Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0305

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0303 and Psyr_0304 are separated by 208 nucleotidesPsyr_0304 and Psyr_0305 are separated by 0 nucleotidesPsyr_0305 and Psyr_0306 are separated by 274 nucleotides Psyr_0303: Psyr_0303 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein, at 323,173 to 324,141 _0303 Psyr_0304: Psyr_0304 - ChaC-like protein, at 324,350 to 325,018 _0304 Psyr_0305: Psyr_0305 - GlpT transporter:Glycerol-3-phosphate transporter, at 325,019 to 326,368 _0305 Psyr_0306: Psyr_0306 - TonB, C-terminal, at 326,643 to 327,308 _0306 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 324.055 kb on + strandat 324.055 kb on + strandat 324.056 kb on - strandat 324.056 kb on - strandat 324.116 kb on + strandat 324.116 kb on + strandat 324.117 kb on - strandat 324.172 kb on + strandat 324.173 kb on - strandat 324.190 kb on + strandat 324.190 kb on + strandat 324.191 kb on - strandat 324.191 kb on - strandat 324.230 kb on + strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.515 kb on + strand, within Psyr_0304at 324.596 kb on + strand, within Psyr_0304at 324.597 kb on - strand, within Psyr_0304at 324.645 kb on + strand, within Psyr_0304at 324.804 kb on + strand, within Psyr_0304at 324.805 kb on - strand, within Psyr_0304at 324.845 kb on + strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 325.192 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.353 kb on + strand, within Psyr_0305at 325.353 kb on + strand, within Psyr_0305at 325.354 kb on - strand, within Psyr_0305at 325.354 kb on - strand, within Psyr_0305at 325.485 kb on + strand, within Psyr_0305at 325.485 kb on + strand, within Psyr_0305at 325.486 kb on - strand, within Psyr_0305at 325.486 kb on - strand, within Psyr_0305at 325.534 kb on - strand, within Psyr_0305at 325.572 kb on + strand, within Psyr_0305at 325.572 kb on + strand, within Psyr_0305at 325.573 kb on - strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.600 kb on - strand, within Psyr_0305at 325.600 kb on - strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.678 kb on - strand, within Psyr_0305at 325.701 kb on + strand, within Psyr_0305at 325.701 kb on + strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 326.088 kb on + strand, within Psyr_0305at 326.089 kb on - strand, within Psyr_0305at 326.188 kb on + strand, within Psyr_0305at 326.189 kb on - strand, within Psyr_0305at 326.189 kb on - strand, within Psyr_0305at 326.189 kb on - strand, within Psyr_0305at 326.190 kb on + strand, within Psyr_0305at 326.208 kb on + strand, within Psyr_0305at 326.209 kb on - strand, within Psyr_0305at 326.209 kb on - strand, within Psyr_0305at 326.244 kb on + strandat 326.244 kb on + strandat 326.245 kb on - strandat 326.245 kb on - strandat 326.245 kb on - strandat 326.245 kb on - strandat 326.302 kb on - strandat 326.384 kb on + strandat 326.385 kb on - strandat 326.385 kb on - strandat 326.459 kb on - strandat 326.523 kb on + strandat 326.539 kb on + strandat 326.539 kb on + strandat 326.587 kb on + strandat 326.587 kb on + strandat 326.588 kb on - strandat 326.636 kb on + strandat 326.636 kb on + strandat 326.637 kb on - strandat 326.637 kb on - strandat 326.637 kb on - strandat 326.721 kb on + strand, within Psyr_0306at 326.721 kb on + strand, within Psyr_0306at 326.721 kb on + strand, within Psyr_0306at 326.721 kb on + strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.722 kb on - strand, within Psyr_0306at 326.892 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.894 kb on + strand, within Psyr_0306at 326.895 kb on - strand, within Psyr_0306at 326.895 kb on - strand, within Psyr_0306at 327.080 kb on + strand, within Psyr_0306at 327.099 kb on + strand, within Psyr_0306at 327.100 kb on - strand, within Psyr_0306at 327.100 kb on - strandat 327.243 kb on + strandat 327.243 kb on + strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.244 kb on - strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.325 kb on + strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.326 kb on - strandat 327.354 kb on + strandat 327.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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324,055 + -1.5
324,055 + +1.3
324,056 - -1.9
324,056 - -1.6
324,116 + +0.9
324,116 + -0.0
324,117 - -0.7
324,172 + -0.0
324,173 - +0.2
324,190 + +0.1
324,190 + +0.0
324,191 - -0.2
324,191 - +0.5
324,230 + +1.8
324,231 - +1.1
324,231 - -0.3
324,231 - +0.1
324,231 - -0.6
324,231 - +0.1
324,515 + Psyr_0304 0.25 +0.2
324,596 + Psyr_0304 0.37 -0.5
324,597 - Psyr_0304 0.37 -0.4
324,645 + Psyr_0304 0.44 -1.3
324,804 + Psyr_0304 0.68 +0.1
324,805 - Psyr_0304 0.68 -0.5
324,845 + Psyr_0304 0.74 +0.1
324,846 - Psyr_0304 0.74 -0.8
324,846 - Psyr_0304 0.74 +0.3
324,846 - Psyr_0304 0.74 +1.6
324,846 - Psyr_0304 0.74 -1.1
325,192 - Psyr_0305 0.13 +0.2
325,285 - Psyr_0305 0.20 -0.0
325,285 - Psyr_0305 0.20 -0.6
325,285 - Psyr_0305 0.20 -0.5
325,285 - Psyr_0305 0.20 -0.6
325,353 + Psyr_0305 0.25 -0.9
325,353 + Psyr_0305 0.25 -0.0
325,354 - Psyr_0305 0.25 -1.4
325,354 - Psyr_0305 0.25 -0.7
325,485 + Psyr_0305 0.35 -0.6
325,485 + Psyr_0305 0.35 -0.0
325,486 - Psyr_0305 0.35 -0.9
325,486 - Psyr_0305 0.35 -0.5
325,534 - Psyr_0305 0.38 -0.8
325,572 + Psyr_0305 0.41 -0.0
325,572 + Psyr_0305 0.41 -0.1
325,573 - Psyr_0305 0.41 -0.5
325,599 + Psyr_0305 0.43 -1.2
325,599 + Psyr_0305 0.43 -0.5
325,599 + Psyr_0305 0.43 -0.4
325,599 + Psyr_0305 0.43 +0.5
325,600 - Psyr_0305 0.43 +1.3
325,600 - Psyr_0305 0.43 -0.6
325,626 + Psyr_0305 0.45 -1.0
325,626 + Psyr_0305 0.45 +0.1
325,626 + Psyr_0305 0.45 -0.2
325,626 + Psyr_0305 0.45 -2.9
325,627 - Psyr_0305 0.45 +1.5
325,627 - Psyr_0305 0.45 +0.6
325,627 - Psyr_0305 0.45 +2.3
325,627 - Psyr_0305 0.45 -0.4
325,627 - Psyr_0305 0.45 -0.7
325,627 - Psyr_0305 0.45 +0.2
325,678 - Psyr_0305 0.49 +1.0
325,701 + Psyr_0305 0.51 +0.1
325,701 + Psyr_0305 0.51 -1.4
325,702 - Psyr_0305 0.51 -0.1
325,702 - Psyr_0305 0.51 -1.1
325,702 - Psyr_0305 0.51 -1.0
325,702 - Psyr_0305 0.51 -1.0
325,797 + Psyr_0305 0.58 -0.9
325,797 + Psyr_0305 0.58 -2.7
325,797 + Psyr_0305 0.58 -0.4
325,797 + Psyr_0305 0.58 +1.3
325,798 - Psyr_0305 0.58 +1.1
325,798 - Psyr_0305 0.58 +0.9
325,798 - Psyr_0305 0.58 +0.6
325,798 - Psyr_0305 0.58 -0.2
326,088 + Psyr_0305 0.79 -1.1
326,089 - Psyr_0305 0.79 +1.3
326,188 + Psyr_0305 0.87 -1.9
326,189 - Psyr_0305 0.87 +2.9
326,189 - Psyr_0305 0.87 -3.1
326,189 - Psyr_0305 0.87 -0.6
326,190 + Psyr_0305 0.87 -0.6
326,208 + Psyr_0305 0.88 +0.4
326,209 - Psyr_0305 0.88 -0.4
326,209 - Psyr_0305 0.88 -1.8
326,244 + +2.0
326,244 + +0.7
326,245 - +1.9
326,245 - +0.3
326,245 - +0.8
326,245 - +1.5
326,302 - +1.1
326,384 + -0.7
326,385 - -0.8
326,385 - -0.6
326,459 - -0.2
326,523 + -0.4
326,539 + -0.3
326,539 + -0.7
326,587 + -1.4
326,587 + +2.1
326,588 - -1.5
326,636 + +0.2
326,636 + +0.3
326,637 - -1.6
326,637 - +2.5
326,637 - -0.1
326,721 + Psyr_0306 0.12 -0.9
326,721 + Psyr_0306 0.12 -0.8
326,721 + Psyr_0306 0.12 +0.2
326,721 + Psyr_0306 0.12 -0.5
326,722 - Psyr_0306 0.12 +0.1
326,722 - Psyr_0306 0.12 -0.0
326,722 - Psyr_0306 0.12 -0.5
326,722 - Psyr_0306 0.12 -0.7
326,722 - Psyr_0306 0.12 +0.3
326,892 + Psyr_0306 0.37 +0.6
326,894 + Psyr_0306 0.38 -0.4
326,894 + Psyr_0306 0.38 +0.6
326,894 + Psyr_0306 0.38 +0.8
326,894 + Psyr_0306 0.38 -0.8
326,894 + Psyr_0306 0.38 -0.3
326,895 - Psyr_0306 0.38 +0.7
326,895 - Psyr_0306 0.38 -0.4
327,080 + Psyr_0306 0.66 +1.5
327,099 + Psyr_0306 0.68 -0.9
327,100 - Psyr_0306 0.69 -1.3
327,100 - -0.0
327,243 + -0.2
327,243 + +2.1
327,244 - -0.5
327,244 - -0.5
327,244 - +0.5
327,244 - +0.9
327,244 - +0.2
327,325 + +0.4
327,325 + -0.4
327,325 + +1.8
327,325 + +1.3
327,325 + -0.8
327,325 + +0.4
327,326 - -0.7
327,326 - -0.0
327,326 - +0.9
327,326 - +0.1
327,326 - -2.3
327,326 - +3.1
327,326 - -2.1
327,354 + +0.3
327,355 - +0.0

Or see this region's nucleotide sequence