Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01205 and MMJJ_RS01210 are separated by 74 nucleotides MMJJ_RS01210 and MMJJ_RS01215 are separated by 135 nucleotides
MMJJ_RS01205: MMJJ_RS01205 - DNA adenine methylase, at 231,336 to 232,256
_RS01205
MMJJ_RS01210: MMJJ_RS01210 - hypothetical protein, at 232,331 to 232,648
_RS01210
MMJJ_RS01215: MMJJ_RS01215 - MATE family efflux transporter, at 232,784 to 234,142
_RS01215
Position (kb) 232
233 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 231.402 kb on - strand at 231.431 kb on - strand, within MMJJ_RS01205 at 231.432 kb on + strand, within MMJJ_RS01205 at 231.442 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.476 kb on - strand, within MMJJ_RS01205 at 231.477 kb on + strand, within MMJJ_RS01205 at 231.494 kb on - strand, within MMJJ_RS01205 at 231.505 kb on + strand, within MMJJ_RS01205 at 231.505 kb on + strand, within MMJJ_RS01205 at 231.508 kb on - strand at 231.508 kb on - strand, within MMJJ_RS01205 at 231.508 kb on - strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.509 kb on + strand, within MMJJ_RS01205 at 231.534 kb on + strand, within MMJJ_RS01205 at 231.582 kb on + strand, within MMJJ_RS01205 at 231.582 kb on + strand, within MMJJ_RS01205 at 231.594 kb on + strand, within MMJJ_RS01205 at 231.599 kb on - strand, within MMJJ_RS01205 at 231.637 kb on - strand, within MMJJ_RS01205 at 231.638 kb on + strand, within MMJJ_RS01205 at 231.638 kb on + strand, within MMJJ_RS01205 at 231.639 kb on - strand, within MMJJ_RS01205 at 231.683 kb on - strand, within MMJJ_RS01205 at 231.685 kb on - strand, within MMJJ_RS01205 at 231.769 kb on - strand, within MMJJ_RS01205 at 231.770 kb on + strand, within MMJJ_RS01205 at 231.803 kb on - strand, within MMJJ_RS01205 at 231.813 kb on + strand, within MMJJ_RS01205 at 231.825 kb on + strand, within MMJJ_RS01205 at 231.891 kb on + strand, within MMJJ_RS01205 at 231.891 kb on + strand, within MMJJ_RS01205 at 231.916 kb on - strand, within MMJJ_RS01205 at 231.917 kb on + strand, within MMJJ_RS01205 at 231.927 kb on - strand, within MMJJ_RS01205 at 231.935 kb on + strand, within MMJJ_RS01205 at 231.937 kb on - strand, within MMJJ_RS01205 at 231.937 kb on - strand, within MMJJ_RS01205 at 231.938 kb on + strand, within MMJJ_RS01205 at 231.986 kb on - strand, within MMJJ_RS01205 at 232.006 kb on + strand, within MMJJ_RS01205 at 232.019 kb on - strand, within MMJJ_RS01205 at 232.034 kb on - strand, within MMJJ_RS01205 at 232.090 kb on - strand, within MMJJ_RS01205 at 232.275 kb on + strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.286 kb on + strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.287 kb on - strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.288 kb on + strand at 232.291 kb on - strand at 232.292 kb on + strand at 232.293 kb on - strand at 232.347 kb on + strand at 232.352 kb on - strand at 232.352 kb on - strand at 232.353 kb on + strand at 232.353 kb on + strand at 232.353 kb on + strand at 232.404 kb on + strand, within MMJJ_RS01210 at 232.404 kb on + strand, within MMJJ_RS01210 at 232.478 kb on - strand, within MMJJ_RS01210 at 232.479 kb on + strand, within MMJJ_RS01210 at 232.648 kb on - strand at 232.648 kb on - strand at 232.649 kb on + strand at 232.650 kb on - strand at 232.650 kb on - strand at 232.650 kb on - strand at 232.651 kb on + strand at 232.664 kb on - strand at 232.665 kb on + strand at 232.667 kb on + strand at 232.667 kb on + strand at 232.667 kb on + strand at 232.683 kb on + strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.701 kb on - strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.702 kb on + strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.703 kb on - strand at 232.704 kb on + strand at 232.704 kb on + strand at 232.704 kb on + strand at 232.705 kb on - strand at 232.705 kb on - strand at 232.705 kb on - strand at 232.705 kb on - strand at 232.706 kb on + strand at 232.706 kb on + strand at 232.706 kb on + strand at 232.706 kb on + strand at 232.712 kb on - strand at 232.722 kb on - strand at 232.724 kb on - strand at 232.725 kb on + strand at 232.823 kb on + strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.834 kb on + strand at 232.834 kb on + strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.838 kb on - strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.839 kb on + strand at 232.871 kb on + strand at 232.899 kb on - strand at 232.972 kb on - strand, within MMJJ_RS01215 at 232.973 kb on + strand, within MMJJ_RS01215 at 232.973 kb on + strand, within MMJJ_RS01215 at 233.013 kb on - strand, within MMJJ_RS01215 at 233.065 kb on + strand, within MMJJ_RS01215 at 233.065 kb on + strand, within MMJJ_RS01215 at 233.081 kb on - strand, within MMJJ_RS01215 at 233.081 kb on - strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.082 kb on + strand, within MMJJ_RS01215 at 233.086 kb on - strand, within MMJJ_RS01215 at 233.088 kb on - strand, within MMJJ_RS01215 at 233.107 kb on - strand, within MMJJ_RS01215 at 233.108 kb on + strand, within MMJJ_RS01215 at 233.127 kb on - strand, within MMJJ_RS01215 at 233.128 kb on + strand, within MMJJ_RS01215 at 233.130 kb on - strand, within MMJJ_RS01215 at 233.131 kb on + strand, within MMJJ_RS01215 at 233.175 kb on - strand, within MMJJ_RS01215 at 233.175 kb on - strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.176 kb on + strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.177 kb on - strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.178 kb on + strand, within MMJJ_RS01215 at 233.202 kb on - strand, within MMJJ_RS01215 at 233.254 kb on - strand, within MMJJ_RS01215 at 233.254 kb on - strand, within MMJJ_RS01215 at 233.254 kb on - strand, within MMJJ_RS01215 at 233.312 kb on + strand, within MMJJ_RS01215 at 233.318 kb on + strand, within MMJJ_RS01215 at 233.320 kb on + strand, within MMJJ_RS01215 at 233.327 kb on - strand, within MMJJ_RS01215 at 233.327 kb on - strand, within MMJJ_RS01215 at 233.329 kb on - strand, within MMJJ_RS01215 at 233.329 kb on - strand, within MMJJ_RS01215 at 233.330 kb on + strand, within MMJJ_RS01215 at 233.331 kb on - strand, within MMJJ_RS01215 at 233.331 kb on - strand, within MMJJ_RS01215 at 233.331 kb on - strand, within MMJJ_RS01215 at 233.332 kb on + strand, within MMJJ_RS01215 at 233.332 kb on + strand, within MMJJ_RS01215 at 233.337 kb on - strand, within MMJJ_RS01215 at 233.341 kb on - strand, within MMJJ_RS01215 at 233.342 kb on + strand, within MMJJ_RS01215 at 233.361 kb on - strand, within MMJJ_RS01215 at 233.416 kb on + strand, within MMJJ_RS01215 at 233.522 kb on + strand, within MMJJ_RS01215 at 233.554 kb on + strand, within MMJJ_RS01215 at 233.556 kb on - strand, within MMJJ_RS01215 at 233.616 kb on - strand, within MMJJ_RS01215 at 233.617 kb on + strand, within MMJJ_RS01215 at 233.619 kb on - strand, within MMJJ_RS01215 at 233.619 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.621 kb on - strand, within MMJJ_RS01215 at 233.622 kb on + strand, within MMJJ_RS01215 at 233.623 kb on - strand, within MMJJ_RS01215 at 233.623 kb on - strand, within MMJJ_RS01215 at 233.624 kb on + strand, within MMJJ_RS01215 at 233.648 kb on - strand, within MMJJ_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 231,402 - +1.2 231,431 - MMJJ_RS01205 0.10 +4.2 231,432 + MMJJ_RS01205 0.10 +0.1 231,442 - MMJJ_RS01205 0.12 -1.9 231,476 - MMJJ_RS01205 0.15 -2.9 231,476 - MMJJ_RS01205 0.15 +0.2 231,476 - MMJJ_RS01205 0.15 -0.0 231,477 + MMJJ_RS01205 0.15 -2.8 231,494 - MMJJ_RS01205 0.17 -1.6 231,505 + MMJJ_RS01205 0.18 -0.5 231,505 + MMJJ_RS01205 0.18 +0.5 231,508 - +1.1 231,508 - MMJJ_RS01205 0.19 +1.1 231,508 - MMJJ_RS01205 0.19 +0.5 231,509 + MMJJ_RS01205 0.19 +0.4 231,509 + MMJJ_RS01205 0.19 +0.1 231,509 + MMJJ_RS01205 0.19 -2.1 231,509 + MMJJ_RS01205 0.19 +3.6 231,509 + MMJJ_RS01205 0.19 +1.9 231,534 + MMJJ_RS01205 0.21 +1.4 231,582 + MMJJ_RS01205 0.27 +0.4 231,582 + MMJJ_RS01205 0.27 +0.7 231,594 + MMJJ_RS01205 0.28 +0.8 231,599 - MMJJ_RS01205 0.29 -1.5 231,637 - MMJJ_RS01205 0.33 +0.7 231,638 + MMJJ_RS01205 0.33 +1.0 231,638 + MMJJ_RS01205 0.33 -1.9 231,639 - MMJJ_RS01205 0.33 +0.1 231,683 - MMJJ_RS01205 0.38 -1.9 231,685 - MMJJ_RS01205 0.38 +1.3 231,769 - MMJJ_RS01205 0.47 -3.0 231,770 + MMJJ_RS01205 0.47 -0.1 231,803 - MMJJ_RS01205 0.51 -0.5 231,813 + MMJJ_RS01205 0.52 +1.3 231,825 + MMJJ_RS01205 0.53 -4.2 231,891 + MMJJ_RS01205 0.60 -0.4 231,891 + MMJJ_RS01205 0.60 -1.1 231,916 - MMJJ_RS01205 0.63 -0.6 231,917 + MMJJ_RS01205 0.63 -2.5 231,927 - MMJJ_RS01205 0.64 -1.4 231,935 + MMJJ_RS01205 0.65 -0.5 231,937 - MMJJ_RS01205 0.65 -0.2 231,937 - MMJJ_RS01205 0.65 +2.6 231,938 + MMJJ_RS01205 0.65 -1.8 231,986 - MMJJ_RS01205 0.71 -0.5 232,006 + MMJJ_RS01205 0.73 -2.3 232,019 - MMJJ_RS01205 0.74 -1.0 232,034 - MMJJ_RS01205 0.76 -0.1 232,090 - MMJJ_RS01205 0.82 +1.0 232,275 + -1.4 232,285 - +0.6 232,285 - -2.3 232,286 + +2.7 232,287 - -2.1 232,287 - +1.5 232,287 - -0.7 232,287 - -1.7 232,287 - -1.4 232,288 + +2.0 232,288 + +1.8 232,288 + +1.2 232,288 + +3.4 232,288 + +1.3 232,288 + -2.7 232,288 + +0.2 232,291 - -1.4 232,292 + +1.0 232,293 - +0.0 232,347 + -1.5 232,352 - +0.7 232,352 - +0.5 232,353 + +3.2 232,353 + +0.6 232,353 + -0.5 232,404 + MMJJ_RS01210 0.23 +4.1 232,404 + MMJJ_RS01210 0.23 -0.8 232,478 - MMJJ_RS01210 0.46 +1.7 232,479 + MMJJ_RS01210 0.47 -2.1 232,648 - -2.4 232,648 - +2.1 232,649 + -1.5 232,650 - +0.5 232,650 - +0.5 232,650 - +0.7 232,651 + -2.1 232,664 - +1.4 232,665 + -2.0 232,667 + +0.3 232,667 + +0.3 232,667 + -1.9 232,683 + -0.2 232,701 - -1.5 232,701 - +0.0 232,701 - -0.1 232,701 - +1.5 232,701 - -0.2 232,701 - -0.4 232,702 + +1.3 232,702 + +0.0 232,702 + +2.2 232,702 + -1.2 232,702 + +2.7 232,702 + -0.4 232,702 + +3.1 232,702 + +0.6 232,702 + +1.3 232,702 + -2.2 232,703 - +0.5 232,703 - +1.5 232,703 - -1.7 232,703 - +1.6 232,703 - -3.0 232,703 - +1.4 232,704 + +0.1 232,704 + -2.9 232,704 + -0.2 232,705 - +2.2 232,705 - +4.2 232,705 - -2.9 232,705 - +1.5 232,706 + +0.6 232,706 + -1.8 232,706 + -0.5 232,706 + -0.7 232,712 - +2.0 232,722 - -2.3 232,724 - -2.1 232,725 + +1.3 232,823 + +0.0 232,833 - -0.5 232,833 - -3.4 232,834 + +1.0 232,834 + +2.5 232,838 - +0.1 232,838 - -1.5 232,838 - -4.1 232,838 - -1.8 232,838 - +1.6 232,839 + -1.8 232,839 + +1.0 232,839 + -2.1 232,839 + +1.0 232,839 + +0.7 232,839 + +1.7 232,839 + -2.0 232,871 + +0.8 232,899 - +2.5 232,972 - MMJJ_RS01215 0.14 -0.5 232,973 + MMJJ_RS01215 0.14 +2.9 232,973 + MMJJ_RS01215 0.14 -1.8 233,013 - MMJJ_RS01215 0.17 -2.0 233,065 + MMJJ_RS01215 0.21 +0.6 233,065 + MMJJ_RS01215 0.21 -3.1 233,081 - MMJJ_RS01215 0.22 +0.6 233,081 - MMJJ_RS01215 0.22 +1.4 233,082 + MMJJ_RS01215 0.22 -1.8 233,082 + MMJJ_RS01215 0.22 +2.3 233,082 + MMJJ_RS01215 0.22 +0.5 233,082 + MMJJ_RS01215 0.22 -3.4 233,082 + MMJJ_RS01215 0.22 +3.0 233,086 - MMJJ_RS01215 0.22 -1.4 233,088 - MMJJ_RS01215 0.22 +1.7 233,107 - MMJJ_RS01215 0.24 -2.5 233,108 + MMJJ_RS01215 0.24 -2.8 233,127 - MMJJ_RS01215 0.25 -1.3 233,128 + MMJJ_RS01215 0.25 -2.7 233,130 - MMJJ_RS01215 0.25 +3.0 233,131 + MMJJ_RS01215 0.26 +1.7 233,175 - MMJJ_RS01215 0.29 +0.2 233,175 - MMJJ_RS01215 0.29 +1.8 233,176 + MMJJ_RS01215 0.29 -1.5 233,176 + MMJJ_RS01215 0.29 -0.7 233,176 + MMJJ_RS01215 0.29 -0.2 233,176 + MMJJ_RS01215 0.29 -0.2 233,177 - MMJJ_RS01215 0.29 +1.5 233,177 - MMJJ_RS01215 0.29 +2.2 233,177 - MMJJ_RS01215 0.29 -2.4 233,177 - MMJJ_RS01215 0.29 +0.8 233,177 - MMJJ_RS01215 0.29 -0.7 233,177 - MMJJ_RS01215 0.29 -0.6 233,177 - MMJJ_RS01215 0.29 +1.1 233,178 + MMJJ_RS01215 0.29 -1.7 233,178 + MMJJ_RS01215 0.29 +0.4 233,178 + MMJJ_RS01215 0.29 +0.6 233,178 + MMJJ_RS01215 0.29 +0.7 233,178 + MMJJ_RS01215 0.29 -1.0 233,178 + MMJJ_RS01215 0.29 -2.8 233,178 + MMJJ_RS01215 0.29 -0.8 233,202 - MMJJ_RS01215 0.31 +1.4 233,254 - MMJJ_RS01215 0.35 +2.3 233,254 - MMJJ_RS01215 0.35 +1.3 233,254 - MMJJ_RS01215 0.35 -0.9 233,312 + MMJJ_RS01215 0.39 -2.4 233,318 + MMJJ_RS01215 0.39 -2.7 233,320 + MMJJ_RS01215 0.39 -1.4 233,327 - MMJJ_RS01215 0.40 -1.7 233,327 - MMJJ_RS01215 0.40 +0.6 233,329 - MMJJ_RS01215 0.40 +1.0 233,329 - MMJJ_RS01215 0.40 +0.1 233,330 + MMJJ_RS01215 0.40 +0.8 233,331 - MMJJ_RS01215 0.40 +2.5 233,331 - MMJJ_RS01215 0.40 -0.8 233,331 - MMJJ_RS01215 0.40 +1.9 233,332 + MMJJ_RS01215 0.40 +0.2 233,332 + MMJJ_RS01215 0.40 -0.0 233,337 - MMJJ_RS01215 0.41 -1.4 233,341 - MMJJ_RS01215 0.41 +1.4 233,342 + MMJJ_RS01215 0.41 -0.1 233,361 - MMJJ_RS01215 0.42 +0.4 233,416 + MMJJ_RS01215 0.47 +3.0 233,522 + MMJJ_RS01215 0.54 +3.2 233,554 + MMJJ_RS01215 0.57 +1.3 233,556 - MMJJ_RS01215 0.57 -3.1 233,616 - MMJJ_RS01215 0.61 -1.3 233,617 + MMJJ_RS01215 0.61 -1.3 233,619 - MMJJ_RS01215 0.61 -1.6 233,619 - MMJJ_RS01215 0.61 -0.5 233,621 - MMJJ_RS01215 0.62 -2.9 233,621 - MMJJ_RS01215 0.62 +4.2 233,621 - MMJJ_RS01215 0.62 +2.0 233,621 - MMJJ_RS01215 0.62 -0.4 233,622 + MMJJ_RS01215 0.62 +0.6 233,623 - MMJJ_RS01215 0.62 -1.3 233,623 - MMJJ_RS01215 0.62 -1.4 233,624 + MMJJ_RS01215 0.62 -0.4 233,648 - MMJJ_RS01215 0.64 +2.4
Or see this region's nucleotide sequence