Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05400

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,002,092	-		MMJJ_RS05395	0.34	-0.9
1,003,071	-				+0.8
1,003,103	-				-1.8
1,003,103	-				-1.5
1,003,202	-		MMJJ_RS05400	0.26	+2.9
1,003,203	+		MMJJ_RS05400	0.27	-1.2
1,003,203	+		MMJJ_RS05400	0.27	+2.2
1,003,254	-		MMJJ_RS05400	0.38	+4.3
1,003,308	-		MMJJ_RS05400	0.50	-0.6
1,003,309	+		MMJJ_RS05400	0.50	+0.6
1,003,309	+		MMJJ_RS05400	0.50	+4.3
1,003,309	+		MMJJ_RS05400	0.50	-0.8
1,003,321	+		MMJJ_RS05400	0.53	+1.8
1,003,365	+		MMJJ_RS05400	0.63	+3.2
1,003,399	-		MMJJ_RS05400	0.70	+3.9
1,003,399	-		MMJJ_RS05400	0.70	-1.1
1,003,515	+				-1.2
1,003,534	-				+3.7
1,003,534	-				-1.6
1,003,534	-				+0.7
1,003,534	-				+2.9
1,003,534	-				-0.5
1,003,534	-				-1.4
1,003,535	+				+2.3
1,003,535	+				+0.3
1,003,545	-				+1.0
1,003,546	+				-0.5
1,003,546	+				+0.8
1,003,546	+				+0.5
1,003,553	-				+2.5
1,003,554	+				+1.4
1,003,554	+				+2.9
1,003,557	-				+1.0
1,003,557	-				-0.9
1,003,567	-				-0.7
1,003,568	+				+1.1
1,003,568	+				-2.2
1,003,568	+				+1.1
1,003,568	+				+0.8
1,003,568	+				-1.9
1,003,568	+				-2.5
1,003,569	-				+1.4
1,003,569	-				+1.1
1,003,569	-				-2.2
1,003,570	+				+1.1
1,003,570	+				-0.1
1,003,586	+				+0.8
1,003,591	-				+1.3
1,003,613	+				-0.5
1,003,721	+		MMJJ_RS05405	0.11	-0.9
1,003,726	+		MMJJ_RS05405	0.12	-3.0
1,003,727	-		MMJJ_RS05405	0.12	-1.9
1,003,727	-		MMJJ_RS05405	0.12	-2.4
1,003,728	+		MMJJ_RS05405	0.12	+0.6
1,003,761	+		MMJJ_RS05405	0.15	+0.3
1,003,814	-		MMJJ_RS05405	0.20	-2.1
1,003,838	-		MMJJ_RS05405	0.22	+1.3
1,003,864	-		MMJJ_RS05405	0.25	-3.2
1,003,868	-		MMJJ_RS05405	0.25	+1.3
1,003,868	-		MMJJ_RS05405	0.25	+1.6
1,003,869	+		MMJJ_RS05405	0.25	+0.2
1,003,879	-		MMJJ_RS05405	0.26	+3.8
1,003,916	-		MMJJ_RS05405	0.29	-0.4
1,003,922	-		MMJJ_RS05405	0.30	+0.8
1,003,923	+		MMJJ_RS05405	0.30	+1.1
1,003,930	+		MMJJ_RS05405	0.31	+1.6
1,003,952	+		MMJJ_RS05405	0.33	-1.6
1,003,974	-		MMJJ_RS05405	0.35	+1.6
1,003,975	+		MMJJ_RS05405	0.35	-1.6
1,004,012	-		MMJJ_RS05405	0.38	-0.7
1,004,013	+		MMJJ_RS05405	0.38	+2.6
1,004,051	+		MMJJ_RS05405	0.42	+0.8
1,004,055	-		MMJJ_RS05405	0.42	+2.9
1,004,055	-		MMJJ_RS05405	0.42	-1.0
1,004,056	+		MMJJ_RS05405	0.43	-1.1
1,004,057	-		MMJJ_RS05405	0.43	+0.1
1,004,060	-		MMJJ_RS05405	0.43	-1.4
1,004,061	+		MMJJ_RS05405	0.43	-0.1
1,004,075	-		MMJJ_RS05405	0.44	+1.8
1,004,076	+		MMJJ_RS05405	0.44	-1.6
1,004,076	+		MMJJ_RS05405	0.44	-1.7
1,004,095	-		MMJJ_RS05405	0.46	-1.0
1,004,133	+		MMJJ_RS05405	0.50	+0.3
1,004,133	+		MMJJ_RS05405	0.50	+2.5
1,004,142	+		MMJJ_RS05405	0.51	-2.0
1,004,181	-		MMJJ_RS05405	0.54	-3.9
1,004,240	-		MMJJ_RS05405	0.60	-2.6
1,004,276	-		MMJJ_RS05405	0.63	-1.2
1,004,288	+		MMJJ_RS05405	0.64	-1.4
1,004,312	-		MMJJ_RS05405	0.66	-0.4
1,004,399	-		MMJJ_RS05405	0.75	+2.0
1,004,425	-		MMJJ_RS05405	0.77	+3.6
1,004,426	+		MMJJ_RS05405	0.77	-1.0
1,004,433	-		MMJJ_RS05405	0.78	+0.4
1,004,433	-		MMJJ_RS05405	0.78	-2.7
1,004,433	-		MMJJ_RS05405	0.78	+1.1
1,004,433	-		MMJJ_RS05405	0.78	+2.6
1,004,434	+		MMJJ_RS05405	0.78	+0.4
1,004,434	+		MMJJ_RS05405	0.78	+0.9
1,004,489	-		MMJJ_RS05405	0.83	+0.2
1,004,489	-		MMJJ_RS05405	0.83	+2.5
1,004,489	-		MMJJ_RS05405	0.83	-1.9
1,004,489	-		MMJJ_RS05405	0.83	-2.0
1,004,516	+		MMJJ_RS05405	0.86	+1.0