Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06190

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,147,394	+				-0.5
1,147,405	+				-0.1
1,147,441	-				+1.1
1,147,441	-				+0.5
1,147,461	-				+0.5
1,147,490	+		MMJJ_RS06185	0.10	-0.1
1,147,505	+		MMJJ_RS06185	0.12	+0.5
1,147,532	-		MMJJ_RS06185	0.15	-2.0
1,147,535	+		MMJJ_RS06185	0.15	+2.1
1,147,563	-		MMJJ_RS06185	0.18	+0.4
1,147,591	-		MMJJ_RS06185	0.21	-1.5
1,147,636	-		MMJJ_RS06185	0.25	+0.7
1,147,636	-		MMJJ_RS06185	0.25	-0.3
1,147,687	-		MMJJ_RS06185	0.31	-1.1
1,147,739	-		MMJJ_RS06185	0.36	+0.5
1,147,817	+		MMJJ_RS06185	0.44	-0.1
1,147,829	+		MMJJ_RS06185	0.45	+2.5
1,148,080	-		MMJJ_RS06185	0.71	-0.8
1,148,165	+				+1.5
1,148,175	-		MMJJ_RS06185	0.81	+1.5
1,148,192	+		MMJJ_RS06185	0.83	-1.7
1,148,195	-				+2.5
1,148,195	-		MMJJ_RS06185	0.83	-0.5
1,148,358	-				+0.5
1,148,359	+				-3.3
1,148,359	+				+1.9
1,148,362	-				-0.6
1,148,363	+				-2.0
1,148,373	-				+0.5
1,148,374	+				+1.5
1,148,374	+				+3.7
1,148,382	-				-0.3
1,148,382	-				-1.3
1,148,382	-				-2.6
1,148,382	-				+3.0
1,148,382	-				+1.3
1,148,382	-				-0.5
1,148,383	+				-0.3
1,148,383	+				-0.7
1,148,383	+				-0.5
1,148,384	-				-1.3
1,148,385	+				-0.5
1,148,408	-				-2.0
1,148,409	+				-1.9
1,148,412	-				+1.9
1,148,424	-				+3.3
1,148,514	-		MMJJ_RS06190	0.19	+1.1
1,148,516	-		MMJJ_RS06190	0.20	-2.1
1,148,520	+		MMJJ_RS06190	0.20	+2.1
1,148,569	+		MMJJ_RS06190	0.26	-0.7
1,148,643	+		MMJJ_RS06190	0.36	+2.9
1,148,653	+		MMJJ_RS06190	0.37	+3.2
1,148,653	+		MMJJ_RS06190	0.37	+0.9
1,148,659	-		MMJJ_RS06190	0.38	-1.5
1,148,664	-		MMJJ_RS06190	0.39	+1.9
1,148,667	+		MMJJ_RS06190	0.39	+2.3
1,148,734	-		MMJJ_RS06190	0.47	-0.3
1,148,751	+		MMJJ_RS06190	0.50	-0.8
1,148,751	+		MMJJ_RS06190	0.50	+0.6
1,148,769	-		MMJJ_RS06190	0.52	-0.4
1,148,770	+		MMJJ_RS06190	0.52	+0.5
1,148,783	-		MMJJ_RS06190	0.54	-1.9
1,148,784	+		MMJJ_RS06190	0.54	+3.1
1,148,802	-		MMJJ_RS06190	0.56	-2.4
1,148,802	-		MMJJ_RS06190	0.56	-0.1
1,148,803	+		MMJJ_RS06190	0.56	-2.7
1,148,813	-		MMJJ_RS06190	0.58	+2.1
1,148,814	+				-0.1
1,148,814	+		MMJJ_RS06190	0.58	+2.3
1,148,814	+		MMJJ_RS06190	0.58	-1.5
1,148,850	-		MMJJ_RS06190	0.62	+3.1
1,148,850	-		MMJJ_RS06190	0.62	-2.0
1,148,850	-		MMJJ_RS06190	0.62	+1.4
1,148,852	-		MMJJ_RS06190	0.62	-0.7
1,148,852	-		MMJJ_RS06190	0.62	+3.9
1,148,853	+		MMJJ_RS06190	0.63	-1.2
1,148,853	+		MMJJ_RS06190	0.63	+0.9
1,148,853	+		MMJJ_RS06190	0.63	+2.2
1,148,853	+		MMJJ_RS06190	0.63	-2.4
1,148,854	-		MMJJ_RS06190	0.63	+3.2
1,148,854	-		MMJJ_RS06190	0.63	-2.3
1,148,854	-		MMJJ_RS06190	0.63	+3.7
1,148,854	-		MMJJ_RS06190	0.63	+0.4
1,148,855	+		MMJJ_RS06190	0.63	-1.0
1,148,855	+		MMJJ_RS06190	0.63	+1.0
1,148,855	+		MMJJ_RS06190	0.63	-1.5
1,148,855	+		MMJJ_RS06190	0.63	+0.3
1,148,858	-		MMJJ_RS06190	0.63	-0.8
1,148,858	-		MMJJ_RS06190	0.63	+0.3
1,148,871	+		MMJJ_RS06190	0.65	+1.4
1,148,871	+		MMJJ_RS06190	0.65	-2.6
1,148,874	-		MMJJ_RS06190	0.65	+2.4
1,148,907	-		MMJJ_RS06190	0.69	-3.0
1,148,907	-		MMJJ_RS06190	0.69	+0.6
1,148,908	+		MMJJ_RS06190	0.70	+3.1
1,148,915	-		MMJJ_RS06190	0.70	-0.5
1,148,916	+		MMJJ_RS06190	0.71	+0.1
1,148,919	+		MMJJ_RS06190	0.71	+0.2
1,148,921	-		MMJJ_RS06190	0.71	-2.8
1,148,921	-		MMJJ_RS06190	0.71	-1.9
1,148,921	-		MMJJ_RS06190	0.71	+0.9
1,148,925	-		MMJJ_RS06190	0.72	+1.2
1,148,925	-		MMJJ_RS06190	0.72	+1.2
1,148,926	+		MMJJ_RS06190	0.72	-1.0
1,148,979	-		MMJJ_RS06190	0.79	+3.3
1,148,980	+		MMJJ_RS06190	0.79	+0.9
1,148,992	+		MMJJ_RS06190	0.80	-1.1
1,149,085	-				-2.7
1,149,085	-				+2.8
1,149,086	+				+3.4
1,149,087	-				-0.3
1,149,087	-				+0.1
1,149,087	-				+1.3
1,149,088	+				+3.0
1,149,088	+				+3.0
1,149,088	+				-0.1
1,149,088	+				-0.4
1,149,088	+				-1.3
1,149,090	-				-1.6
1,149,090	-				+1.1
1,149,090	-				+0.7
1,149,090	-				+1.7
1,149,090	-				+2.2
1,149,090	-				-1.9
1,149,091	+				+1.2
1,149,091	+				-0.2
1,149,125	-				+0.8
1,149,131	-				-1.5
1,149,140	-				-0.1
1,149,170	-				+0.5
1,149,181	-				+1.4
1,149,182	+				-0.7
1,149,185	-				-0.5
1,149,192	+				-0.1
1,149,212	-				+1.5
1,149,212	-				+0.5
1,149,212	-				-1.9
1,149,212	-				+2.6
1,149,213	+				+1.4
1,149,215	-				+3.7
1,149,215	-				+0.7
1,149,216	+				+2.0
1,149,216	+				+3.3
1,149,218	+				-1.5
1,149,251	+				+0.9
1,149,906	+		MMJJ_RS06195	0.61	-0.5