Experiment: McCas_formate_complete Nitrofurantoin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01465 and MMJJ_RS01470 are separated by 118 nucleotides MMJJ_RS01470 and MMJJ_RS01475 are separated by 163 nucleotides
MMJJ_RS01465: MMJJ_RS01465 - METTL5 family protein, at 286,896 to 287,537
_RS01465
MMJJ_RS01470: MMJJ_RS01470 - Hsp20/alpha crystallin family protein, at 287,656 to 288,120
_RS01470
MMJJ_RS01475: MMJJ_RS01475 - signal recognition particle-docking protein FtsY, at 288,284 to 289,435
_RS01475
Position (kb) 287
288
289 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 286.783 kb on - strand at 286.837 kb on - strand at 286.840 kb on + strand at 286.842 kb on + strand at 286.914 kb on + strand at 286.987 kb on + strand, within MMJJ_RS01465 at 286.987 kb on + strand, within MMJJ_RS01465 at 286.989 kb on + strand, within MMJJ_RS01465 at 286.989 kb on + strand at 287.020 kb on - strand, within MMJJ_RS01465 at 287.020 kb on - strand, within MMJJ_RS01465 at 287.021 kb on + strand, within MMJJ_RS01465 at 287.021 kb on + strand, within MMJJ_RS01465 at 287.021 kb on + strand, within MMJJ_RS01465 at 287.055 kb on - strand, within MMJJ_RS01465 at 287.060 kb on - strand, within MMJJ_RS01465 at 287.169 kb on + strand, within MMJJ_RS01465 at 287.214 kb on + strand, within MMJJ_RS01465 at 287.260 kb on + strand, within MMJJ_RS01465 at 287.260 kb on + strand, within MMJJ_RS01465 at 287.359 kb on + strand, within MMJJ_RS01465 at 287.360 kb on - strand, within MMJJ_RS01465 at 287.361 kb on + strand, within MMJJ_RS01465 at 287.382 kb on - strand, within MMJJ_RS01465 at 287.408 kb on - strand, within MMJJ_RS01465 at 287.538 kb on - strand at 287.554 kb on + strand at 287.559 kb on - strand at 287.570 kb on - strand at 287.577 kb on + strand at 287.577 kb on + strand at 287.582 kb on - strand at 287.616 kb on - strand at 287.616 kb on - strand at 287.617 kb on + strand at 287.617 kb on + strand at 287.621 kb on + strand at 287.633 kb on - strand at 287.634 kb on + strand at 287.639 kb on - strand at 287.657 kb on - strand at 287.658 kb on + strand at 287.662 kb on - strand at 287.683 kb on + strand at 287.707 kb on - strand, within MMJJ_RS01470 at 287.775 kb on - strand, within MMJJ_RS01470 at 287.838 kb on - strand, within MMJJ_RS01470 at 287.894 kb on + strand, within MMJJ_RS01470 at 287.924 kb on + strand, within MMJJ_RS01470 at 287.968 kb on + strand, within MMJJ_RS01470 at 287.988 kb on - strand, within MMJJ_RS01470 at 287.989 kb on + strand, within MMJJ_RS01470 at 288.055 kb on + strand, within MMJJ_RS01470 at 288.201 kb on - strand at 288.202 kb on + strand at 288.202 kb on + strand at 288.202 kb on + strand at 288.206 kb on - strand at 288.210 kb on - strand at 288.216 kb on - strand at 288.217 kb on + strand at 288.219 kb on - strand at 288.219 kb on - strand at 288.219 kb on - strand at 288.220 kb on + strand at 288.220 kb on + strand at 288.221 kb on - strand at 288.221 kb on - strand at 288.221 kb on - strand at 288.222 kb on + strand at 288.222 kb on + strand at 288.222 kb on + strand at 288.226 kb on + strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.238 kb on - strand at 288.240 kb on - strand at 288.241 kb on + strand at 288.747 kb on - strand, within MMJJ_RS01475 at 288.835 kb on + strand at 288.862 kb on + strand, within MMJJ_RS01475 at 289.079 kb on + strand, within MMJJ_RS01475 at 289.096 kb on - strand, within MMJJ_RS01475
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Nitrofurantoin 0.025 mM remove 286,783 - -0.3 286,837 - +1.3 286,840 + -0.3 286,842 + -1.8 286,914 + +4.1 286,987 + MMJJ_RS01465 0.14 -2.5 286,987 + MMJJ_RS01465 0.14 -2.1 286,989 + MMJJ_RS01465 0.14 +1.5 286,989 + +2.3 287,020 - MMJJ_RS01465 0.19 -1.4 287,020 - MMJJ_RS01465 0.19 -2.0 287,021 + MMJJ_RS01465 0.19 -1.2 287,021 + MMJJ_RS01465 0.19 -1.2 287,021 + MMJJ_RS01465 0.19 -1.3 287,055 - MMJJ_RS01465 0.25 -1.9 287,060 - MMJJ_RS01465 0.26 -2.3 287,169 + MMJJ_RS01465 0.43 -2.6 287,214 + MMJJ_RS01465 0.50 -2.8 287,260 + MMJJ_RS01465 0.57 +1.0 287,260 + MMJJ_RS01465 0.57 -3.3 287,359 + MMJJ_RS01465 0.72 -0.4 287,360 - MMJJ_RS01465 0.72 +2.1 287,361 + MMJJ_RS01465 0.72 +0.5 287,382 - MMJJ_RS01465 0.76 +2.4 287,408 - MMJJ_RS01465 0.80 +0.3 287,538 - -3.0 287,554 + +1.3 287,559 - +3.4 287,570 - +3.1 287,577 + -1.0 287,577 + -1.3 287,582 - +3.6 287,616 - -3.1 287,616 - -2.3 287,617 + +0.1 287,617 + +1.3 287,621 + +0.3 287,633 - +1.0 287,634 + +2.4 287,639 - +1.0 287,657 - +0.7 287,658 + +3.7 287,662 - -1.7 287,683 + -2.5 287,707 - MMJJ_RS01470 0.11 -1.3 287,775 - MMJJ_RS01470 0.26 -2.1 287,838 - MMJJ_RS01470 0.39 +0.2 287,894 + MMJJ_RS01470 0.51 +1.1 287,924 + MMJJ_RS01470 0.58 -1.9 287,968 + MMJJ_RS01470 0.67 +1.6 287,988 - MMJJ_RS01470 0.71 -2.0 287,989 + MMJJ_RS01470 0.72 -2.4 288,055 + MMJJ_RS01470 0.86 -0.3 288,201 - +1.7 288,202 + +2.2 288,202 + -4.0 288,202 + +2.1 288,206 - +3.4 288,210 - -2.4 288,216 - -1.1 288,217 + -1.0 288,219 - -2.9 288,219 - -0.5 288,219 - +1.4 288,220 + +2.5 288,220 + +1.9 288,221 - -3.1 288,221 - +0.6 288,221 - -0.3 288,222 + -3.1 288,222 + +1.3 288,222 + +0.2 288,226 + +1.6 288,238 - +1.4 288,238 - +1.1 288,238 - -3.8 288,238 - +0.5 288,238 - +2.9 288,240 - +3.3 288,241 + +1.0 288,747 - MMJJ_RS01475 0.40 -2.4 288,835 + +0.3 288,862 + MMJJ_RS01475 0.50 +0.3 289,079 + MMJJ_RS01475 0.69 +0.3 289,096 - MMJJ_RS01475 0.70 +2.3
Or see this region's nucleotide sequence