Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01910 and MMJJ_RS01915 are separated by 34 nucleotides MMJJ_RS01915 and MMJJ_RS01920 are separated by 4 nucleotides MMJJ_RS01920 and MMJJ_RS01925 are separated by 157 nucleotides MMJJ_RS01925 and MMJJ_RS01930 are separated by 17 nucleotides
MMJJ_RS01910: MMJJ_RS01910 - class III signal peptide-containing protein, at 365,935 to 366,618
_RS01910
MMJJ_RS01915: MMJJ_RS01915 - precorrin-6A reductase, at 366,653 to 367,399
_RS01915
MMJJ_RS01920: MMJJ_RS01920 - phosphoglycerate mutase, at 367,404 to 368,690
_RS01920
MMJJ_RS01925: MMJJ_RS01925 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 368,848 to 369,540
_RS01925
MMJJ_RS01930: MMJJ_RS01930 - Pre-mRNA processing ribonucleoprotein, at 369,558 to 370,988
_RS01930
Position (kb) 367
368
369 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 366.440 kb on - strand, within MMJJ_RS01910 at 366.445 kb on - strand, within MMJJ_RS01910 at 366.446 kb on + strand, within MMJJ_RS01910 at 366.491 kb on + strand, within MMJJ_RS01910 at 366.494 kb on - strand, within MMJJ_RS01910 at 366.495 kb on + strand, within MMJJ_RS01910 at 366.515 kb on - strand, within MMJJ_RS01910 at 366.516 kb on + strand, within MMJJ_RS01910 at 366.521 kb on - strand, within MMJJ_RS01910 at 366.522 kb on + strand, within MMJJ_RS01910 at 366.559 kb on + strand at 366.568 kb on + strand at 366.583 kb on + strand at 366.584 kb on - strand at 366.584 kb on - strand at 366.585 kb on + strand at 366.598 kb on - strand at 366.598 kb on - strand at 366.600 kb on - strand at 366.600 kb on - strand at 366.600 kb on - strand at 366.601 kb on + strand at 366.601 kb on + strand at 366.623 kb on + strand at 366.625 kb on - strand at 366.626 kb on + strand at 366.660 kb on - strand at 366.660 kb on - strand at 366.661 kb on + strand at 366.680 kb on + strand at 366.695 kb on + strand at 366.796 kb on + strand, within MMJJ_RS01915 at 366.815 kb on - strand, within MMJJ_RS01915 at 366.816 kb on + strand, within MMJJ_RS01915 at 366.816 kb on + strand, within MMJJ_RS01915 at 366.820 kb on - strand, within MMJJ_RS01915 at 366.821 kb on + strand, within MMJJ_RS01915 at 366.938 kb on - strand, within MMJJ_RS01915 at 366.939 kb on + strand, within MMJJ_RS01915 at 366.984 kb on + strand, within MMJJ_RS01915 at 367.015 kb on + strand, within MMJJ_RS01915 at 367.047 kb on + strand, within MMJJ_RS01915 at 367.087 kb on - strand, within MMJJ_RS01915 at 367.116 kb on - strand, within MMJJ_RS01915 at 367.150 kb on + strand, within MMJJ_RS01915 at 367.212 kb on - strand, within MMJJ_RS01915 at 367.215 kb on - strand, within MMJJ_RS01915 at 367.225 kb on - strand, within MMJJ_RS01915 at 367.226 kb on + strand, within MMJJ_RS01915 at 367.236 kb on - strand, within MMJJ_RS01915 at 367.237 kb on + strand, within MMJJ_RS01915 at 367.237 kb on + strand, within MMJJ_RS01915 at 367.322 kb on + strand, within MMJJ_RS01915 at 367.323 kb on - strand, within MMJJ_RS01915 at 367.375 kb on + strand at 367.382 kb on - strand at 367.382 kb on - strand at 367.397 kb on - strand at 367.402 kb on + strand at 367.411 kb on + strand at 367.419 kb on - strand at 367.419 kb on - strand at 367.419 kb on - strand at 367.419 kb on - strand at 367.420 kb on + strand at 367.420 kb on + strand at 367.420 kb on + strand at 367.420 kb on + strand at 367.420 kb on + strand at 367.420 kb on + strand at 367.421 kb on - strand at 367.441 kb on - strand at 367.474 kb on - strand at 367.475 kb on + strand at 367.476 kb on - strand at 367.476 kb on - strand at 367.477 kb on + strand at 367.477 kb on + strand at 367.480 kb on + strand at 367.550 kb on + strand, within MMJJ_RS01920 at 367.577 kb on - strand, within MMJJ_RS01920 at 367.577 kb on - strand, within MMJJ_RS01920 at 367.608 kb on - strand, within MMJJ_RS01920 at 367.608 kb on - strand, within MMJJ_RS01920 at 367.678 kb on + strand, within MMJJ_RS01920 at 367.678 kb on + strand, within MMJJ_RS01920 at 367.681 kb on + strand, within MMJJ_RS01920 at 367.686 kb on - strand, within MMJJ_RS01920 at 367.686 kb on - strand, within MMJJ_RS01920 at 367.686 kb on - strand, within MMJJ_RS01920 at 367.686 kb on - strand, within MMJJ_RS01920 at 367.687 kb on + strand, within MMJJ_RS01920 at 367.695 kb on - strand, within MMJJ_RS01920 at 367.704 kb on + strand, within MMJJ_RS01920 at 367.734 kb on - strand, within MMJJ_RS01920 at 367.738 kb on + strand, within MMJJ_RS01920 at 367.798 kb on - strand, within MMJJ_RS01920 at 367.798 kb on - strand, within MMJJ_RS01920 at 367.798 kb on - strand, within MMJJ_RS01920 at 367.799 kb on + strand, within MMJJ_RS01920 at 367.799 kb on + strand, within MMJJ_RS01920 at 367.799 kb on + strand, within MMJJ_RS01920 at 367.799 kb on + strand, within MMJJ_RS01920 at 367.804 kb on + strand, within MMJJ_RS01920 at 367.804 kb on + strand, within MMJJ_RS01920 at 367.808 kb on + strand, within MMJJ_RS01920 at 367.810 kb on - strand, within MMJJ_RS01920 at 367.810 kb on - strand, within MMJJ_RS01920 at 367.811 kb on + strand, within MMJJ_RS01920 at 367.815 kb on + strand, within MMJJ_RS01920 at 367.863 kb on + strand, within MMJJ_RS01920 at 367.866 kb on - strand, within MMJJ_RS01920 at 367.866 kb on - strand, within MMJJ_RS01920 at 367.867 kb on + strand, within MMJJ_RS01920 at 367.867 kb on + strand, within MMJJ_RS01920 at 367.870 kb on - strand, within MMJJ_RS01920 at 367.881 kb on - strand, within MMJJ_RS01920 at 367.910 kb on - strand, within MMJJ_RS01920 at 367.936 kb on + strand, within MMJJ_RS01920 at 367.943 kb on + strand, within MMJJ_RS01920 at 367.965 kb on + strand, within MMJJ_RS01920 at 368.016 kb on + strand, within MMJJ_RS01920 at 368.016 kb on + strand, within MMJJ_RS01920 at 368.037 kb on + strand, within MMJJ_RS01920 at 368.117 kb on - strand, within MMJJ_RS01920 at 368.117 kb on - strand, within MMJJ_RS01920 at 368.118 kb on + strand, within MMJJ_RS01920 at 368.139 kb on - strand, within MMJJ_RS01920 at 368.140 kb on + strand, within MMJJ_RS01920 at 368.140 kb on + strand, within MMJJ_RS01920 at 368.167 kb on + strand at 368.167 kb on + strand, within MMJJ_RS01920 at 368.228 kb on - strand, within MMJJ_RS01920 at 368.307 kb on + strand, within MMJJ_RS01920 at 368.333 kb on - strand, within MMJJ_RS01920 at 368.333 kb on - strand, within MMJJ_RS01920 at 368.357 kb on - strand, within MMJJ_RS01920 at 368.362 kb on + strand, within MMJJ_RS01920 at 368.362 kb on + strand, within MMJJ_RS01920 at 368.377 kb on - strand, within MMJJ_RS01920 at 368.378 kb on + strand, within MMJJ_RS01920 at 368.378 kb on + strand, within MMJJ_RS01920 at 368.378 kb on + strand, within MMJJ_RS01920 at 368.378 kb on + strand, within MMJJ_RS01920 at 368.388 kb on - strand, within MMJJ_RS01920 at 368.416 kb on - strand, within MMJJ_RS01920 at 368.417 kb on + strand, within MMJJ_RS01920 at 368.432 kb on - strand, within MMJJ_RS01920 at 368.470 kb on + strand at 368.470 kb on + strand, within MMJJ_RS01920 at 368.511 kb on - strand, within MMJJ_RS01920 at 368.556 kb on - strand, within MMJJ_RS01920 at 368.617 kb on + strand at 368.704 kb on + strand at 368.707 kb on - strand at 368.708 kb on + strand at 368.708 kb on + strand at 368.711 kb on + strand at 368.719 kb on - strand at 368.720 kb on + strand at 368.720 kb on + strand at 368.729 kb on + strand at 368.729 kb on + strand at 368.729 kb on + strand at 368.736 kb on - strand at 368.737 kb on + strand at 368.740 kb on + strand at 368.748 kb on - strand at 368.750 kb on - strand at 368.750 kb on - strand at 368.751 kb on + strand at 368.751 kb on + strand at 368.751 kb on + strand at 368.752 kb on - strand at 368.752 kb on - strand at 368.752 kb on - strand at 368.753 kb on + strand at 368.758 kb on - strand at 368.765 kb on + strand at 368.784 kb on - strand at 368.784 kb on - strand at 368.785 kb on + strand at 368.786 kb on - strand at 368.787 kb on + strand at 368.787 kb on + strand at 368.788 kb on - strand at 368.788 kb on - strand at 368.788 kb on - strand at 368.788 kb on - strand at 368.789 kb on + strand at 368.789 kb on + strand at 368.807 kb on - strand at 368.823 kb on + strand at 368.828 kb on - strand at 368.836 kb on - strand at 368.836 kb on - strand at 368.840 kb on + strand at 368.842 kb on + strand at 368.849 kb on - strand at 368.849 kb on - strand at 368.985 kb on - strand, within MMJJ_RS01925 at 369.010 kb on + strand, within MMJJ_RS01925 at 369.237 kb on + strand, within MMJJ_RS01925 at 369.258 kb on - strand, within MMJJ_RS01925 at 369.280 kb on + strand, within MMJJ_RS01925 at 369.388 kb on - strand, within MMJJ_RS01925 at 369.393 kb on - strand, within MMJJ_RS01925 at 369.395 kb on - strand, within MMJJ_RS01925 at 369.395 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.400 kb on - strand, within MMJJ_RS01925 at 369.401 kb on + strand, within MMJJ_RS01925 at 369.402 kb on - strand, within MMJJ_RS01925 at 369.414 kb on + strand, within MMJJ_RS01925 at 369.414 kb on + strand, within MMJJ_RS01925 at 369.415 kb on - strand, within MMJJ_RS01925 at 369.415 kb on - strand, within MMJJ_RS01925 at 369.418 kb on - strand, within MMJJ_RS01925 at 369.451 kb on - strand, within MMJJ_RS01925 at 369.475 kb on + strand at 369.475 kb on + strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.502 kb on - strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.503 kb on + strand at 369.559 kb on - strand at 369.560 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 366,440 - MMJJ_RS01910 0.74 -0.4 366,445 - MMJJ_RS01910 0.75 +1.8 366,446 + MMJJ_RS01910 0.75 -0.8 366,491 + MMJJ_RS01910 0.81 -3.7 366,494 - MMJJ_RS01910 0.82 +2.5 366,495 + MMJJ_RS01910 0.82 -2.1 366,515 - MMJJ_RS01910 0.85 +0.1 366,516 + MMJJ_RS01910 0.85 +3.4 366,521 - MMJJ_RS01910 0.86 -1.0 366,522 + MMJJ_RS01910 0.86 -3.1 366,559 + -0.1 366,568 + +2.0 366,583 + -1.2 366,584 - -4.3 366,584 - +0.4 366,585 + +0.5 366,598 - +0.0 366,598 - +2.3 366,600 - +0.3 366,600 - +0.3 366,600 - -2.5 366,601 + -0.2 366,601 + -1.7 366,623 + -1.7 366,625 - +0.2 366,626 + -1.2 366,660 - -0.8 366,660 - +2.0 366,661 + +0.2 366,680 + -1.2 366,695 + +3.2 366,796 + MMJJ_RS01915 0.19 -2.8 366,815 - MMJJ_RS01915 0.22 -2.0 366,816 + MMJJ_RS01915 0.22 +2.1 366,816 + MMJJ_RS01915 0.22 +2.6 366,820 - MMJJ_RS01915 0.22 +1.0 366,821 + MMJJ_RS01915 0.22 +3.7 366,938 - MMJJ_RS01915 0.38 +3.3 366,939 + MMJJ_RS01915 0.38 +3.5 366,984 + MMJJ_RS01915 0.44 +2.0 367,015 + MMJJ_RS01915 0.48 +1.8 367,047 + MMJJ_RS01915 0.53 -1.8 367,087 - MMJJ_RS01915 0.58 +2.1 367,116 - MMJJ_RS01915 0.62 +1.6 367,150 + MMJJ_RS01915 0.67 +0.8 367,212 - MMJJ_RS01915 0.75 -0.5 367,215 - MMJJ_RS01915 0.75 -0.3 367,225 - MMJJ_RS01915 0.77 +1.9 367,226 + MMJJ_RS01915 0.77 +2.8 367,236 - MMJJ_RS01915 0.78 +3.0 367,237 + MMJJ_RS01915 0.78 +1.2 367,237 + MMJJ_RS01915 0.78 +2.9 367,322 + MMJJ_RS01915 0.90 +4.8 367,323 - MMJJ_RS01915 0.90 +0.6 367,375 + -0.2 367,382 - +1.8 367,382 - +1.6 367,397 - +0.4 367,402 + +0.5 367,411 + -0.4 367,419 - -0.7 367,419 - +2.1 367,419 - +1.4 367,419 - -1.5 367,420 + -0.6 367,420 + -0.5 367,420 + -0.9 367,420 + -1.3 367,420 + -2.8 367,420 + -0.7 367,421 - +1.9 367,441 - +2.8 367,474 - -2.3 367,475 + -0.1 367,476 - -0.4 367,476 - +1.2 367,477 + +1.2 367,477 + +3.1 367,480 + -0.8 367,550 + MMJJ_RS01920 0.11 -0.4 367,577 - MMJJ_RS01920 0.13 +3.7 367,577 - MMJJ_RS01920 0.13 +1.8 367,608 - MMJJ_RS01920 0.16 +2.0 367,608 - MMJJ_RS01920 0.16 -2.0 367,678 + MMJJ_RS01920 0.21 +1.8 367,678 + MMJJ_RS01920 0.21 +5.4 367,681 + MMJJ_RS01920 0.22 +4.0 367,686 - MMJJ_RS01920 0.22 -0.4 367,686 - MMJJ_RS01920 0.22 -1.0 367,686 - MMJJ_RS01920 0.22 +1.6 367,686 - MMJJ_RS01920 0.22 -2.0 367,687 + MMJJ_RS01920 0.22 +0.2 367,695 - MMJJ_RS01920 0.23 -3.6 367,704 + MMJJ_RS01920 0.23 +1.0 367,734 - MMJJ_RS01920 0.26 +0.6 367,738 + MMJJ_RS01920 0.26 +1.8 367,798 - MMJJ_RS01920 0.31 -1.0 367,798 - MMJJ_RS01920 0.31 -2.9 367,798 - MMJJ_RS01920 0.31 +2.3 367,799 + MMJJ_RS01920 0.31 -0.7 367,799 + MMJJ_RS01920 0.31 +2.9 367,799 + MMJJ_RS01920 0.31 +2.5 367,799 + MMJJ_RS01920 0.31 +1.3 367,804 + MMJJ_RS01920 0.31 +4.8 367,804 + MMJJ_RS01920 0.31 -1.8 367,808 + MMJJ_RS01920 0.31 -0.3 367,810 - MMJJ_RS01920 0.32 -2.4 367,810 - MMJJ_RS01920 0.32 -1.4 367,811 + MMJJ_RS01920 0.32 +1.9 367,815 + MMJJ_RS01920 0.32 +4.2 367,863 + MMJJ_RS01920 0.36 -0.3 367,866 - MMJJ_RS01920 0.36 -4.5 367,866 - MMJJ_RS01920 0.36 +0.2 367,867 + MMJJ_RS01920 0.36 +3.4 367,867 + MMJJ_RS01920 0.36 -1.2 367,870 - MMJJ_RS01920 0.36 +2.8 367,881 - MMJJ_RS01920 0.37 -2.5 367,910 - MMJJ_RS01920 0.39 -2.0 367,936 + MMJJ_RS01920 0.41 -0.4 367,943 + MMJJ_RS01920 0.42 +1.6 367,965 + MMJJ_RS01920 0.44 -2.5 368,016 + MMJJ_RS01920 0.48 +0.5 368,016 + MMJJ_RS01920 0.48 -0.4 368,037 + MMJJ_RS01920 0.49 +4.0 368,117 - MMJJ_RS01920 0.55 +0.3 368,117 - MMJJ_RS01920 0.55 -3.8 368,118 + MMJJ_RS01920 0.55 -2.1 368,139 - MMJJ_RS01920 0.57 -1.0 368,140 + MMJJ_RS01920 0.57 +1.3 368,140 + MMJJ_RS01920 0.57 +1.7 368,167 + +1.2 368,167 + MMJJ_RS01920 0.59 -2.8 368,228 - MMJJ_RS01920 0.64 -3.3 368,307 + MMJJ_RS01920 0.70 +1.7 368,333 - MMJJ_RS01920 0.72 -1.4 368,333 - MMJJ_RS01920 0.72 +0.4 368,357 - MMJJ_RS01920 0.74 -1.1 368,362 + MMJJ_RS01920 0.74 +3.6 368,362 + MMJJ_RS01920 0.74 -2.5 368,377 - MMJJ_RS01920 0.76 -0.3 368,378 + MMJJ_RS01920 0.76 +0.2 368,378 + MMJJ_RS01920 0.76 +4.0 368,378 + MMJJ_RS01920 0.76 -0.4 368,378 + MMJJ_RS01920 0.76 -0.6 368,388 - MMJJ_RS01920 0.76 -1.0 368,416 - MMJJ_RS01920 0.79 -2.9 368,417 + MMJJ_RS01920 0.79 -2.2 368,432 - MMJJ_RS01920 0.80 +2.5 368,470 + +0.2 368,470 + MMJJ_RS01920 0.83 +2.2 368,511 - MMJJ_RS01920 0.86 +1.5 368,556 - MMJJ_RS01920 0.90 +4.3 368,617 + +0.9 368,704 + +0.7 368,707 - -1.4 368,708 + -2.4 368,708 + -1.2 368,711 + -1.0 368,719 - +1.1 368,720 + -1.8 368,720 + +3.0 368,729 + +1.8 368,729 + +5.1 368,729 + -2.0 368,736 - -2.1 368,737 + +3.8 368,740 + +3.3 368,748 - +1.6 368,750 - -0.8 368,750 - -0.5 368,751 + +0.3 368,751 + +1.9 368,751 + -1.4 368,752 - -2.4 368,752 - +4.3 368,752 - +0.6 368,753 + -1.1 368,758 - -2.3 368,765 + -0.5 368,784 - +0.1 368,784 - -0.8 368,785 + +1.4 368,786 - -3.1 368,787 + -2.5 368,787 + +0.9 368,788 - +1.2 368,788 - -2.0 368,788 - +1.5 368,788 - +2.6 368,789 + +0.1 368,789 + +0.2 368,807 - -2.5 368,823 + -1.7 368,828 - -0.9 368,836 - -3.8 368,836 - +1.3 368,840 + -2.3 368,842 + -1.6 368,849 - -1.6 368,849 - +1.4 368,985 - MMJJ_RS01925 0.20 -0.2 369,010 + MMJJ_RS01925 0.23 +1.9 369,237 + MMJJ_RS01925 0.56 -2.8 369,258 - MMJJ_RS01925 0.59 -3.6 369,280 + MMJJ_RS01925 0.62 -0.5 369,388 - MMJJ_RS01925 0.78 -0.3 369,393 - MMJJ_RS01925 0.79 -0.8 369,395 - MMJJ_RS01925 0.79 -2.8 369,395 - MMJJ_RS01925 0.79 +1.4 369,400 - MMJJ_RS01925 0.80 -0.2 369,400 - MMJJ_RS01925 0.80 -0.0 369,400 - MMJJ_RS01925 0.80 -2.3 369,400 - MMJJ_RS01925 0.80 -0.7 369,401 + MMJJ_RS01925 0.80 -2.3 369,402 - MMJJ_RS01925 0.80 +1.2 369,414 + MMJJ_RS01925 0.82 -1.8 369,414 + MMJJ_RS01925 0.82 -0.8 369,415 - MMJJ_RS01925 0.82 +2.3 369,415 - MMJJ_RS01925 0.82 -0.4 369,418 - MMJJ_RS01925 0.82 +0.3 369,451 - MMJJ_RS01925 0.87 -1.9 369,475 + -3.2 369,475 + +1.2 369,502 - -1.8 369,502 - -0.5 369,502 - +1.4 369,502 - +3.6 369,502 - -0.8 369,503 + -2.0 369,503 + -0.7 369,503 + -0.8 369,503 + +1.6 369,503 + -0.8 369,559 - +0.6 369,560 + -0.8
Or see this region's nucleotide sequence