Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2394 and Psyr_2395 are separated by 101 nucleotides Psyr_2395 and Psyr_2396 overlap by 4 nucleotides Psyr_2396 and Psyr_2397 are separated by 97 nucleotides
Psyr_2394: Psyr_2394 - succinate semialdehyde dehydrogenase, at 2,775,689 to 2,777,080
_2394
Psyr_2395: Psyr_2395 - transcriptional regulator, LysR family, at 2,777,182 to 2,778,057
_2395
Psyr_2396: Psyr_2396 - Tartrate dehydrogenase, at 2,778,054 to 2,779,175
_2396
Psyr_2397: Psyr_2397 - transcriptional regulator, LysR family, at 2,779,273 to 2,780,187
_2397
Position (kb)
2778
2779
2780 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2777.074 kb on + strand at 2777.116 kb on + strand at 2777.116 kb on + strand at 2777.116 kb on + strand at 2777.116 kb on + strand at 2777.116 kb on + strand at 2777.116 kb on + strand at 2777.116 kb on + strand at 2777.117 kb on - strand at 2777.118 kb on + strand at 2777.119 kb on - strand at 2777.119 kb on - strand at 2777.380 kb on + strand, within Psyr_2395 at 2777.380 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.733 kb on + strand, within Psyr_2395 at 2777.734 kb on - strand, within Psyr_2395 at 2777.734 kb on - strand, within Psyr_2395 at 2777.734 kb on - strand, within Psyr_2395 at 2777.734 kb on - strand, within Psyr_2395 at 2777.734 kb on - strand, within Psyr_2395 at 2777.928 kb on + strand, within Psyr_2395 at 2778.056 kb on - strand at 2778.728 kb on - strand, within Psyr_2396 at 2778.994 kb on + strand, within Psyr_2396 at 2778.998 kb on - strand, within Psyr_2396 at 2779.021 kb on + strand, within Psyr_2396 at 2779.021 kb on + strand, within Psyr_2396 at 2779.127 kb on + strand at 2779.217 kb on - strand at 2779.229 kb on + strand at 2779.375 kb on + strand, within Psyr_2397 at 2779.375 kb on + strand, within Psyr_2397 at 2779.389 kb on + strand, within Psyr_2397 at 2779.390 kb on - strand, within Psyr_2397 at 2779.390 kb on - strand, within Psyr_2397 at 2780.062 kb on + strand, within Psyr_2397 at 2780.062 kb on + strand, within Psyr_2397 at 2780.063 kb on - strand, within Psyr_2397 at 2780.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 2,777,074 + +0.1 2,777,116 + -4.1 2,777,116 + +0.2 2,777,116 + +0.2 2,777,116 + +0.5 2,777,116 + -0.1 2,777,116 + -0.6 2,777,116 + +0.1 2,777,117 - -0.7 2,777,118 + -0.2 2,777,119 - +0.6 2,777,119 - +0.4 2,777,380 + Psyr_2395 0.23 -1.0 2,777,380 + Psyr_2395 0.23 +1.7 2,777,733 + Psyr_2395 0.63 +1.3 2,777,733 + Psyr_2395 0.63 +1.1 2,777,733 + Psyr_2395 0.63 +3.0 2,777,733 + Psyr_2395 0.63 -1.1 2,777,733 + Psyr_2395 0.63 +2.0 2,777,733 + Psyr_2395 0.63 -0.9 2,777,733 + Psyr_2395 0.63 -0.5 2,777,733 + Psyr_2395 0.63 -2.0 2,777,733 + Psyr_2395 0.63 -0.6 2,777,734 - Psyr_2395 0.63 +1.2 2,777,734 - Psyr_2395 0.63 +2.6 2,777,734 - Psyr_2395 0.63 +0.3 2,777,734 - Psyr_2395 0.63 -1.3 2,777,734 - Psyr_2395 0.63 +0.9 2,777,928 + Psyr_2395 0.85 -0.6 2,778,056 - +1.8 2,778,728 - Psyr_2396 0.60 +1.3 2,778,994 + Psyr_2396 0.84 -1.3 2,778,998 - Psyr_2396 0.84 -1.0 2,779,021 + Psyr_2396 0.86 -0.4 2,779,021 + Psyr_2396 0.86 -0.8 2,779,127 + -0.9 2,779,217 - -0.1 2,779,229 + +1.3 2,779,375 + Psyr_2397 0.11 +0.5 2,779,375 + Psyr_2397 0.11 -0.5 2,779,389 + Psyr_2397 0.13 +0.0 2,779,390 - Psyr_2397 0.13 +0.3 2,779,390 - Psyr_2397 0.13 -1.2 2,780,062 + Psyr_2397 0.86 +0.5 2,780,062 + Psyr_2397 0.86 -1.3 2,780,063 - Psyr_2397 0.86 +0.3 2,780,153 - +0.3
Or see this region's nucleotide sequence