476.474 kb on + strand at 4476.474 kb on + strand at 4476.474 kb on + strand at 4476.475 kb on - strand at 4476.475 kb on - strand at 4476.475 kb on - strand at 4476.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 4,473,767 + Psyr_3756 0.76 +0.3 4,473,767 + Psyr_3756 0.76 -0.0 4,473,767 + Psyr_3756 0.76 -1.0 4,473,767 + Psyr_3756 0.76 +1.4 4,473,767 + Psyr_3756 0.76 +1.0 4,473,767 + Psyr_3756 0.76 -0.2 4,473,767 + Psyr_3756 0.76 -0.3 4,473,767 + Psyr_3756 0.76 +0.4 4,473,767 + Psyr_3756 0.76 -0.9 4,473,767 + Psyr_3756 0.76 +0.4 4,473,768 - Psyr_3756 0.76 -0.2 4,473,768 - Psyr_3756 0.76 +0.4 4,473,768 - +0.2 4,473,768 - Psyr_3756 0.76 +0.2 4,473,824 - Psyr_3756 0.79 -0.3 4,473,842 + Psyr_3756 0.81 -0.1 4,473,843 - Psyr_3756 0.81 +0.6 4,473,843 - Psyr_3756 0.81 +0.6 4,473,869 + Psyr_3756 0.82 +0.0 4,473,870 - Psyr_3756 0.82 +0.8 4,473,870 - Psyr_3756 0.82 -0.3 4,473,870 - Psyr_3756 0.82 -1.0 4,473,870 - Psyr_3756 0.82 -1.7 4,473,885 + Psyr_3756 0.83 -0.0 4,473,911 + Psyr_3756 0.85 +0.7 4,473,911 + Psyr_3756 0.85 -0.7 4,473,911 + Psyr_3756 0.85 +0.2 4,473,911 + Psyr_3756 0.85 -1.4 4,473,911 + Psyr_3756 0.85 +0.9 4,473,912 - Psyr_3756 0.85 +0.0 4,473,912 - Psyr_3756 0.85 +0.6 4,473,912 - Psyr_3756 0.85 -0.3 4,473,912 - Psyr_3756 0.85 +1.7 4,473,912 - Psyr_3756 0.85 -0.7 4,473,912 - Psyr_3756 0.85 -0.7 4,473,912 - Psyr_3756 0.85 -0.9 4,473,912 - Psyr_3756 0.85 +0.3 4,473,912 - Psyr_3756 0.85 -1.3 4,473,968 + Psyr_3756 0.88 +0.9 4,473,968 + Psyr_3756 0.88 -0.8 4,473,968 + Psyr_3756 0.88 -2.0 4,473,969 - Psyr_3756 0.88 -1.0 4,473,971 + Psyr_3756 0.88 -0.4 4,473,971 + Psyr_3756 0.88 -0.6 4,473,971 + Psyr_3756 0.88 -0.8 4,473,972 - Psyr_3756 0.88 +1.6 4,473,972 - Psyr_3756 0.88 +1.3 4,474,008 - -1.3 4,474,016 + -1.1 4,474,016 + -1.3 4,474,016 + +0.3 4,474,016 + +0.1 4,474,017 - +0.1 4,474,017 - +1.6 4,474,017 - -0.9 4,474,017 - -0.0 4,474,017 - +1.3 4,474,017 - -0.5 4,474,228 + Psyr_3757 0.21 +0.5 4,474,228 + Psyr_3757 0.21 +0.8 4,474,228 + Psyr_3757 0.21 -1.3 4,474,228 + Psyr_3757 0.21 +1.9 4,474,228 + Psyr_3757 0.21 -0.8 4,474,228 + Psyr_3757 0.21 -1.0 4,474,228 + Psyr_3757 0.21 +0.7 4,474,228 + Psyr_3757 0.21 +0.0 4,474,229 - Psyr_3757 0.22 -1.3 4,474,229 - Psyr_3757 0.22 -1.1 4,474,229 - Psyr_3757 0.22 +1.5 4,474,229 - Psyr_3757 0.22 -1.0 4,474,229 - Psyr_3757 0.22 -0.3 4,474,229 - Psyr_3757 0.22 +0.9 4,474,229 - Psyr_3757 0.22 +0.3 4,474,229 - Psyr_3757 0.22 +0.8 4,474,229 - Psyr_3757 0.22 +0.2 4,474,229 - Psyr_3757 0.22 +0.5 4,474,229 - Psyr_3757 0.22 -0.0 4,474,229 - Psyr_3757 0.22 -0.9 4,474,229 - Psyr_3757 0.22 -0.2 4,474,242 + Psyr_3757 0.26 +0.6 4,474,290 - Psyr_3757 0.41 -0.6 4,474,308 + Psyr_3757 0.47 +0.6 4,474,308 + Psyr_3757 0.47 -1.3 4,474,308 + Psyr_3757 0.47 +0.2 4,474,309 - Psyr_3757 0.47 +0.9 4,474,309 - Psyr_3757 0.47 +1.3 4,474,309 - Psyr_3757 0.47 -0.7 4,474,363 + Psyr_3757 0.65 -0.5 4,474,364 - Psyr_3757 0.65 +0.9 4,474,456 + +0.0 4,474,456 + -0.1 4,474,456 + -0.6 4,474,456 + +0.2 4,474,456 + -0.8 4,474,456 + +0.9 4,474,456 + -0.5 4,474,457 - +0.8 4,474,508 + -0.5 4,474,509 - -1.2 4,474,519 - -0.8 4,474,550 + -1.8 4,474,550 + -0.5 4,474,550 + -0.6 4,474,551 - +0.7 4,474,551 - -0.2 4,474,551 - +0.2 4,474,551 - +1.5 4,474,553 + -0.4 4,474,554 - -0.5 4,474,554 - -0.7 4,474,556 + +2.5 4,474,556 + -0.7 4,474,556 + +1.1 4,474,557 - +1.3 4,474,567 + -0.8 4,474,567 + +1.2 4,474,567 + +0.4 4,474,568 - -1.5 4,474,573 + -0.1 4,474,573 + -0.3 4,474,573 + -0.4 4,474,573 + -0.3 4,474,574 - -3.1 4,474,574 - -0.1 4,474,574 - -1.3 4,474,574 - -0.4 4,474,574 - -0.3 4,474,574 - +0.5 4,474,574 - +1.2 4,474,574 - -0.2 4,474,574 - -1.7 4,474,577 + +0.6 4,474,577 + -1.4 4,474,577 + +0.4 4,474,577 + +0.1 4,474,578 - +0.0 4,474,578 - +0.4 4,474,578 - +1.7 4,474,578 - -0.0 4,474,578 - -1.1 4,474,708 + -1.0 4,474,708 + +1.1 4,474,921 + Psyr_3758 0.25 +0.9 4,475,069 + Psyr_3758 0.42 -0.3 4,475,069 + -1.4 4,475,070 - Psyr_3758 0.42 -0.3 4,475,071 + Psyr_3758 0.43 -1.9 4,475,072 - Psyr_3758 0.43 +0.9 4,475,203 + Psyr_3758 0.58 +0.8 4,475,204 - Psyr_3758 0.58 +0.5 4,475,204 - Psyr_3758 0.58 +1.5 4,475,204 - Psyr_3758 0.58 +1.6 4,475,251 + Psyr_3758 0.64 +0.8 4,475,252 - Psyr_3758 0.64 +1.4 4,475,252 - Psyr_3758 0.64 +0.6 4,475,272 + Psyr_3758 0.66 +1.9 4,475,272 + Psyr_3758 0.66 +0.5 4,475,272 + Psyr_3758 0.66 +0.1 4,475,273 - Psyr_3758 0.66 -2.5 4,475,273 - Psyr_3758 0.66 -0.3 4,475,281 + Psyr_3758 0.67 -3.5 4,475,281 + Psyr_3758 0.67 +1.9 4,475,282 - Psyr_3758 0.67 +0.3 4,475,284 + Psyr_3758 0.67 -0.5 4,475,284 + Psyr_3758 0.67 +1.2 4,475,285 - Psyr_3758 0.68 +2.3 4,475,285 - Psyr_3758 0.68 +1.7 4,475,285 - Psyr_3758 0.68 +0.3 4,475,465 - Psyr_3758 0.89 -1.6 4,475,465 - Psyr_3758 0.89 -0.8 4,475,520 + -0.5 4,475,521 - -0.4 4,475,889 + -2.2 4,475,889 + +0.9 4,475,889 + -1.0 4,475,889 + -1.0 4,475,889 + -1.1 4,475,890 - +0.9 4,475,891 + +1.0 4,475,891 + +0.4 4,475,892 - +1.6 4,475,892 - +0.3 4,476,087 + -0.4 4,476,087 + +0.2 4,476,088 - +0.2 4,476,089 + +0.2 4,476,089 + +0.4 4,476,090 - +0.3 4,476,099 - +2.1 4,476,145 + -1.2 4,476,219 - -1.2 4,476,264 + -1.3 4,476,264 + +0.8 4,476,264 + -0.1 4,476,265 - -0.9 4,476,265 - +0.9 4,476,265 - -0.6 4,476,325 + -0.3 4,476,394 + -0.6 4,476,395 - +0.8 4,476,432 + -0.9 4,476,432 + +0.1 4,476,432 + +2.5 4,476,432 + -0.0 4,476,433 - -1.7 4,476,433 - +1.2 4,476,434 + +4.5 4,476,474 + -3.1 4,476,474 + -0.4 4,476,474 + -1.1 4,476,475 - +0.2 4,476,475 - -0.7 4,476,475 - -2.9 4,476,475 - -0.5
Or see this region's nucleotide sequence