Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01980 and MMJJ_RS01985 are separated by 26 nucleotides MMJJ_RS01985 and MMJJ_RS01990 are separated by 4 nucleotides MMJJ_RS01990 and MMJJ_RS01995 are separated by 422 nucleotides
MMJJ_RS01980: MMJJ_RS01980 - cation:proton antiporter, at 378,405 to 379,574
_RS01980
MMJJ_RS01985: MMJJ_RS01985 - endonuclease III, at 379,601 to 380,299
_RS01985
MMJJ_RS01990: MMJJ_RS01990 - universal stress protein, at 380,304 to 380,741
_RS01990
MMJJ_RS01995: MMJJ_RS01995 - valine--tRNA ligase, at 381,164 to 383,824
_RS01995
Position (kb) 380
381 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 379.456 kb on - strand, within MMJJ_RS01980 at 379.493 kb on + strand at 379.501 kb on - strand at 379.525 kb on + strand at 379.525 kb on + strand at 379.525 kb on + strand at 379.568 kb on + strand at 379.590 kb on + strand at 379.607 kb on - strand at 379.607 kb on - strand at 379.608 kb on + strand at 379.641 kb on - strand at 379.686 kb on - strand, within MMJJ_RS01985 at 379.687 kb on + strand, within MMJJ_RS01985 at 379.687 kb on + strand, within MMJJ_RS01985 at 379.696 kb on - strand, within MMJJ_RS01985 at 379.697 kb on + strand at 379.697 kb on + strand, within MMJJ_RS01985 at 379.697 kb on + strand, within MMJJ_RS01985 at 379.719 kb on - strand, within MMJJ_RS01985 at 379.738 kb on - strand, within MMJJ_RS01985 at 379.739 kb on + strand, within MMJJ_RS01985 at 379.743 kb on + strand, within MMJJ_RS01985 at 379.743 kb on + strand, within MMJJ_RS01985 at 379.743 kb on + strand, within MMJJ_RS01985 at 379.797 kb on - strand, within MMJJ_RS01985 at 379.845 kb on - strand, within MMJJ_RS01985 at 379.855 kb on + strand, within MMJJ_RS01985 at 379.858 kb on + strand, within MMJJ_RS01985 at 379.863 kb on - strand, within MMJJ_RS01985 at 379.864 kb on + strand, within MMJJ_RS01985 at 379.864 kb on + strand, within MMJJ_RS01985 at 379.882 kb on - strand, within MMJJ_RS01985 at 379.882 kb on - strand, within MMJJ_RS01985 at 379.882 kb on - strand, within MMJJ_RS01985 at 379.883 kb on + strand, within MMJJ_RS01985 at 379.883 kb on + strand, within MMJJ_RS01985 at 379.902 kb on - strand, within MMJJ_RS01985 at 379.954 kb on + strand, within MMJJ_RS01985 at 379.983 kb on - strand, within MMJJ_RS01985 at 380.019 kb on - strand, within MMJJ_RS01985 at 380.060 kb on - strand, within MMJJ_RS01985 at 380.061 kb on + strand, within MMJJ_RS01985 at 380.061 kb on + strand, within MMJJ_RS01985 at 380.061 kb on + strand, within MMJJ_RS01985 at 380.068 kb on - strand, within MMJJ_RS01985 at 380.092 kb on - strand, within MMJJ_RS01985 at 380.092 kb on - strand, within MMJJ_RS01985 at 380.093 kb on + strand, within MMJJ_RS01985 at 380.093 kb on + strand, within MMJJ_RS01985 at 380.096 kb on - strand at 380.096 kb on - strand, within MMJJ_RS01985 at 380.096 kb on - strand, within MMJJ_RS01985 at 380.097 kb on + strand, within MMJJ_RS01985 at 380.097 kb on + strand, within MMJJ_RS01985 at 380.098 kb on - strand, within MMJJ_RS01985 at 380.098 kb on - strand, within MMJJ_RS01985 at 380.128 kb on + strand, within MMJJ_RS01985 at 380.199 kb on - strand, within MMJJ_RS01985 at 380.200 kb on + strand, within MMJJ_RS01985 at 380.200 kb on + strand, within MMJJ_RS01985 at 380.243 kb on - strand at 380.243 kb on - strand at 380.284 kb on + strand at 380.290 kb on + strand at 380.297 kb on - strand at 380.297 kb on - strand at 380.298 kb on + strand at 380.303 kb on + strand at 380.328 kb on - strand at 380.328 kb on - strand at 380.379 kb on - strand, within MMJJ_RS01990 at 380.409 kb on + strand, within MMJJ_RS01990 at 380.421 kb on - strand, within MMJJ_RS01990 at 380.436 kb on + strand, within MMJJ_RS01990 at 380.436 kb on + strand, within MMJJ_RS01990 at 380.625 kb on - strand, within MMJJ_RS01990 at 380.625 kb on - strand, within MMJJ_RS01990 at 380.626 kb on + strand, within MMJJ_RS01990 at 380.629 kb on - strand, within MMJJ_RS01990 at 380.691 kb on - strand, within MMJJ_RS01990 at 380.692 kb on + strand, within MMJJ_RS01990 at 380.692 kb on + strand, within MMJJ_RS01990 at 380.721 kb on + strand at 380.732 kb on - strand at 380.735 kb on + strand at 380.758 kb on + strand at 380.766 kb on - strand at 380.767 kb on + strand at 380.767 kb on + strand at 380.767 kb on + strand at 380.773 kb on + strand at 380.784 kb on - strand at 380.785 kb on + strand at 380.785 kb on + strand at 380.786 kb on - strand at 380.786 kb on - strand at 380.786 kb on - strand at 380.786 kb on - strand at 380.787 kb on + strand at 380.787 kb on + strand at 380.787 kb on + strand at 380.787 kb on + strand at 380.788 kb on - strand at 380.789 kb on + strand at 380.789 kb on + strand at 380.789 kb on + strand at 380.791 kb on - strand at 380.791 kb on - strand at 380.792 kb on + strand at 380.792 kb on + strand at 380.794 kb on - strand at 380.798 kb on - strand at 380.798 kb on - strand at 380.799 kb on + strand at 380.811 kb on - strand at 380.825 kb on - strand at 380.826 kb on + strand at 380.844 kb on - strand at 380.844 kb on - strand at 380.845 kb on + strand at 380.848 kb on + strand at 380.853 kb on - strand at 380.854 kb on + strand at 380.872 kb on - strand at 380.875 kb on - strand at 380.875 kb on - strand at 380.875 kb on - strand at 380.875 kb on - strand at 380.875 kb on - strand at 380.876 kb on + strand at 380.876 kb on + strand at 380.876 kb on + strand at 380.876 kb on + strand at 380.877 kb on - strand at 380.877 kb on - strand at 380.878 kb on + strand at 380.878 kb on + strand at 380.878 kb on + strand at 380.878 kb on + strand at 380.879 kb on - strand at 380.880 kb on + strand at 380.880 kb on + strand at 380.887 kb on + strand at 380.890 kb on - strand at 380.890 kb on - strand at 380.890 kb on - strand at 380.894 kb on - strand at 380.894 kb on - strand at 380.904 kb on + strand at 380.904 kb on + strand at 380.912 kb on - strand at 380.913 kb on + strand at 380.914 kb on - strand at 380.915 kb on + strand at 380.915 kb on + strand at 380.915 kb on + strand at 380.921 kb on - strand at 380.930 kb on - strand at 380.992 kb on + strand at 380.992 kb on + strand at 381.014 kb on + strand at 381.029 kb on + strand at 381.034 kb on - strand at 381.035 kb on + strand at 381.099 kb on - strand at 381.100 kb on + strand at 381.584 kb on + strand, within MMJJ_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 379,456 - MMJJ_RS01980 0.90 -0.1 379,493 + +0.2 379,501 - -0.9 379,525 + -0.8 379,525 + -1.2 379,525 + +1.4 379,568 + -2.0 379,590 + +4.0 379,607 - +0.0 379,607 - +1.0 379,608 + -2.6 379,641 - -1.9 379,686 - MMJJ_RS01985 0.12 -2.3 379,687 + MMJJ_RS01985 0.12 -0.0 379,687 + MMJJ_RS01985 0.12 -0.2 379,696 - MMJJ_RS01985 0.14 +1.0 379,697 + +1.2 379,697 + MMJJ_RS01985 0.14 -1.7 379,697 + MMJJ_RS01985 0.14 -0.9 379,719 - MMJJ_RS01985 0.17 -1.8 379,738 - MMJJ_RS01985 0.20 +1.1 379,739 + MMJJ_RS01985 0.20 +2.7 379,743 + MMJJ_RS01985 0.20 -1.6 379,743 + MMJJ_RS01985 0.20 -0.5 379,743 + MMJJ_RS01985 0.20 -2.1 379,797 - MMJJ_RS01985 0.28 -0.4 379,845 - MMJJ_RS01985 0.35 -1.8 379,855 + MMJJ_RS01985 0.36 +2.7 379,858 + MMJJ_RS01985 0.37 -3.8 379,863 - MMJJ_RS01985 0.37 -2.1 379,864 + MMJJ_RS01985 0.38 +2.0 379,864 + MMJJ_RS01985 0.38 +1.0 379,882 - MMJJ_RS01985 0.40 +2.8 379,882 - MMJJ_RS01985 0.40 -2.6 379,882 - MMJJ_RS01985 0.40 -0.0 379,883 + MMJJ_RS01985 0.40 +0.1 379,883 + MMJJ_RS01985 0.40 -2.0 379,902 - MMJJ_RS01985 0.43 +4.0 379,954 + MMJJ_RS01985 0.51 +2.8 379,983 - MMJJ_RS01985 0.55 -2.2 380,019 - MMJJ_RS01985 0.60 +1.8 380,060 - MMJJ_RS01985 0.66 -2.1 380,061 + MMJJ_RS01985 0.66 +3.6 380,061 + MMJJ_RS01985 0.66 -2.1 380,061 + MMJJ_RS01985 0.66 -0.8 380,068 - MMJJ_RS01985 0.67 +1.0 380,092 - MMJJ_RS01985 0.70 +0.2 380,092 - MMJJ_RS01985 0.70 -0.2 380,093 + MMJJ_RS01985 0.70 +0.1 380,093 + MMJJ_RS01985 0.70 +1.9 380,096 - -0.4 380,096 - MMJJ_RS01985 0.71 +1.3 380,096 - MMJJ_RS01985 0.71 +2.5 380,097 + MMJJ_RS01985 0.71 -2.7 380,097 + MMJJ_RS01985 0.71 -0.7 380,098 - MMJJ_RS01985 0.71 +0.1 380,098 - MMJJ_RS01985 0.71 +6.0 380,128 + MMJJ_RS01985 0.75 +2.8 380,199 - MMJJ_RS01985 0.86 -2.6 380,200 + MMJJ_RS01985 0.86 -2.4 380,200 + MMJJ_RS01985 0.86 -2.7 380,243 - -1.6 380,243 - +2.1 380,284 + -0.2 380,290 + +2.1 380,297 - +0.9 380,297 - -2.0 380,298 + -1.3 380,303 + -2.1 380,328 - +2.4 380,328 - +0.6 380,379 - MMJJ_RS01990 0.17 +3.0 380,409 + MMJJ_RS01990 0.24 -0.2 380,421 - MMJJ_RS01990 0.27 -2.4 380,436 + MMJJ_RS01990 0.30 +1.3 380,436 + MMJJ_RS01990 0.30 +1.9 380,625 - MMJJ_RS01990 0.73 -2.0 380,625 - MMJJ_RS01990 0.73 +3.1 380,626 + MMJJ_RS01990 0.74 +5.3 380,629 - MMJJ_RS01990 0.74 -1.5 380,691 - MMJJ_RS01990 0.88 +0.2 380,692 + MMJJ_RS01990 0.89 +2.6 380,692 + MMJJ_RS01990 0.89 -0.8 380,721 + +2.1 380,732 - +2.2 380,735 + +1.7 380,758 + -0.2 380,766 - -1.6 380,767 + -3.5 380,767 + +1.2 380,767 + -1.6 380,773 + +0.5 380,784 - +0.4 380,785 + +2.7 380,785 + -1.2 380,786 - -2.3 380,786 - -0.3 380,786 - +2.2 380,786 - +1.8 380,787 + -2.9 380,787 + +1.2 380,787 + +1.8 380,787 + -1.4 380,788 - +1.2 380,789 + +3.3 380,789 + -1.8 380,789 + -2.7 380,791 - -0.9 380,791 - +4.4 380,792 + -2.3 380,792 + +2.3 380,794 - -1.9 380,798 - -0.1 380,798 - -2.4 380,799 + +1.5 380,811 - +2.3 380,825 - +0.4 380,826 + +0.9 380,844 - +1.5 380,844 - +0.6 380,845 + -1.5 380,848 + -0.3 380,853 - +0.5 380,854 + +1.7 380,872 - +0.8 380,875 - +2.2 380,875 - -5.1 380,875 - -2.0 380,875 - -1.8 380,875 - +1.6 380,876 + -1.3 380,876 + -2.0 380,876 + +1.2 380,876 + +2.1 380,877 - -0.5 380,877 - +0.2 380,878 + +0.2 380,878 + +2.4 380,878 + +1.8 380,878 + +2.1 380,879 - -1.3 380,880 + -3.1 380,880 + +1.2 380,887 + -1.0 380,890 - -0.9 380,890 - +3.8 380,890 - +1.9 380,894 - +3.4 380,894 - +0.0 380,904 + -0.4 380,904 + -2.8 380,912 - +1.4 380,913 + +0.3 380,914 - -0.6 380,915 + +2.8 380,915 + -3.9 380,915 + -0.4 380,921 - -1.4 380,930 - -1.1 380,992 + -1.1 380,992 + -0.8 381,014 + -0.8 381,029 + +0.8 381,034 - -1.6 381,035 + -0.8 381,099 - -1.6 381,100 + -0.4 381,584 + MMJJ_RS01995 0.16 +0.2
Or see this region's nucleotide sequence