Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01200

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
229,796	+				-0.5
229,845	+				+0.4
229,850	-				+1.2
229,854	-				+0.8
229,855	+				+1.0
229,855	+				+2.9
229,868	-				+3.0
229,869	+				-2.8
229,930	-				-3.6
229,931	+				-2.5
230,736	+				-1.0
230,771	-				+1.0
230,953	-				+0.0
230,953	-		MMJJ_RS01200	0.77	-1.3
230,953	-		MMJJ_RS01200	0.77	+1.0
230,953	-		MMJJ_RS01200	0.77	+1.0
230,954	+		MMJJ_RS01200	0.77	+1.0
230,954	+		MMJJ_RS01200	0.77	-1.8
230,954	+		MMJJ_RS01200	0.77	+0.0
230,956	+		MMJJ_RS01200	0.78	-0.5
230,957	-		MMJJ_RS01200	0.78	-1.3
230,957	-		MMJJ_RS01200	0.78	-1.3
231,014	-				-1.3
231,043	+				-0.5
231,054	+				-1.3
231,064	+				-2.3
231,086	-				-0.8
231,087	+				+1.1
231,090	+				+1.9
231,092	+				-1.5
231,092	+				-0.0
231,092	+				-1.2
231,101	+				-3.5
231,101	+				+1.4
231,102	-				+0.5
231,103	+				-2.6
231,131	-				+4.6
231,136	-				-2.9
231,136	-				+2.7
231,136	-				-2.1
231,136	-				+0.1
231,136	-				-0.2
231,136	-				+2.0
231,136	-				+1.1
231,136	-				-3.0
231,136	-				+1.3
231,137	+				+0.3
231,137	+				-0.9
231,137	+				-1.5
231,137	+				+3.3
231,137	+				+0.2
231,137	+				-1.3
231,137	+				-2.1
231,137	+				-0.0
231,137	+				+2.0
231,150	+				-0.9
231,150	+				+0.9
231,150	+				+2.5
231,181	-		MMJJ_RS09335	0.26	-0.1
231,181	-		MMJJ_RS09335	0.26	-3.3
231,181	-		MMJJ_RS09335	0.26	+0.5
231,181	-		MMJJ_RS09335	0.26	-2.8
231,182	+		MMJJ_RS09335	0.26	-3.4
231,182	+		MMJJ_RS09335	0.26	+0.1
231,182	+		MMJJ_RS09335	0.26	-2.7
231,184	+		MMJJ_RS09335	0.27	+1.9
231,184	+		MMJJ_RS09335	0.27	+2.6
231,263	+		MMJJ_RS09335	0.74	-2.0
231,263	+				+1.1
231,268	+		MMJJ_RS09335	0.77	-0.3
231,306	+				-1.3
231,317	-				+0.9
231,318	+				-3.0
231,320	-				-2.7
231,330	-				-0.7
231,402	-				+1.2
231,431	-		MMJJ_RS01205	0.10	+4.2
231,432	+		MMJJ_RS01205	0.10	+0.1
231,442	-		MMJJ_RS01205	0.12	-1.9
231,476	-		MMJJ_RS01205	0.15	-2.9
231,476	-		MMJJ_RS01205	0.15	+0.2
231,476	-		MMJJ_RS01205	0.15	-0.0
231,477	+		MMJJ_RS01205	0.15	-2.8
231,494	-		MMJJ_RS01205	0.17	-1.6
231,505	+		MMJJ_RS01205	0.18	-0.5
231,505	+		MMJJ_RS01205	0.18	+0.5
231,508	-				+1.1
231,508	-		MMJJ_RS01205	0.19	+1.1
231,508	-		MMJJ_RS01205	0.19	+0.5
231,509	+		MMJJ_RS01205	0.19	+0.4
231,509	+		MMJJ_RS01205	0.19	+0.1
231,509	+		MMJJ_RS01205	0.19	-2.1
231,509	+		MMJJ_RS01205	0.19	+3.6
231,509	+		MMJJ_RS01205	0.19	+1.9
231,534	+		MMJJ_RS01205	0.21	+1.4
231,582	+		MMJJ_RS01205	0.27	+0.4
231,582	+		MMJJ_RS01205	0.27	+0.7
231,594	+		MMJJ_RS01205	0.28	+0.8
231,599	-		MMJJ_RS01205	0.29	-1.5
231,637	-		MMJJ_RS01205	0.33	+0.7
231,638	+		MMJJ_RS01205	0.33	+1.0
231,638	+		MMJJ_RS01205	0.33	-1.9
231,639	-		MMJJ_RS01205	0.33	+0.1
231,683	-		MMJJ_RS01205	0.38	-1.9
231,685	-		MMJJ_RS01205	0.38	+1.3
231,769	-		MMJJ_RS01205	0.47	-3.0
231,770	+		MMJJ_RS01205	0.47	-0.1
231,803	-		MMJJ_RS01205	0.51	-0.5
231,813	+		MMJJ_RS01205	0.52	+1.3
231,825	+		MMJJ_RS01205	0.53	-4.2
231,891	+		MMJJ_RS01205	0.60	-0.4
231,891	+		MMJJ_RS01205	0.60	-1.1
231,916	-		MMJJ_RS01205	0.63	-0.6
231,917	+		MMJJ_RS01205	0.63	-2.5
231,927	-		MMJJ_RS01205	0.64	-1.4
231,935	+		MMJJ_RS01205	0.65	-0.5
231,937	-		MMJJ_RS01205	0.65	-0.2
231,937	-		MMJJ_RS01205	0.65	+2.6
231,938	+		MMJJ_RS01205	0.65	-1.8
231,986	-		MMJJ_RS01205	0.71	-0.5
232,006	+		MMJJ_RS01205	0.73	-2.3