Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03560 and MMJJ_RS03565 are separated by 212 nucleotides MMJJ_RS03565 and MMJJ_RS03570 are separated by 27 nucleotides MMJJ_RS03570 and MMJJ_RS03575 are separated by 110 nucleotides MMJJ_RS03575 and MMJJ_RS03580 are separated by 120 nucleotides
MMJJ_RS03560: MMJJ_RS03560 - sodium-extruding oxaloacetate decarboxylase subunit alpha, at 665,975 to 667,684
_RS03560
MMJJ_RS03565: MMJJ_RS03565 - tRNA-Glu, at 667,897 to 667,971
_RS03565
MMJJ_RS03570: MMJJ_RS03570 - tRNA-Arg, at 667,999 to 668,076
_RS03570
MMJJ_RS03575: MMJJ_RS03575 - NUDIX hydrolase, at 668,187 to 668,702
_RS03575
MMJJ_RS03580: MMJJ_RS03580 - TIGR00303 family protein, at 668,823 to 669,875
_RS03580
Position (kb) 668
669 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 667.257 kb on - strand at 667.782 kb on - strand at 667.841 kb on - strand at 667.841 kb on - strand at 667.842 kb on + strand at 667.842 kb on + strand at 667.980 kb on + strand at 668.149 kb on + strand at 668.165 kb on - strand at 668.166 kb on + strand at 668.166 kb on + strand at 668.173 kb on + strand at 668.174 kb on - strand at 668.179 kb on - strand at 668.179 kb on - strand at 668.181 kb on - strand at 668.182 kb on + strand at 668.182 kb on + strand at 668.182 kb on + strand at 668.196 kb on - strand at 668.196 kb on - strand at 668.197 kb on + strand at 668.197 kb on + strand at 668.198 kb on - strand at 668.198 kb on - strand at 668.198 kb on - strand at 668.199 kb on + strand at 668.199 kb on + strand at 668.199 kb on + strand at 668.199 kb on + strand at 668.199 kb on + strand at 668.199 kb on + strand at 668.199 kb on + strand at 668.199 kb on + strand at 668.201 kb on + strand at 668.217 kb on - strand at 668.218 kb on + strand at 668.256 kb on - strand, within MMJJ_RS03575 at 668.270 kb on - strand, within MMJJ_RS03575 at 668.270 kb on - strand, within MMJJ_RS03575 at 668.274 kb on - strand, within MMJJ_RS03575 at 668.274 kb on - strand, within MMJJ_RS03575 at 668.274 kb on - strand, within MMJJ_RS03575 at 668.274 kb on - strand, within MMJJ_RS03575 at 668.307 kb on - strand, within MMJJ_RS03575 at 668.348 kb on - strand, within MMJJ_RS03575 at 668.390 kb on - strand, within MMJJ_RS03575 at 668.409 kb on + strand, within MMJJ_RS03575 at 668.487 kb on - strand, within MMJJ_RS03575 at 668.548 kb on - strand, within MMJJ_RS03575 at 668.549 kb on + strand, within MMJJ_RS03575 at 668.552 kb on - strand, within MMJJ_RS03575 at 668.571 kb on - strand, within MMJJ_RS03575 at 668.572 kb on + strand, within MMJJ_RS03575 at 668.649 kb on - strand, within MMJJ_RS03575 at 668.688 kb on - strand at 668.689 kb on + strand at 668.693 kb on - strand at 668.693 kb on - strand at 668.693 kb on - strand at 668.702 kb on - strand at 668.741 kb on - strand at 668.742 kb on + strand at 668.746 kb on - strand at 668.764 kb on + strand at 668.764 kb on + strand at 668.775 kb on - strand at 668.775 kb on - strand at 668.776 kb on + strand at 668.776 kb on + strand at 668.780 kb on - strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.781 kb on + strand at 668.794 kb on - strand at 668.794 kb on - strand at 668.794 kb on - strand at 668.794 kb on - strand at 668.795 kb on + strand at 668.795 kb on + strand at 668.796 kb on - strand at 668.797 kb on + strand at 668.797 kb on + strand at 668.797 kb on + strand at 668.797 kb on + strand at 668.799 kb on - strand at 668.799 kb on - strand at 668.800 kb on + strand at 668.800 kb on + strand at 668.800 kb on + strand at 668.800 kb on + strand at 668.803 kb on - strand at 668.803 kb on - strand at 668.810 kb on + strand at 668.858 kb on + strand at 668.898 kb on + strand at 668.922 kb on - strand at 668.922 kb on - strand at 668.922 kb on - strand at 668.923 kb on + strand at 668.995 kb on - strand, within MMJJ_RS03580 at 669.239 kb on - strand, within MMJJ_RS03580 at 669.245 kb on - strand, within MMJJ_RS03580 at 669.255 kb on + strand, within MMJJ_RS03580 at 669.260 kb on + strand, within MMJJ_RS03580 at 669.263 kb on + strand, within MMJJ_RS03580 at 669.339 kb on + strand, within MMJJ_RS03580
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 667,257 - +1.4 667,782 - -0.6 667,841 - -2.4 667,841 - +0.4 667,842 + -0.1 667,842 + -0.2 667,980 + +1.1 668,149 + -0.4 668,165 - -3.3 668,166 + -1.5 668,166 + -0.8 668,173 + -2.3 668,174 - -2.5 668,179 - -0.0 668,179 - +0.9 668,181 - +3.5 668,182 + -1.1 668,182 + +2.2 668,182 + +1.0 668,196 - -1.9 668,196 - -3.1 668,197 + -0.4 668,197 + -1.9 668,198 - -0.2 668,198 - +1.9 668,198 - -2.8 668,199 + -1.8 668,199 + -0.8 668,199 + -0.9 668,199 + +2.5 668,199 + +2.2 668,199 + -0.3 668,199 + -0.2 668,199 + +0.1 668,201 + +0.3 668,217 - -1.2 668,218 + -2.7 668,256 - MMJJ_RS03575 0.13 +1.9 668,270 - MMJJ_RS03575 0.16 +0.5 668,270 - MMJJ_RS03575 0.16 +1.0 668,274 - MMJJ_RS03575 0.17 -0.6 668,274 - MMJJ_RS03575 0.17 +0.7 668,274 - MMJJ_RS03575 0.17 +3.9 668,274 - MMJJ_RS03575 0.17 +0.1 668,307 - MMJJ_RS03575 0.23 +1.4 668,348 - MMJJ_RS03575 0.31 -1.1 668,390 - MMJJ_RS03575 0.39 -2.4 668,409 + MMJJ_RS03575 0.43 +0.2 668,487 - MMJJ_RS03575 0.58 +0.3 668,548 - MMJJ_RS03575 0.70 +0.7 668,549 + MMJJ_RS03575 0.70 +3.1 668,552 - MMJJ_RS03575 0.71 -2.9 668,571 - MMJJ_RS03575 0.74 -0.3 668,572 + MMJJ_RS03575 0.75 -2.3 668,649 - MMJJ_RS03575 0.90 +1.9 668,688 - +0.4 668,689 + +1.3 668,693 - +2.1 668,693 - +0.1 668,693 - +1.8 668,702 - +2.2 668,741 - -1.5 668,742 + -1.2 668,746 - -1.9 668,764 + +2.1 668,764 + -2.1 668,775 - +1.6 668,775 - +3.0 668,776 + -3.6 668,776 + +2.7 668,780 - -3.1 668,781 + -2.3 668,781 + -1.2 668,781 + -2.2 668,794 - -0.8 668,794 - +2.8 668,794 - +1.3 668,794 - -0.7 668,795 + -2.2 668,795 + -5.4 668,796 - -1.4 668,797 + -2.6 668,797 + +2.2 668,797 + -3.4 668,797 + +0.1 668,799 - +0.3 668,799 - +0.4 668,800 + -3.1 668,800 + +2.9 668,800 + -0.6 668,800 + +1.8 668,803 - -0.8 668,803 - +0.0 668,810 + +2.6 668,858 + -0.4 668,898 + +0.4 668,922 - -0.9 668,922 - -0.2 668,922 - -1.2 668,923 + -0.2 668,995 - MMJJ_RS03580 0.16 -1.9 669,239 - MMJJ_RS03580 0.40 +0.4 669,245 - MMJJ_RS03580 0.40 +1.4 669,255 + MMJJ_RS03580 0.41 -0.9 669,260 + MMJJ_RS03580 0.42 -1.4 669,263 + MMJJ_RS03580 0.42 -0.2 669,339 + MMJJ_RS03580 0.49 +0.4
Or see this region's nucleotide sequence