Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03430

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS03415 and MMJJ_RS03420 overlap by 8 nucleotidesMMJJ_RS03420 and MMJJ_RS03425 are separated by 0 nucleotidesMMJJ_RS03425 and MMJJ_RS03430 are separated by 220 nucleotidesMMJJ_RS03430 and MMJJ_RS03435 are separated by 115 nucleotides MMJJ_RS03415: MMJJ_RS03415 - hypothetical protein, at 642,654 to 643,091 _RS03415 MMJJ_RS03420: MMJJ_RS03420 - hypothetical protein, at 643,084 to 643,359 _RS03420 MMJJ_RS03425: MMJJ_RS03425 - DUF2080 family transposase-associated protein, at 643,360 to 643,485 _RS03425 MMJJ_RS03430: MMJJ_RS03430 - winged helix-turn-helix domain-containing protein, at 643,706 to 644,071 _RS03430 MMJJ_RS03435: MMJJ_RS03435 - hypothetical protein, at 644,187 to 645,512 _RS03435 Position (kb) 643 644 645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 642.734 kb on + strand, within MMJJ_RS03415at 642.741 kb on - strand, within MMJJ_RS03415at 642.795 kb on + strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.821 kb on - strand, within MMJJ_RS03415at 642.873 kb on - strand, within MMJJ_RS03415at 642.891 kb on - strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.899 kb on + strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.951 kb on - strand, within MMJJ_RS03415at 642.957 kb on - strand, within MMJJ_RS03415at 642.958 kb on + strand, within MMJJ_RS03415at 642.988 kb on - strand, within MMJJ_RS03415at 643.065 kb on + strandat 643.071 kb on + strandat 643.071 kb on + strandat 643.108 kb on - strandat 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.116 kb on + strand, within MMJJ_RS03420at 643.133 kb on - strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.134 kb on + strand, within MMJJ_RS03420at 643.188 kb on + strand, within MMJJ_RS03420at 643.213 kb on - strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.214 kb on + strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.217 kb on - strand, within MMJJ_RS03420at 643.218 kb on + strand, within MMJJ_RS03420at 643.232 kb on + strand, within MMJJ_RS03420at 643.238 kb on - strand, within MMJJ_RS03420at 643.239 kb on + strand, within MMJJ_RS03420at 643.279 kb on - strand, within MMJJ_RS03420at 643.280 kb on + strand, within MMJJ_RS03420at 643.312 kb on - strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.313 kb on + strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.317 kb on - strand, within MMJJ_RS03420at 643.318 kb on + strand, within MMJJ_RS03420at 643.319 kb on - strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.320 kb on + strand, within MMJJ_RS03420at 643.362 kb on + strandat 643.393 kb on - strand, within MMJJ_RS03425at 643.395 kb on - strand, within MMJJ_RS03425at 643.404 kb on - strand, within MMJJ_RS03425at 643.405 kb on + strand, within MMJJ_RS03425at 643.466 kb on + strand, within MMJJ_RS03425at 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.591 kb on - strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.592 kb on + strandat 643.661 kb on - strandat 643.667 kb on + strandat 643.682 kb on - strandat 643.779 kb on + strand, within MMJJ_RS03430at 643.835 kb on + strandat 643.845 kb on - strand, within MMJJ_RS03430at 643.863 kb on - strand, within MMJJ_RS03430at 643.906 kb on - strand, within MMJJ_RS03430at 643.918 kb on - strand, within MMJJ_RS03430at 643.954 kb on + strand, within MMJJ_RS03430at 643.956 kb on + strandat 644.001 kb on - strand, within MMJJ_RS03430at 644.001 kb on - strand, within MMJJ_RS03430at 644.020 kb on - strand, within MMJJ_RS03430at 644.020 kb on - strand, within MMJJ_RS03430at 644.021 kb on + strand, within MMJJ_RS03430at 644.045 kb on + strandat 644.069 kb on - strandat 644.083 kb on + strandat 644.083 kb on + strandat 644.085 kb on - strandat 644.085 kb on - strandat 644.090 kb on + strandat 644.090 kb on + strandat 644.091 kb on - strandat 644.092 kb on + strandat 644.099 kb on + strandat 644.127 kb on - strandat 644.132 kb on + strandat 644.133 kb on - strandat 644.133 kb on - strandat 644.138 kb on + strandat 644.138 kb on + strandat 644.142 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.146 kb on - strandat 644.242 kb on - strandat 644.247 kb on - strandat 644.247 kb on - strandat 644.247 kb on - strandat 644.247 kb on - strandat 644.248 kb on + strandat 644.249 kb on - strandat 644.249 kb on - strandat 644.249 kb on - strandat 644.250 kb on + strandat 644.250 kb on + strandat 644.250 kb on + strandat 644.307 kb on - strandat 644.308 kb on + strandat 644.312 kb on + strandat 644.376 kb on - strand, within MMJJ_RS03435at 644.382 kb on + strand, within MMJJ_RS03435at 644.400 kb on + strand, within MMJJ_RS03435at 644.403 kb on + strand, within MMJJ_RS03435at 644.418 kb on + strand, within MMJJ_RS03435at 644.432 kb on + strand, within MMJJ_RS03435at 644.463 kb on - strand, within MMJJ_RS03435at 644.464 kb on + strand, within MMJJ_RS03435at 644.464 kb on + strand, within MMJJ_RS03435at 644.464 kb on + strand, within MMJJ_RS03435at 644.480 kb on - strand, within MMJJ_RS03435at 644.544 kb on - strand, within MMJJ_RS03435at 644.545 kb on + strand, within MMJJ_RS03435at 644.545 kb on + strand, within MMJJ_RS03435at 644.545 kb on + strand, within MMJJ_RS03435at 644.545 kb on + strand, within MMJJ_RS03435at 644.587 kb on - strand, within MMJJ_RS03435at 644.594 kb on - strand, within MMJJ_RS03435at 644.625 kb on + strand, within MMJJ_RS03435at 644.643 kb on + strand, within MMJJ_RS03435at 644.645 kb on + strand, within MMJJ_RS03435at 644.690 kb on + strand, within MMJJ_RS03435at 644.707 kb on - strand, within MMJJ_RS03435at 644.708 kb on + strand, within MMJJ_RS03435at 644.750 kb on - strand, within MMJJ_RS03435at 644.750 kb on - strand, within MMJJ_RS03435at 644.754 kb on + strand, within MMJJ_RS03435at 644.754 kb on + strand, within MMJJ_RS03435at 644.779 kb on - strand, within MMJJ_RS03435at 644.823 kb on - strand, within MMJJ_RS03435at 644.824 kb on + strand, within MMJJ_RS03435at 644.824 kb on + strand, within MMJJ_RS03435at 644.828 kb on - strand, within MMJJ_RS03435at 644.858 kb on - strand, within MMJJ_RS03435at 644.858 kb on - strand, within MMJJ_RS03435at 644.905 kb on - strand, within MMJJ_RS03435at 644.915 kb on + strand, within MMJJ_RS03435at 644.978 kb on - strand, within MMJJ_RS03435at 644.978 kb on - strand, within MMJJ_RS03435at 644.978 kb on - strand, within MMJJ_RS03435at 644.979 kb on + strand, within MMJJ_RS03435at 644.981 kb on - strand, within MMJJ_RS03435at 644.982 kb on + strand, within MMJJ_RS03435at 644.983 kb on - strand, within MMJJ_RS03435at 644.983 kb on - strand, within MMJJ_RS03435at 644.983 kb on - strand, within MMJJ_RS03435at 644.984 kb on + strand, within MMJJ_RS03435at 644.984 kb on + strand, within MMJJ_RS03435at 644.984 kb on + strand, within MMJJ_RS03435at 645.013 kb on - strand, within MMJJ_RS03435at 645.033 kb on - strand, within MMJJ_RS03435at 645.053 kb on - strand, within MMJJ_RS03435at 645.068 kb on + strand, within MMJJ_RS03435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
remove
642,734 + MMJJ_RS03415 0.18 -1.4
642,741 - MMJJ_RS03415 0.20 -1.2
642,795 + MMJJ_RS03415 0.32 +1.4
642,821 - MMJJ_RS03415 0.38 -3.1
642,821 - MMJJ_RS03415 0.38 -3.3
642,873 - MMJJ_RS03415 0.50 -1.0
642,891 - MMJJ_RS03415 0.54 +0.8
642,899 + MMJJ_RS03415 0.56 +1.6
642,899 + MMJJ_RS03415 0.56 -3.3
642,951 - MMJJ_RS03415 0.68 +0.2
642,951 - MMJJ_RS03415 0.68 -2.2
642,951 - MMJJ_RS03415 0.68 -1.7
642,957 - MMJJ_RS03415 0.69 +0.5
642,958 + MMJJ_RS03415 0.69 -2.4
642,988 - MMJJ_RS03415 0.76 -0.1
643,065 + -2.6
643,071 + +2.4
643,071 + +0.5
643,108 - -1.4
643,116 + MMJJ_RS03420 0.12 -0.2
643,116 + MMJJ_RS03420 0.12 -0.9
643,116 + MMJJ_RS03420 0.12 -1.2
643,133 - MMJJ_RS03420 0.18 +2.1
643,134 + MMJJ_RS03420 0.18 +0.3
643,134 + MMJJ_RS03420 0.18 +1.3
643,188 + MMJJ_RS03420 0.38 +3.1
643,213 - MMJJ_RS03420 0.47 -1.4
643,214 + MMJJ_RS03420 0.47 -0.5
643,214 + MMJJ_RS03420 0.47 -2.0
643,214 + MMJJ_RS03420 0.47 +0.9
643,217 - MMJJ_RS03420 0.48 +2.0
643,217 - MMJJ_RS03420 0.48 -2.8
643,218 + MMJJ_RS03420 0.49 -0.6
643,232 + MMJJ_RS03420 0.54 +4.8
643,238 - MMJJ_RS03420 0.56 -1.9
643,239 + MMJJ_RS03420 0.56 -2.6
643,279 - MMJJ_RS03420 0.71 +3.8
643,280 + MMJJ_RS03420 0.71 -0.2
643,312 - MMJJ_RS03420 0.83 -3.5
643,313 + MMJJ_RS03420 0.83 +0.1
643,313 + MMJJ_RS03420 0.83 -1.9
643,317 - MMJJ_RS03420 0.84 -1.8
643,317 - MMJJ_RS03420 0.84 -0.6
643,317 - MMJJ_RS03420 0.84 -1.6
643,317 - MMJJ_RS03420 0.84 +0.0
643,318 + MMJJ_RS03420 0.85 +2.4
643,319 - MMJJ_RS03420 0.85 +0.8
643,320 + MMJJ_RS03420 0.86 +0.9
643,320 + MMJJ_RS03420 0.86 +1.4
643,362 + -2.1
643,393 - MMJJ_RS03425 0.26 -1.0
643,395 - MMJJ_RS03425 0.28 +1.8
643,404 - MMJJ_RS03425 0.35 +0.1
643,405 + MMJJ_RS03425 0.36 -1.9
643,466 + MMJJ_RS03425 0.84 -3.2
643,591 - -1.3
643,591 - +1.6
643,591 - +0.9
643,591 - -0.2
643,592 + +3.0
643,592 + +1.1
643,592 + +0.3
643,592 + +0.6
643,661 - -2.0
643,667 + +1.4
643,682 - -0.2
643,779 + MMJJ_RS03430 0.20 +1.4
643,835 + -0.6
643,845 - MMJJ_RS03430 0.38 -0.6
643,863 - MMJJ_RS03430 0.43 -1.2
643,906 - MMJJ_RS03430 0.55 -1.6
643,918 - MMJJ_RS03430 0.58 +1.4
643,954 + MMJJ_RS03430 0.68 -1.2
643,956 + +1.4
644,001 - MMJJ_RS03430 0.81 -3.8
644,001 - MMJJ_RS03430 0.81 -1.4
644,020 - MMJJ_RS03430 0.86 +0.6
644,020 - MMJJ_RS03430 0.86 +3.6
644,021 + MMJJ_RS03430 0.86 -3.0
644,045 + +0.4
644,069 - +0.4
644,083 + +1.5
644,083 + +0.9
644,085 - +0.5
644,085 - -2.7
644,090 + -0.8
644,090 + -1.8
644,091 - -1.7
644,092 + +3.0
644,099 + +2.5
644,127 - +1.0
644,132 + -2.6
644,133 - -1.0
644,133 - +0.3
644,138 + +0.0
644,138 + +1.3
644,142 - +0.0
644,146 - +0.6
644,146 - -1.8
644,146 - +2.8
644,242 - -3.0
644,247 - -2.0
644,247 - -2.0
644,247 - -1.7
644,247 - +2.1
644,248 + +0.2
644,249 - -0.3
644,249 - -0.1
644,249 - +0.6
644,250 + -3.7
644,250 + +2.7
644,250 + -2.8
644,307 - -1.4
644,308 + +2.2
644,312 + -1.4
644,376 - MMJJ_RS03435 0.14 +1.4
644,382 + MMJJ_RS03435 0.15 +0.0
644,400 + MMJJ_RS03435 0.16 +1.0
644,403 + MMJJ_RS03435 0.16 -0.6
644,418 + MMJJ_RS03435 0.17 -2.4
644,432 + MMJJ_RS03435 0.18 +0.2
644,463 - MMJJ_RS03435 0.21 -2.6
644,464 + MMJJ_RS03435 0.21 -0.3
644,464 + MMJJ_RS03435 0.21 -1.4
644,464 + MMJJ_RS03435 0.21 +0.0
644,480 - MMJJ_RS03435 0.22 -0.6
644,544 - MMJJ_RS03435 0.27 +0.4
644,545 + MMJJ_RS03435 0.27 +2.2
644,545 + MMJJ_RS03435 0.27 -0.2
644,545 + MMJJ_RS03435 0.27 -0.5
644,545 + MMJJ_RS03435 0.27 +2.1
644,587 - MMJJ_RS03435 0.30 +0.2
644,594 - MMJJ_RS03435 0.31 +2.0
644,625 + MMJJ_RS03435 0.33 +1.5
644,643 + MMJJ_RS03435 0.34 -0.8
644,645 + MMJJ_RS03435 0.35 +1.9
644,690 + MMJJ_RS03435 0.38 +1.8
644,707 - MMJJ_RS03435 0.39 +1.0
644,708 + MMJJ_RS03435 0.39 +0.6
644,750 - MMJJ_RS03435 0.42 +1.3
644,750 - MMJJ_RS03435 0.42 -1.9
644,754 + MMJJ_RS03435 0.43 -0.4
644,754 + MMJJ_RS03435 0.43 -1.3
644,779 - MMJJ_RS03435 0.45 -1.2
644,823 - MMJJ_RS03435 0.48 +2.0
644,824 + MMJJ_RS03435 0.48 -0.6
644,824 + MMJJ_RS03435 0.48 -0.2
644,828 - MMJJ_RS03435 0.48 +0.4
644,858 - MMJJ_RS03435 0.51 -0.5
644,858 - MMJJ_RS03435 0.51 -0.2
644,905 - MMJJ_RS03435 0.54 -1.8
644,915 + MMJJ_RS03435 0.55 -1.4
644,978 - MMJJ_RS03435 0.60 -1.4
644,978 - MMJJ_RS03435 0.60 -2.4
644,978 - MMJJ_RS03435 0.60 +0.4
644,979 + MMJJ_RS03435 0.60 -1.0
644,981 - MMJJ_RS03435 0.60 +1.1
644,982 + MMJJ_RS03435 0.60 +3.8
644,983 - MMJJ_RS03435 0.60 +1.4
644,983 - MMJJ_RS03435 0.60 -1.0
644,983 - MMJJ_RS03435 0.60 -0.1
644,984 + MMJJ_RS03435 0.60 -3.3
644,984 + MMJJ_RS03435 0.60 +1.9
644,984 + MMJJ_RS03435 0.60 +1.4
645,013 - MMJJ_RS03435 0.62 -0.2
645,033 - MMJJ_RS03435 0.64 +2.2
645,053 - MMJJ_RS03435 0.65 +0.3
645,068 + MMJJ_RS03435 0.66 +2.1

Or see this region's nucleotide sequence