Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02055 and MMJJ_RS02060 are separated by 8 nucleotides MMJJ_RS02060 and MMJJ_RS02065 are separated by 73 nucleotides
MMJJ_RS02055: MMJJ_RS02055 - GTP 3',8-cyclase MoaA, at 391,292 to 392,185
_RS02055
MMJJ_RS02060: MMJJ_RS02060 - cupin domain-containing protein, at 392,194 to 392,694
_RS02060
MMJJ_RS02065: MMJJ_RS02065 - S-layer protein, at 392,768 to 394,354
_RS02065
Position (kb) 392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 391.251 kb on + strand at 391.287 kb on - strand at 391.346 kb on + strand at 391.527 kb on + strand, within MMJJ_RS02055 at 391.527 kb on + strand, within MMJJ_RS02055 at 391.527 kb on + strand, within MMJJ_RS02055 at 391.527 kb on + strand, within MMJJ_RS02055 at 391.546 kb on + strand at 391.564 kb on - strand, within MMJJ_RS02055 at 391.578 kb on - strand, within MMJJ_RS02055 at 391.589 kb on - strand, within MMJJ_RS02055 at 391.590 kb on + strand, within MMJJ_RS02055 at 391.638 kb on - strand, within MMJJ_RS02055 at 391.642 kb on - strand, within MMJJ_RS02055 at 391.643 kb on + strand, within MMJJ_RS02055 at 391.728 kb on - strand, within MMJJ_RS02055 at 391.735 kb on + strand, within MMJJ_RS02055 at 391.735 kb on + strand, within MMJJ_RS02055 at 391.844 kb on + strand, within MMJJ_RS02055 at 391.863 kb on - strand, within MMJJ_RS02055 at 391.863 kb on - strand, within MMJJ_RS02055 at 391.878 kb on - strand, within MMJJ_RS02055 at 391.879 kb on + strand, within MMJJ_RS02055 at 391.879 kb on + strand, within MMJJ_RS02055 at 391.926 kb on - strand, within MMJJ_RS02055 at 391.927 kb on + strand, within MMJJ_RS02055 at 391.927 kb on + strand, within MMJJ_RS02055 at 391.927 kb on + strand, within MMJJ_RS02055 at 391.930 kb on - strand, within MMJJ_RS02055 at 391.961 kb on - strand, within MMJJ_RS02055 at 391.978 kb on + strand, within MMJJ_RS02055 at 392.037 kb on - strand, within MMJJ_RS02055 at 392.045 kb on + strand, within MMJJ_RS02055 at 392.045 kb on + strand, within MMJJ_RS02055 at 392.045 kb on + strand, within MMJJ_RS02055 at 392.057 kb on - strand, within MMJJ_RS02055 at 392.061 kb on - strand, within MMJJ_RS02055 at 392.061 kb on - strand, within MMJJ_RS02055 at 392.086 kb on - strand, within MMJJ_RS02055 at 392.128 kb on - strand at 392.129 kb on + strand at 392.129 kb on + strand at 392.192 kb on - strand at 392.209 kb on - strand at 392.217 kb on - strand at 392.254 kb on - strand, within MMJJ_RS02060 at 392.255 kb on + strand, within MMJJ_RS02060 at 392.270 kb on + strand, within MMJJ_RS02060 at 392.270 kb on + strand, within MMJJ_RS02060 at 392.303 kb on - strand, within MMJJ_RS02060 at 392.315 kb on + strand, within MMJJ_RS02060 at 392.315 kb on + strand, within MMJJ_RS02060 at 392.316 kb on - strand, within MMJJ_RS02060 at 392.317 kb on + strand, within MMJJ_RS02060 at 392.317 kb on + strand, within MMJJ_RS02060 at 392.338 kb on + strand, within MMJJ_RS02060 at 392.347 kb on - strand, within MMJJ_RS02060 at 392.358 kb on + strand, within MMJJ_RS02060 at 392.413 kb on - strand, within MMJJ_RS02060 at 392.416 kb on - strand, within MMJJ_RS02060 at 392.432 kb on - strand, within MMJJ_RS02060 at 392.433 kb on + strand, within MMJJ_RS02060 at 392.436 kb on - strand, within MMJJ_RS02060 at 392.436 kb on - strand, within MMJJ_RS02060 at 392.442 kb on - strand, within MMJJ_RS02060 at 392.443 kb on + strand, within MMJJ_RS02060 at 392.443 kb on + strand, within MMJJ_RS02060 at 392.464 kb on - strand, within MMJJ_RS02060 at 392.464 kb on - strand, within MMJJ_RS02060 at 392.466 kb on - strand, within MMJJ_RS02060 at 392.466 kb on - strand, within MMJJ_RS02060 at 392.466 kb on - strand, within MMJJ_RS02060 at 392.467 kb on + strand, within MMJJ_RS02060 at 392.467 kb on + strand, within MMJJ_RS02060 at 392.487 kb on - strand, within MMJJ_RS02060 at 392.487 kb on - strand, within MMJJ_RS02060 at 392.516 kb on - strand, within MMJJ_RS02060 at 392.516 kb on - strand, within MMJJ_RS02060 at 392.708 kb on - strand at 392.708 kb on - strand at 392.709 kb on + strand at 392.712 kb on + strand at 392.717 kb on + strand at 392.717 kb on + strand at 392.717 kb on + strand at 392.737 kb on - strand at 392.738 kb on + strand at 392.738 kb on + strand at 392.738 kb on + strand at 392.739 kb on - strand at 392.739 kb on - strand at 392.742 kb on - strand at 392.743 kb on + strand at 392.743 kb on + strand at 392.767 kb on - strand at 392.767 kb on - strand at 392.768 kb on + strand at 392.797 kb on - strand at 392.797 kb on - strand at 392.797 kb on - strand at 392.812 kb on - strand at 392.817 kb on - strand at 392.817 kb on - strand at 392.817 kb on - strand at 392.817 kb on - strand at 392.820 kb on - strand at 392.880 kb on - strand at 392.881 kb on + strand at 392.892 kb on - strand at 392.896 kb on + strand at 392.918 kb on - strand at 392.925 kb on - strand at 393.028 kb on - strand, within MMJJ_RS02065 at 393.088 kb on - strand, within MMJJ_RS02065 at 393.191 kb on - strand, within MMJJ_RS02065 at 393.246 kb on - strand, within MMJJ_RS02065 at 393.264 kb on - strand, within MMJJ_RS02065 at 393.264 kb on - strand, within MMJJ_RS02065 at 393.265 kb on + strand, within MMJJ_RS02065 at 393.265 kb on + strand, within MMJJ_RS02065 at 393.265 kb on + strand, within MMJJ_RS02065 at 393.265 kb on + strand, within MMJJ_RS02065 at 393.265 kb on + strand, within MMJJ_RS02065 at 393.265 kb on + strand, within MMJJ_RS02065 at 393.318 kb on - strand, within MMJJ_RS02065 at 393.319 kb on + strand, within MMJJ_RS02065 at 393.359 kb on - strand, within MMJJ_RS02065 at 393.359 kb on - strand, within MMJJ_RS02065 at 393.360 kb on + strand, within MMJJ_RS02065 at 393.365 kb on + strand, within MMJJ_RS02065 at 393.383 kb on - strand, within MMJJ_RS02065 at 393.393 kb on - strand, within MMJJ_RS02065 at 393.393 kb on - strand, within MMJJ_RS02065 at 393.397 kb on + strand, within MMJJ_RS02065 at 393.422 kb on + strand, within MMJJ_RS02065 at 393.426 kb on - strand, within MMJJ_RS02065 at 393.469 kb on - strand, within MMJJ_RS02065 at 393.494 kb on + strand, within MMJJ_RS02065 at 393.505 kb on - strand, within MMJJ_RS02065 at 393.506 kb on + strand, within MMJJ_RS02065 at 393.508 kb on - strand, within MMJJ_RS02065 at 393.508 kb on - strand, within MMJJ_RS02065 at 393.509 kb on + strand, within MMJJ_RS02065 at 393.510 kb on - strand, within MMJJ_RS02065 at 393.510 kb on - strand, within MMJJ_RS02065 at 393.510 kb on - strand, within MMJJ_RS02065 at 393.510 kb on - strand, within MMJJ_RS02065 at 393.511 kb on + strand, within MMJJ_RS02065 at 393.511 kb on + strand, within MMJJ_RS02065 at 393.511 kb on + strand, within MMJJ_RS02065 at 393.511 kb on - strand, within MMJJ_RS02065 at 393.514 kb on + strand, within MMJJ_RS02065 at 393.516 kb on + strand, within MMJJ_RS02065 at 393.516 kb on + strand, within MMJJ_RS02065 at 393.560 kb on - strand, within MMJJ_RS02065 at 393.561 kb on + strand, within MMJJ_RS02065 at 393.561 kb on + strand, within MMJJ_RS02065 at 393.563 kb on + strand at 393.563 kb on + strand, within MMJJ_RS02065 at 393.564 kb on - strand, within MMJJ_RS02065 at 393.565 kb on + strand, within MMJJ_RS02065 at 393.565 kb on + strand, within MMJJ_RS02065 at 393.620 kb on - strand, within MMJJ_RS02065 at 393.658 kb on + strand, within MMJJ_RS02065 at 393.658 kb on + strand, within MMJJ_RS02065 at 393.658 kb on + strand, within MMJJ_RS02065
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 391,251 + +2.4 391,287 - +1.4 391,346 + +2.5 391,527 + MMJJ_RS02055 0.26 +0.5 391,527 + MMJJ_RS02055 0.26 +0.5 391,527 + MMJJ_RS02055 0.26 +2.0 391,527 + MMJJ_RS02055 0.26 +0.9 391,546 + +1.2 391,564 - MMJJ_RS02055 0.30 +1.8 391,578 - MMJJ_RS02055 0.32 +1.4 391,589 - MMJJ_RS02055 0.33 -0.4 391,590 + MMJJ_RS02055 0.33 +1.2 391,638 - MMJJ_RS02055 0.39 +0.7 391,642 - MMJJ_RS02055 0.39 +1.1 391,643 + MMJJ_RS02055 0.39 +0.8 391,728 - MMJJ_RS02055 0.49 +4.8 391,735 + MMJJ_RS02055 0.50 +2.6 391,735 + MMJJ_RS02055 0.50 +0.7 391,844 + MMJJ_RS02055 0.62 +1.6 391,863 - MMJJ_RS02055 0.64 +2.1 391,863 - MMJJ_RS02055 0.64 +1.7 391,878 - MMJJ_RS02055 0.66 -0.1 391,879 + MMJJ_RS02055 0.66 +1.3 391,879 + MMJJ_RS02055 0.66 +0.7 391,926 - MMJJ_RS02055 0.71 +2.2 391,927 + MMJJ_RS02055 0.71 -0.1 391,927 + MMJJ_RS02055 0.71 +1.5 391,927 + MMJJ_RS02055 0.71 +1.5 391,930 - MMJJ_RS02055 0.71 +0.6 391,961 - MMJJ_RS02055 0.75 +2.2 391,978 + MMJJ_RS02055 0.77 +2.4 392,037 - MMJJ_RS02055 0.83 +3.3 392,045 + MMJJ_RS02055 0.84 +2.5 392,045 + MMJJ_RS02055 0.84 -0.4 392,045 + MMJJ_RS02055 0.84 -0.8 392,057 - MMJJ_RS02055 0.86 -0.6 392,061 - MMJJ_RS02055 0.86 +1.8 392,061 - MMJJ_RS02055 0.86 +1.2 392,086 - MMJJ_RS02055 0.89 +2.1 392,128 - -0.8 392,129 + +1.7 392,129 + +2.1 392,192 - -1.7 392,209 - +2.9 392,217 - -0.7 392,254 - MMJJ_RS02060 0.12 +0.5 392,255 + MMJJ_RS02060 0.12 +2.2 392,270 + MMJJ_RS02060 0.15 +4.2 392,270 + MMJJ_RS02060 0.15 -0.2 392,303 - MMJJ_RS02060 0.22 +3.1 392,315 + MMJJ_RS02060 0.24 +0.5 392,315 + MMJJ_RS02060 0.24 +2.3 392,316 - MMJJ_RS02060 0.24 -2.1 392,317 + MMJJ_RS02060 0.25 +0.1 392,317 + MMJJ_RS02060 0.25 -1.6 392,338 + MMJJ_RS02060 0.29 -1.3 392,347 - MMJJ_RS02060 0.31 -0.5 392,358 + MMJJ_RS02060 0.33 -0.5 392,413 - MMJJ_RS02060 0.44 +3.5 392,416 - MMJJ_RS02060 0.44 +0.5 392,432 - MMJJ_RS02060 0.48 +0.1 392,433 + MMJJ_RS02060 0.48 +3.2 392,436 - MMJJ_RS02060 0.48 +1.5 392,436 - MMJJ_RS02060 0.48 -1.3 392,442 - MMJJ_RS02060 0.50 +3.7 392,443 + MMJJ_RS02060 0.50 +1.0 392,443 + MMJJ_RS02060 0.50 +0.0 392,464 - MMJJ_RS02060 0.54 -1.3 392,464 - MMJJ_RS02060 0.54 +2.6 392,466 - MMJJ_RS02060 0.54 +2.3 392,466 - MMJJ_RS02060 0.54 +2.7 392,466 - MMJJ_RS02060 0.54 +1.6 392,467 + MMJJ_RS02060 0.54 +0.2 392,467 + MMJJ_RS02060 0.54 -2.6 392,487 - MMJJ_RS02060 0.58 -0.8 392,487 - MMJJ_RS02060 0.58 -1.0 392,516 - MMJJ_RS02060 0.64 -1.6 392,516 - MMJJ_RS02060 0.64 -0.1 392,708 - +3.1 392,708 - -0.8 392,709 + -1.4 392,712 + -2.8 392,717 + -0.8 392,717 + -1.6 392,717 + +3.8 392,737 - +0.9 392,738 + +0.1 392,738 + -1.4 392,738 + +3.3 392,739 - -0.6 392,739 - -0.6 392,742 - -2.3 392,743 + -2.0 392,743 + +5.1 392,767 - +5.0 392,767 - -1.1 392,768 + +1.8 392,797 - -0.1 392,797 - +4.9 392,797 - -0.5 392,812 - -1.1 392,817 - +2.6 392,817 - -1.1 392,817 - +0.8 392,817 - +0.0 392,820 - -1.2 392,880 - +2.8 392,881 + +3.8 392,892 - +1.6 392,896 + +0.2 392,918 - +1.8 392,925 - +0.6 393,028 - MMJJ_RS02065 0.16 -0.5 393,088 - MMJJ_RS02065 0.20 +2.7 393,191 - MMJJ_RS02065 0.27 -1.1 393,246 - MMJJ_RS02065 0.30 -0.6 393,264 - MMJJ_RS02065 0.31 -0.8 393,264 - MMJJ_RS02065 0.31 +3.3 393,265 + MMJJ_RS02065 0.31 -0.5 393,265 + MMJJ_RS02065 0.31 -1.1 393,265 + MMJJ_RS02065 0.31 -0.4 393,265 + MMJJ_RS02065 0.31 +1.9 393,265 + MMJJ_RS02065 0.31 -1.9 393,265 + MMJJ_RS02065 0.31 -0.8 393,318 - MMJJ_RS02065 0.35 +1.1 393,319 + MMJJ_RS02065 0.35 -0.8 393,359 - MMJJ_RS02065 0.37 +0.2 393,359 - MMJJ_RS02065 0.37 -0.9 393,360 + MMJJ_RS02065 0.37 -0.6 393,365 + MMJJ_RS02065 0.38 -2.8 393,383 - MMJJ_RS02065 0.39 +3.4 393,393 - MMJJ_RS02065 0.39 +3.4 393,393 - MMJJ_RS02065 0.39 +1.3 393,397 + MMJJ_RS02065 0.40 +1.5 393,422 + MMJJ_RS02065 0.41 -2.5 393,426 - MMJJ_RS02065 0.41 -1.6 393,469 - MMJJ_RS02065 0.44 +2.9 393,494 + MMJJ_RS02065 0.46 +2.7 393,505 - MMJJ_RS02065 0.46 +2.2 393,506 + MMJJ_RS02065 0.47 +1.4 393,508 - MMJJ_RS02065 0.47 -3.0 393,508 - MMJJ_RS02065 0.47 -2.7 393,509 + MMJJ_RS02065 0.47 +3.0 393,510 - MMJJ_RS02065 0.47 -2.0 393,510 - MMJJ_RS02065 0.47 +0.8 393,510 - MMJJ_RS02065 0.47 +1.8 393,510 - MMJJ_RS02065 0.47 +1.6 393,511 + MMJJ_RS02065 0.47 +2.2 393,511 + MMJJ_RS02065 0.47 +0.4 393,511 + MMJJ_RS02065 0.47 +1.5 393,511 - MMJJ_RS02065 0.47 +2.3 393,514 + MMJJ_RS02065 0.47 -1.6 393,516 + MMJJ_RS02065 0.47 -1.6 393,516 + MMJJ_RS02065 0.47 -2.7 393,560 - MMJJ_RS02065 0.50 +0.1 393,561 + MMJJ_RS02065 0.50 +0.6 393,561 + MMJJ_RS02065 0.50 -0.1 393,563 + -0.8 393,563 + MMJJ_RS02065 0.50 -0.2 393,564 - MMJJ_RS02065 0.50 -0.4 393,565 + MMJJ_RS02065 0.50 -2.0 393,565 + MMJJ_RS02065 0.50 +1.5 393,620 - MMJJ_RS02065 0.54 -0.4 393,658 + MMJJ_RS02065 0.56 +0.2 393,658 + MMJJ_RS02065 0.56 -1.3 393,658 + MMJJ_RS02065 0.56 +1.2
Or see this region's nucleotide sequence