Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03680 and MMJJ_RS03685 are separated by 367 nucleotides MMJJ_RS03685 and MMJJ_RS03690 overlap by 4 nucleotides MMJJ_RS03690 and MMJJ_RS03695 overlap by 8 nucleotides
MMJJ_RS03680: MMJJ_RS03680 - fructose-1,6-bisphosphatase, at 687,541 to 688,692
_RS03680
MMJJ_RS03685: MMJJ_RS03685 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 689,060 to 690,898
_RS03685
MMJJ_RS03690: MMJJ_RS03690 - indolepyruvate oxidoreductase subunit beta, at 690,895 to 691,494
_RS03690
MMJJ_RS03695: MMJJ_RS03695 - phenylacetate--CoA ligase, at 691,487 to 692,731
_RS03695
Position (kb) 689
690
691 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 688.222 kb on - strand, within MMJJ_RS03680 at 688.262 kb on - strand at 688.731 kb on - strand at 688.736 kb on - strand at 688.791 kb on - strand at 688.812 kb on - strand at 688.813 kb on + strand at 688.813 kb on + strand at 688.816 kb on - strand at 688.824 kb on - strand at 688.831 kb on - strand at 688.832 kb on + strand at 688.832 kb on + strand at 688.833 kb on - strand at 688.833 kb on - strand at 688.834 kb on + strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.835 kb on - strand at 688.836 kb on + strand at 688.836 kb on + strand at 688.836 kb on + strand at 688.839 kb on - strand at 688.858 kb on - strand at 688.859 kb on + strand at 688.862 kb on - strand at 688.862 kb on - strand at 688.863 kb on + strand at 688.867 kb on + strand at 688.867 kb on + strand at 688.871 kb on - strand at 688.871 kb on - strand at 688.871 kb on - strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.872 kb on + strand at 688.874 kb on - strand at 688.875 kb on + strand at 688.881 kb on - strand at 688.882 kb on + strand at 688.886 kb on - strand at 688.897 kb on - strand at 688.897 kb on - strand at 688.908 kb on - strand at 688.908 kb on - strand at 688.937 kb on + strand at 688.958 kb on + strand at 688.973 kb on - strand at 688.974 kb on + strand at 688.977 kb on - strand at 688.978 kb on + strand at 688.978 kb on + strand at 688.979 kb on - strand at 688.980 kb on + strand at 688.980 kb on + strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.982 kb on - strand at 688.983 kb on + strand at 688.983 kb on + strand at 688.983 kb on + strand at 688.984 kb on - strand at 688.985 kb on + strand at 688.985 kb on + strand at 688.986 kb on - strand at 688.987 kb on + strand at 689.044 kb on - strand at 689.044 kb on - strand at 689.044 kb on - strand at 689.044 kb on - strand at 689.047 kb on - strand at 689.065 kb on - strand at 689.068 kb on - strand at 689.102 kb on - strand at 689.178 kb on - strand at 689.201 kb on + strand at 689.204 kb on - strand at 689.205 kb on + strand at 689.207 kb on - strand at 689.208 kb on + strand at 689.208 kb on + strand at 689.208 kb on + strand at 689.287 kb on + strand, within MMJJ_RS03685 at 689.290 kb on - strand, within MMJJ_RS03685 at 689.337 kb on - strand, within MMJJ_RS03685 at 689.342 kb on - strand, within MMJJ_RS03685 at 689.343 kb on + strand, within MMJJ_RS03685 at 689.523 kb on + strand, within MMJJ_RS03685 at 689.535 kb on - strand, within MMJJ_RS03685 at 689.548 kb on - strand, within MMJJ_RS03685 at 689.548 kb on - strand, within MMJJ_RS03685 at 689.549 kb on + strand, within MMJJ_RS03685 at 689.549 kb on + strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.580 kb on - strand, within MMJJ_RS03685 at 689.581 kb on + strand, within MMJJ_RS03685 at 689.583 kb on - strand, within MMJJ_RS03685 at 689.583 kb on - strand, within MMJJ_RS03685 at 689.583 kb on - strand, within MMJJ_RS03685 at 689.584 kb on + strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.595 kb on - strand, within MMJJ_RS03685 at 689.596 kb on + strand, within MMJJ_RS03685 at 689.615 kb on + strand, within MMJJ_RS03685 at 689.617 kb on + strand, within MMJJ_RS03685 at 689.617 kb on + strand, within MMJJ_RS03685 at 689.617 kb on + strand, within MMJJ_RS03685 at 689.706 kb on - strand, within MMJJ_RS03685 at 689.787 kb on + strand, within MMJJ_RS03685 at 689.787 kb on + strand, within MMJJ_RS03685 at 689.796 kb on - strand, within MMJJ_RS03685 at 689.914 kb on + strand, within MMJJ_RS03685 at 689.938 kb on + strand, within MMJJ_RS03685 at 689.949 kb on - strand, within MMJJ_RS03685 at 690.036 kb on - strand, within MMJJ_RS03685 at 690.037 kb on + strand, within MMJJ_RS03685 at 690.066 kb on - strand, within MMJJ_RS03685 at 690.078 kb on - strand, within MMJJ_RS03685 at 690.119 kb on + strand, within MMJJ_RS03685 at 690.129 kb on - strand, within MMJJ_RS03685 at 690.191 kb on - strand, within MMJJ_RS03685 at 690.256 kb on - strand, within MMJJ_RS03685 at 690.266 kb on - strand, within MMJJ_RS03685 at 690.267 kb on + strand, within MMJJ_RS03685 at 690.292 kb on + strand, within MMJJ_RS03685 at 690.292 kb on + strand, within MMJJ_RS03685 at 690.304 kb on - strand, within MMJJ_RS03685 at 690.305 kb on + strand, within MMJJ_RS03685 at 690.331 kb on - strand, within MMJJ_RS03685 at 690.332 kb on + strand, within MMJJ_RS03685 at 690.385 kb on - strand, within MMJJ_RS03685 at 690.385 kb on - strand, within MMJJ_RS03685 at 690.426 kb on - strand, within MMJJ_RS03685 at 690.426 kb on - strand, within MMJJ_RS03685 at 690.427 kb on + strand, within MMJJ_RS03685 at 690.430 kb on - strand, within MMJJ_RS03685 at 690.431 kb on + strand, within MMJJ_RS03685 at 690.441 kb on + strand, within MMJJ_RS03685 at 690.457 kb on - strand, within MMJJ_RS03685 at 690.457 kb on - strand, within MMJJ_RS03685 at 690.544 kb on - strand, within MMJJ_RS03685 at 690.545 kb on + strand, within MMJJ_RS03685 at 690.545 kb on + strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.653 kb on + strand, within MMJJ_RS03685 at 690.653 kb on + strand, within MMJJ_RS03685 at 690.659 kb on - strand, within MMJJ_RS03685 at 690.661 kb on - strand, within MMJJ_RS03685 at 690.749 kb on + strand at 690.749 kb on + strand at 690.751 kb on + strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.876 kb on - strand at 690.908 kb on - strand at 690.912 kb on + strand at 690.912 kb on + strand at 690.996 kb on - strand, within MMJJ_RS03690 at 691.040 kb on - strand, within MMJJ_RS03690 at 691.107 kb on + strand, within MMJJ_RS03690 at 691.110 kb on + strand, within MMJJ_RS03690 at 691.222 kb on - strand, within MMJJ_RS03690 at 691.223 kb on + strand, within MMJJ_RS03690 at 691.254 kb on - strand, within MMJJ_RS03690 at 691.255 kb on + strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.259 kb on + strand, within MMJJ_RS03690 at 691.259 kb on + strand, within MMJJ_RS03690 at 691.354 kb on - strand, within MMJJ_RS03690 at 691.379 kb on + strand, within MMJJ_RS03690 at 691.379 kb on + strand, within MMJJ_RS03690 at 691.432 kb on + strand, within MMJJ_RS03690 at 691.492 kb on - strand at 691.495 kb on - strand at 691.511 kb on - strand at 691.590 kb on - strand at 691.591 kb on + strand at 691.656 kb on - strand, within MMJJ_RS03695 at 691.713 kb on - strand, within MMJJ_RS03695 at 691.757 kb on - strand, within MMJJ_RS03695 at 691.758 kb on + strand, within MMJJ_RS03695 at 691.805 kb on - strand, within MMJJ_RS03695 at 691.806 kb on + strand, within MMJJ_RS03695 at 691.834 kb on - strand at 691.835 kb on + strand, within MMJJ_RS03695 at 691.839 kb on - strand, within MMJJ_RS03695 at 691.891 kb on + strand, within MMJJ_RS03695
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 688,222 - MMJJ_RS03680 0.59 -0.9 688,262 - -0.2 688,731 - -0.9 688,736 - -0.6 688,791 - +0.7 688,812 - -0.2 688,813 + +2.0 688,813 + -0.4 688,816 - -2.4 688,824 - +0.6 688,831 - -0.6 688,832 + -1.4 688,832 + +8.6 688,833 - +1.4 688,833 - +1.9 688,834 + +2.8 688,835 - +0.4 688,835 - +2.5 688,835 - -0.4 688,835 - -0.5 688,835 - +3.1 688,835 - -3.4 688,835 - +0.6 688,836 + +0.4 688,836 + +1.1 688,836 + -1.4 688,839 - -1.8 688,858 - -1.0 688,859 + -0.3 688,862 - -2.4 688,862 - -1.9 688,863 + -2.6 688,867 + +1.1 688,867 + +2.2 688,871 - -0.2 688,871 - +0.6 688,871 - -1.9 688,872 + +2.4 688,872 + -1.5 688,872 + -3.7 688,872 + +2.6 688,872 + -0.1 688,874 - -1.1 688,875 + -0.8 688,881 - +1.3 688,882 + -1.2 688,886 - +0.2 688,897 - -0.9 688,897 - +1.6 688,908 - +0.3 688,908 - +2.6 688,937 + -2.3 688,958 + +0.4 688,973 - +0.8 688,974 + +1.0 688,977 - -1.6 688,978 + -0.9 688,978 + -2.5 688,979 - +2.7 688,980 + -1.9 688,980 + -0.8 688,982 - -0.1 688,982 - -2.1 688,982 - +1.8 688,982 - -0.2 688,982 - -0.1 688,983 + -2.2 688,983 + -2.3 688,983 + -1.9 688,984 - -2.4 688,985 + +1.3 688,985 + +2.4 688,986 - +0.8 688,987 + -1.6 689,044 - -0.9 689,044 - -2.4 689,044 - +0.1 689,044 - -1.0 689,047 - -1.1 689,065 - -1.8 689,068 - -2.5 689,102 - -1.4 689,178 - +0.5 689,201 + -1.8 689,204 - -0.5 689,205 + +2.2 689,207 - +0.7 689,208 + +2.8 689,208 + -3.3 689,208 + +0.8 689,287 + MMJJ_RS03685 0.12 -1.2 689,290 - MMJJ_RS03685 0.13 -1.9 689,337 - MMJJ_RS03685 0.15 -1.8 689,342 - MMJJ_RS03685 0.15 +1.6 689,343 + MMJJ_RS03685 0.15 +1.3 689,523 + MMJJ_RS03685 0.25 -0.5 689,535 - MMJJ_RS03685 0.26 -0.9 689,548 - MMJJ_RS03685 0.27 -1.8 689,548 - MMJJ_RS03685 0.27 -2.5 689,549 + MMJJ_RS03685 0.27 +1.9 689,549 + MMJJ_RS03685 0.27 +1.2 689,580 - MMJJ_RS03685 0.28 -2.6 689,580 - MMJJ_RS03685 0.28 +0.5 689,580 - MMJJ_RS03685 0.28 -2.6 689,580 - MMJJ_RS03685 0.28 -0.1 689,581 + MMJJ_RS03685 0.28 -0.7 689,583 - MMJJ_RS03685 0.28 +1.1 689,583 - MMJJ_RS03685 0.28 -1.9 689,583 - MMJJ_RS03685 0.28 +0.2 689,584 + MMJJ_RS03685 0.28 +2.4 689,595 - MMJJ_RS03685 0.29 -2.3 689,595 - MMJJ_RS03685 0.29 -1.0 689,595 - MMJJ_RS03685 0.29 +1.3 689,595 - MMJJ_RS03685 0.29 +1.4 689,596 + MMJJ_RS03685 0.29 +1.5 689,615 + MMJJ_RS03685 0.30 +1.6 689,617 + MMJJ_RS03685 0.30 +0.4 689,617 + MMJJ_RS03685 0.30 -2.6 689,617 + MMJJ_RS03685 0.30 +1.3 689,706 - MMJJ_RS03685 0.35 -0.2 689,787 + MMJJ_RS03685 0.40 +2.4 689,787 + MMJJ_RS03685 0.40 +1.6 689,796 - MMJJ_RS03685 0.40 -0.3 689,914 + MMJJ_RS03685 0.46 -0.9 689,938 + MMJJ_RS03685 0.48 -0.3 689,949 - MMJJ_RS03685 0.48 -1.6 690,036 - MMJJ_RS03685 0.53 +0.6 690,037 + MMJJ_RS03685 0.53 -0.2 690,066 - MMJJ_RS03685 0.55 +2.7 690,078 - MMJJ_RS03685 0.55 +2.2 690,119 + MMJJ_RS03685 0.58 +0.9 690,129 - MMJJ_RS03685 0.58 -0.9 690,191 - MMJJ_RS03685 0.62 +0.3 690,256 - MMJJ_RS03685 0.65 +0.5 690,266 - MMJJ_RS03685 0.66 +0.4 690,267 + MMJJ_RS03685 0.66 +2.0 690,292 + MMJJ_RS03685 0.67 -1.4 690,292 + MMJJ_RS03685 0.67 -0.9 690,304 - MMJJ_RS03685 0.68 -2.2 690,305 + MMJJ_RS03685 0.68 +1.6 690,331 - MMJJ_RS03685 0.69 -1.4 690,332 + MMJJ_RS03685 0.69 +0.2 690,385 - MMJJ_RS03685 0.72 +0.2 690,385 - MMJJ_RS03685 0.72 -2.1 690,426 - MMJJ_RS03685 0.74 -2.4 690,426 - MMJJ_RS03685 0.74 +0.1 690,427 + MMJJ_RS03685 0.74 +1.2 690,430 - MMJJ_RS03685 0.74 +1.7 690,431 + MMJJ_RS03685 0.75 -0.1 690,441 + MMJJ_RS03685 0.75 +1.6 690,457 - MMJJ_RS03685 0.76 +1.9 690,457 - MMJJ_RS03685 0.76 -0.5 690,544 - MMJJ_RS03685 0.81 -1.6 690,545 + MMJJ_RS03685 0.81 -2.3 690,545 + MMJJ_RS03685 0.81 +2.0 690,631 - MMJJ_RS03685 0.85 -1.2 690,631 - MMJJ_RS03685 0.85 +1.8 690,631 - MMJJ_RS03685 0.85 -0.9 690,653 + MMJJ_RS03685 0.87 -1.9 690,653 + MMJJ_RS03685 0.87 -3.0 690,659 - MMJJ_RS03685 0.87 -0.3 690,661 - MMJJ_RS03685 0.87 -0.1 690,749 + +0.9 690,749 + +2.6 690,751 + +0.6 690,796 - -1.8 690,796 - -0.3 690,796 - -0.0 690,796 - +0.4 690,797 + +1.4 690,797 + +1.9 690,797 + -0.6 690,797 + -2.4 690,797 + +1.4 690,797 + -0.2 690,876 - -1.9 690,908 - -0.1 690,912 + -1.2 690,912 + -3.8 690,996 - MMJJ_RS03690 0.17 +3.9 691,040 - MMJJ_RS03690 0.24 +3.5 691,107 + MMJJ_RS03690 0.35 -0.4 691,110 + MMJJ_RS03690 0.36 -0.2 691,222 - MMJJ_RS03690 0.55 +1.4 691,223 + MMJJ_RS03690 0.55 +2.0 691,254 - MMJJ_RS03690 0.60 -2.2 691,255 + MMJJ_RS03690 0.60 +1.3 691,258 - MMJJ_RS03690 0.60 +2.4 691,258 - MMJJ_RS03690 0.60 +1.9 691,258 - MMJJ_RS03690 0.60 -0.6 691,259 + MMJJ_RS03690 0.61 -1.3 691,259 + MMJJ_RS03690 0.61 -0.2 691,354 - MMJJ_RS03690 0.77 -2.5 691,379 + MMJJ_RS03690 0.81 -1.2 691,379 + MMJJ_RS03690 0.81 -0.8 691,432 + MMJJ_RS03690 0.90 +0.4 691,492 - -0.9 691,495 - -0.4 691,511 - -2.6 691,590 - -0.5 691,591 + +2.8 691,656 - MMJJ_RS03695 0.14 -1.5 691,713 - MMJJ_RS03695 0.18 -1.4 691,757 - MMJJ_RS03695 0.22 -0.8 691,758 + MMJJ_RS03695 0.22 -2.9 691,805 - MMJJ_RS03695 0.26 +0.4 691,806 + MMJJ_RS03695 0.26 -2.5 691,834 - +1.4 691,835 + MMJJ_RS03695 0.28 +2.6 691,839 - MMJJ_RS03695 0.28 -0.5 691,891 + MMJJ_RS03695 0.32 -1.4
Or see this region's nucleotide sequence