Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23460 and LU632_RS23465 are separated by 78 nucleotides LU632_RS23465 and LU632_RS23470 are separated by 202 nucleotides LU632_RS23470 and LU632_RS23475 are separated by 133 nucleotides LU632_RS23475 and LU632_RS23480 are separated by 289 nucleotides
LU632_RS23460: LU632_RS23460 - glycoside hydrolase family 6 protein, at 4,477,417 to 4,478,805
_RS23460
LU632_RS23465: LU632_RS23465 - hypothetical protein, at 4,478,884 to 4,479,051
_RS23465
LU632_RS23470: LU632_RS23470 - IS5/IS1182 family transposase, at 4,479,254 to 4,479,445
_RS23470
LU632_RS23475: LU632_RS23475 - hypothetical protein, at 4,479,579 to 4,479,809
_RS23475
LU632_RS23480: LU632_RS23480 - IS91 family transposase, at 4,480,099 to 4,481,298
_RS23480
Position (kb) 4479
4480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4478.580 kb on + strand, within LU632_RS23460 at 4478.581 kb on - strand, within LU632_RS23460 at 4478.582 kb on + strand, within LU632_RS23460 at 4478.582 kb on + strand, within LU632_RS23460 at 4478.602 kb on - strand, within LU632_RS23460 at 4478.628 kb on + strand, within LU632_RS23460 at 4478.629 kb on - strand, within LU632_RS23460 at 4478.687 kb on - strand at 4478.688 kb on + strand at 4478.885 kb on + strand at 4478.885 kb on + strand at 4478.885 kb on + strand at 4478.886 kb on - strand at 4478.886 kb on - strand at 4479.622 kb on + strand, within LU632_RS23475 at 4479.623 kb on - strand, within LU632_RS23475 at 4479.646 kb on + strand, within LU632_RS23475
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 4,478,580 + LU632_RS23460 0.84 +0.6 4,478,581 - LU632_RS23460 0.84 +1.0 4,478,582 + LU632_RS23460 0.84 -0.2 4,478,582 + LU632_RS23460 0.84 -0.9 4,478,602 - LU632_RS23460 0.85 -0.3 4,478,628 + LU632_RS23460 0.87 -0.3 4,478,629 - LU632_RS23460 0.87 +0.3 4,478,687 - -1.1 4,478,688 + +1.9 4,478,885 + -0.2 4,478,885 + +0.2 4,478,885 + +0.5 4,478,886 - -2.3 4,478,886 - +1.0 4,479,622 + LU632_RS23475 0.19 -0.6 4,479,623 - LU632_RS23475 0.19 -0.3 4,479,646 + LU632_RS23475 0.29 -0.5
Or see this region's nucleotide sequence