Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2692

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2691 and Psyr_2692 overlap by 1 nucleotidesPsyr_2692 and Psyr_2693 overlap by 4 nucleotides Psyr_2691: Psyr_2691 - Formyl transferase, N-terminal:Formyl transferase, C-terminal, at 3,267,178 to 3,269,172 _2691 Psyr_2692: Psyr_2692 - Polysaccharide deacetylase, at 3,269,172 to 3,270,053 _2692 Psyr_2693: Psyr_2693 - Glycosyl transferase, family 39, at 3,270,050 to 3,271,702 _2693 Position (kb) 3269 3270 3271Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3268.381 kb on + strand, within Psyr_2691at 3268.456 kb on + strand, within Psyr_2691at 3268.456 kb on + strand, within Psyr_2691at 3268.456 kb on + strand, within Psyr_2691at 3268.457 kb on - strand, within Psyr_2691at 3268.457 kb on - strand, within Psyr_2691at 3268.457 kb on - strand, within Psyr_2691at 3268.495 kb on + strand, within Psyr_2691at 3268.577 kb on - strand, within Psyr_2691at 3268.619 kb on - strand, within Psyr_2691at 3269.011 kb on + strandat 3269.012 kb on - strandat 3269.205 kb on + strandat 3269.245 kb on + strandat 3269.245 kb on + strandat 3269.245 kb on + strandat 3269.245 kb on + strandat 3269.246 kb on - strandat 3269.246 kb on - strandat 3269.246 kb on - strandat 3269.557 kb on + strand, within Psyr_2692at 3269.558 kb on - strand, within Psyr_2692at 3269.558 kb on - strand, within Psyr_2692at 3269.676 kb on + strand, within Psyr_2692at 3269.677 kb on - strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.818 kb on - strand, within Psyr_2692at 3269.856 kb on + strand, within Psyr_2692at 3269.914 kb on + strand, within Psyr_2692at 3270.054 kb on + strandat 3270.055 kb on - strandat 3270.055 kb on - strandat 3270.107 kb on + strandat 3270.108 kb on - strandat 3270.108 kb on - strandat 3270.108 kb on - strandat 3270.108 kb on - strandat 3270.228 kb on - strand, within Psyr_2693at 3270.350 kb on + strand, within Psyr_2693at 3270.350 kb on + strand, within Psyr_2693at 3270.632 kb on + strand, within Psyr_2693at 3270.632 kb on + strand, within Psyr_2693at 3270.759 kb on - strand, within Psyr_2693at 3270.779 kb on - strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.832 kb on + strand, within Psyr_2693at 3270.832 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3271.000 kb on - strand, within Psyr_2693

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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3,268,381 + Psyr_2691 0.60 +0.3
3,268,456 + Psyr_2691 0.64 -0.7
3,268,456 + Psyr_2691 0.64 -1.1
3,268,456 + Psyr_2691 0.64 +1.7
3,268,457 - Psyr_2691 0.64 -2.6
3,268,457 - Psyr_2691 0.64 -0.5
3,268,457 - Psyr_2691 0.64 -0.9
3,268,495 + Psyr_2691 0.66 -1.2
3,268,577 - Psyr_2691 0.70 -0.1
3,268,619 - Psyr_2691 0.72 -1.5
3,269,011 + -0.4
3,269,012 - +1.1
3,269,205 + +0.5
3,269,245 + -0.7
3,269,245 + +0.2
3,269,245 + -0.8
3,269,245 + -0.1
3,269,246 - -0.5
3,269,246 - +0.1
3,269,246 - -1.7
3,269,557 + Psyr_2692 0.44 +1.1
3,269,558 - Psyr_2692 0.44 -0.8
3,269,558 - Psyr_2692 0.44 -3.0
3,269,676 + Psyr_2692 0.57 -0.2
3,269,677 - Psyr_2692 0.57 +3.4
3,269,817 + Psyr_2692 0.73 -1.7
3,269,817 + Psyr_2692 0.73 -0.0
3,269,817 + Psyr_2692 0.73 +1.1
3,269,817 + Psyr_2692 0.73 +0.9
3,269,817 + Psyr_2692 0.73 +0.8
3,269,818 - Psyr_2692 0.73 -1.4
3,269,856 + Psyr_2692 0.78 +0.3
3,269,914 + Psyr_2692 0.84 +1.0
3,270,054 + +0.5
3,270,055 - +2.1
3,270,055 - +0.4
3,270,107 + +0.1
3,270,108 - +0.1
3,270,108 - +0.3
3,270,108 - +0.1
3,270,108 - +1.0
3,270,228 - Psyr_2693 0.11 +1.5
3,270,350 + Psyr_2693 0.18 +0.4
3,270,350 + Psyr_2693 0.18 +0.6
3,270,632 + Psyr_2693 0.35 -2.2
3,270,632 + Psyr_2693 0.35 -0.7
3,270,759 - Psyr_2693 0.43 +1.9
3,270,779 - Psyr_2693 0.44 -1.1
3,270,830 + Psyr_2693 0.47 +0.3
3,270,830 + Psyr_2693 0.47 +1.2
3,270,830 + Psyr_2693 0.47 -0.5
3,270,830 + Psyr_2693 0.47 -1.5
3,270,830 + Psyr_2693 0.47 +0.6
3,270,830 + Psyr_2693 0.47 -0.9
3,270,830 + Psyr_2693 0.47 -0.2
3,270,831 - Psyr_2693 0.47 -0.5
3,270,831 - Psyr_2693 0.47 +1.3
3,270,831 - Psyr_2693 0.47 -1.1
3,270,831 - Psyr_2693 0.47 -1.0
3,270,831 - Psyr_2693 0.47 +1.8
3,270,831 - Psyr_2693 0.47 +2.1
3,270,831 - Psyr_2693 0.47 -0.0
3,270,831 - Psyr_2693 0.47 +3.7
3,270,832 + Psyr_2693 0.47 -0.8
3,270,832 + Psyr_2693 0.47 +0.1
3,270,995 + Psyr_2693 0.57 +0.5
3,270,995 + Psyr_2693 0.57 -0.7
3,270,995 + Psyr_2693 0.57 +0.2
3,270,995 + Psyr_2693 0.57 +1.7
3,270,995 + Psyr_2693 0.57 +0.1
3,270,995 + Psyr_2693 0.57 -0.5
3,270,995 + Psyr_2693 0.57 -0.9
3,270,995 + Psyr_2693 0.57 -1.1
3,270,995 + Psyr_2693 0.57 +0.7
3,270,995 + Psyr_2693 0.57 +1.0
3,270,996 - Psyr_2693 0.57 +1.2
3,270,996 - Psyr_2693 0.57 -0.5
3,270,996 - Psyr_2693 0.57 -0.4
3,270,996 - Psyr_2693 0.57 -0.9
3,270,996 - Psyr_2693 0.57 +0.1
3,270,996 - Psyr_2693 0.57 +2.7
3,270,996 - Psyr_2693 0.57 -0.5
3,270,996 - Psyr_2693 0.57 -0.9
3,270,999 + Psyr_2693 0.57 -0.5
3,270,999 + Psyr_2693 0.57 -0.0
3,270,999 + Psyr_2693 0.57 -0.6
3,270,999 + Psyr_2693 0.57 -0.7
3,271,000 - Psyr_2693 0.57 -1.7

Or see this region's nucleotide sequence