Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01395

Experiment: McCas_formate_complete Rifampicin 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01390 and MMJJ_RS01395 are separated by 69 nucleotidesMMJJ_RS01395 and MMJJ_RS01400 are separated by 26 nucleotides MMJJ_RS01390: MMJJ_RS01390 - MATE family efflux transporter, at 268,109 to 269,452 _RS01390 MMJJ_RS01395: MMJJ_RS01395 - DUF1894 domain-containing protein, at 269,522 to 269,839 _RS01395 MMJJ_RS01400: MMJJ_RS01400 - leucine--tRNA ligase, at 269,866 to 272,733 _RS01400 Position (kb) 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 268.527 kb on - strand, within MMJJ_RS01390at 268.531 kb on + strand, within MMJJ_RS01390at 268.545 kb on - strand, within MMJJ_RS01390at 268.545 kb on - strand, within MMJJ_RS01390at 268.556 kb on - strand, within MMJJ_RS01390at 268.556 kb on - strand, within MMJJ_RS01390at 268.560 kb on - strand, within MMJJ_RS01390at 268.560 kb on - strand, within MMJJ_RS01390at 268.561 kb on + strand, within MMJJ_RS01390at 268.561 kb on + strand, within MMJJ_RS01390at 268.636 kb on - strand, within MMJJ_RS01390at 268.636 kb on - strand, within MMJJ_RS01390at 268.636 kb on - strand, within MMJJ_RS01390at 268.636 kb on - strand, within MMJJ_RS01390at 268.639 kb on + strand, within MMJJ_RS01390at 268.639 kb on + strand, within MMJJ_RS01390at 268.645 kb on + strand, within MMJJ_RS01390at 268.659 kb on - strand, within MMJJ_RS01390at 268.659 kb on - strand, within MMJJ_RS01390at 268.668 kb on - strand, within MMJJ_RS01390at 268.668 kb on - strand, within MMJJ_RS01390at 268.668 kb on - strand, within MMJJ_RS01390at 268.668 kb on - strand, within MMJJ_RS01390at 268.668 kb on - strand, within MMJJ_RS01390at 268.669 kb on + strand, within MMJJ_RS01390at 268.669 kb on + strand, within MMJJ_RS01390at 268.669 kb on + strand, within MMJJ_RS01390at 268.671 kb on - strand, within MMJJ_RS01390at 268.671 kb on - strandat 268.672 kb on + strand, within MMJJ_RS01390at 268.672 kb on + strand, within MMJJ_RS01390at 268.679 kb on + strand, within MMJJ_RS01390at 268.711 kb on + strand, within MMJJ_RS01390at 268.737 kb on + strand, within MMJJ_RS01390at 268.741 kb on - strand, within MMJJ_RS01390at 268.742 kb on + strand, within MMJJ_RS01390at 268.744 kb on + strand, within MMJJ_RS01390at 268.744 kb on + strand, within MMJJ_RS01390at 268.766 kb on + strand, within MMJJ_RS01390at 268.808 kb on + strand, within MMJJ_RS01390at 268.827 kb on - strand, within MMJJ_RS01390at 268.832 kb on + strand, within MMJJ_RS01390at 268.862 kb on + strand, within MMJJ_RS01390at 268.863 kb on - strand, within MMJJ_RS01390at 268.863 kb on - strand, within MMJJ_RS01390at 268.863 kb on - strand, within MMJJ_RS01390at 268.863 kb on - strand, within MMJJ_RS01390at 268.863 kb on - strand, within MMJJ_RS01390at 268.863 kb on - strand, within MMJJ_RS01390at 268.863 kb on - strand, within MMJJ_RS01390at 268.864 kb on + strand, within MMJJ_RS01390at 268.864 kb on + strand, within MMJJ_RS01390at 268.864 kb on + strand, within MMJJ_RS01390at 268.864 kb on + strand, within MMJJ_RS01390at 268.864 kb on + strand, within MMJJ_RS01390at 268.864 kb on + strand, within MMJJ_RS01390at 268.867 kb on - strand, within MMJJ_RS01390at 268.868 kb on + strand, within MMJJ_RS01390at 268.891 kb on - strand, within MMJJ_RS01390at 268.905 kb on - strand, within MMJJ_RS01390at 268.906 kb on + strand, within MMJJ_RS01390at 268.906 kb on + strand, within MMJJ_RS01390at 268.907 kb on - strand, within MMJJ_RS01390at 268.908 kb on + strand, within MMJJ_RS01390at 268.908 kb on + strand, within MMJJ_RS01390at 268.908 kb on + strand, within MMJJ_RS01390at 268.941 kb on - strand, within MMJJ_RS01390at 268.942 kb on + strand, within MMJJ_RS01390at 269.016 kb on + strand, within MMJJ_RS01390at 269.017 kb on - strand, within MMJJ_RS01390at 269.018 kb on + strand, within MMJJ_RS01390at 269.018 kb on + strand, within MMJJ_RS01390at 269.018 kb on + strand, within MMJJ_RS01390at 269.021 kb on - strand, within MMJJ_RS01390at 269.037 kb on - strand, within MMJJ_RS01390at 269.038 kb on + strand, within MMJJ_RS01390at 269.071 kb on + strand, within MMJJ_RS01390at 269.104 kb on - strand, within MMJJ_RS01390at 269.105 kb on + strand, within MMJJ_RS01390at 269.107 kb on + strand, within MMJJ_RS01390at 269.112 kb on - strand, within MMJJ_RS01390at 269.112 kb on - strand, within MMJJ_RS01390at 269.112 kb on - strand, within MMJJ_RS01390at 269.142 kb on - strand, within MMJJ_RS01390at 269.143 kb on + strand, within MMJJ_RS01390at 269.148 kb on - strand, within MMJJ_RS01390at 269.163 kb on - strand, within MMJJ_RS01390at 269.193 kb on - strand, within MMJJ_RS01390at 269.236 kb on + strand, within MMJJ_RS01390at 269.244 kb on - strand, within MMJJ_RS01390at 269.244 kb on - strand, within MMJJ_RS01390at 269.246 kb on - strand, within MMJJ_RS01390at 269.304 kb on - strand, within MMJJ_RS01390at 269.305 kb on + strand, within MMJJ_RS01390at 269.388 kb on - strandat 269.413 kb on - strandat 269.414 kb on + strandat 269.414 kb on + strandat 269.415 kb on - strandat 269.416 kb on + strandat 269.416 kb on + strandat 269.442 kb on - strandat 269.442 kb on - strandat 269.443 kb on + strandat 269.472 kb on + strandat 269.472 kb on + strandat 269.494 kb on - strandat 269.495 kb on + strandat 269.498 kb on - strandat 269.517 kb on - strandat 269.517 kb on - strandat 269.595 kb on - strand, within MMJJ_RS01395at 269.632 kb on + strand, within MMJJ_RS01395at 269.644 kb on - strand, within MMJJ_RS01395at 269.657 kb on - strand, within MMJJ_RS01395at 269.674 kb on + strand, within MMJJ_RS01395at 269.702 kb on + strand, within MMJJ_RS01395at 269.767 kb on - strand, within MMJJ_RS01395at 269.767 kb on - strand, within MMJJ_RS01395at 269.767 kb on - strand, within MMJJ_RS01395at 269.773 kb on + strand, within MMJJ_RS01395

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Rifampicin 0.25 mM
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268,527 - MMJJ_RS01390 0.31 +1.3
268,531 + MMJJ_RS01390 0.31 -1.7
268,545 - MMJJ_RS01390 0.32 +0.2
268,545 - MMJJ_RS01390 0.32 -1.6
268,556 - MMJJ_RS01390 0.33 -1.1
268,556 - MMJJ_RS01390 0.33 +2.3
268,560 - MMJJ_RS01390 0.34 +1.0
268,560 - MMJJ_RS01390 0.34 +0.3
268,561 + MMJJ_RS01390 0.34 +0.7
268,561 + MMJJ_RS01390 0.34 -0.6
268,636 - MMJJ_RS01390 0.39 -0.7
268,636 - MMJJ_RS01390 0.39 -2.2
268,636 - MMJJ_RS01390 0.39 -2.2
268,636 - MMJJ_RS01390 0.39 -1.0
268,639 + MMJJ_RS01390 0.39 -3.3
268,639 + MMJJ_RS01390 0.39 -2.6
268,645 + MMJJ_RS01390 0.40 +1.0
268,659 - MMJJ_RS01390 0.41 -0.9
268,659 - MMJJ_RS01390 0.41 -2.7
268,668 - MMJJ_RS01390 0.42 +1.4
268,668 - MMJJ_RS01390 0.42 +1.5
268,668 - MMJJ_RS01390 0.42 -0.9
268,668 - MMJJ_RS01390 0.42 -0.6
268,668 - MMJJ_RS01390 0.42 -0.0
268,669 + MMJJ_RS01390 0.42 -2.5
268,669 + MMJJ_RS01390 0.42 -2.2
268,669 + MMJJ_RS01390 0.42 -2.3
268,671 - MMJJ_RS01390 0.42 -2.2
268,671 - +2.0
268,672 + MMJJ_RS01390 0.42 -0.5
268,672 + MMJJ_RS01390 0.42 -1.1
268,679 + MMJJ_RS01390 0.42 -0.6
268,711 + MMJJ_RS01390 0.45 -2.0
268,737 + MMJJ_RS01390 0.47 -1.0
268,741 - MMJJ_RS01390 0.47 +1.6
268,742 + MMJJ_RS01390 0.47 +0.8
268,744 + MMJJ_RS01390 0.47 -3.1
268,744 + MMJJ_RS01390 0.47 -0.1
268,766 + MMJJ_RS01390 0.49 +1.0
268,808 + MMJJ_RS01390 0.52 +2.3
268,827 - MMJJ_RS01390 0.53 -0.6
268,832 + MMJJ_RS01390 0.54 -3.5
268,862 + MMJJ_RS01390 0.56 -0.0
268,863 - MMJJ_RS01390 0.56 +0.4
268,863 - MMJJ_RS01390 0.56 +0.0
268,863 - MMJJ_RS01390 0.56 -1.3
268,863 - MMJJ_RS01390 0.56 -1.7
268,863 - MMJJ_RS01390 0.56 +0.8
268,863 - MMJJ_RS01390 0.56 -0.5
268,863 - MMJJ_RS01390 0.56 +1.9
268,864 + MMJJ_RS01390 0.56 +1.0
268,864 + MMJJ_RS01390 0.56 +3.0
268,864 + MMJJ_RS01390 0.56 -0.0
268,864 + MMJJ_RS01390 0.56 -2.1
268,864 + MMJJ_RS01390 0.56 -1.5
268,864 + MMJJ_RS01390 0.56 -2.6
268,867 - MMJJ_RS01390 0.56 +0.5
268,868 + MMJJ_RS01390 0.56 -0.0
268,891 - MMJJ_RS01390 0.58 +0.4
268,905 - MMJJ_RS01390 0.59 -1.2
268,906 + MMJJ_RS01390 0.59 -0.0
268,906 + MMJJ_RS01390 0.59 -0.3
268,907 - MMJJ_RS01390 0.59 -2.3
268,908 + MMJJ_RS01390 0.59 +3.5
268,908 + MMJJ_RS01390 0.59 +2.0
268,908 + MMJJ_RS01390 0.59 +0.2
268,941 - MMJJ_RS01390 0.62 -0.7
268,942 + MMJJ_RS01390 0.62 -0.1
269,016 + MMJJ_RS01390 0.67 +0.7
269,017 - MMJJ_RS01390 0.68 -2.0
269,018 + MMJJ_RS01390 0.68 -0.0
269,018 + MMJJ_RS01390 0.68 +0.3
269,018 + MMJJ_RS01390 0.68 +2.0
269,021 - MMJJ_RS01390 0.68 -1.3
269,037 - MMJJ_RS01390 0.69 +1.2
269,038 + MMJJ_RS01390 0.69 +1.4
269,071 + MMJJ_RS01390 0.72 +0.6
269,104 - MMJJ_RS01390 0.74 -0.3
269,105 + MMJJ_RS01390 0.74 -0.6
269,107 + MMJJ_RS01390 0.74 -0.8
269,112 - MMJJ_RS01390 0.75 +0.1
269,112 - MMJJ_RS01390 0.75 +1.6
269,112 - MMJJ_RS01390 0.75 -0.7
269,142 - MMJJ_RS01390 0.77 +0.4
269,143 + MMJJ_RS01390 0.77 -1.7
269,148 - MMJJ_RS01390 0.77 -0.7
269,163 - MMJJ_RS01390 0.78 -0.3
269,193 - MMJJ_RS01390 0.81 -0.8
269,236 + MMJJ_RS01390 0.84 -1.2
269,244 - MMJJ_RS01390 0.84 +1.1
269,244 - MMJJ_RS01390 0.84 +1.3
269,246 - MMJJ_RS01390 0.85 -2.5
269,304 - MMJJ_RS01390 0.89 +1.6
269,305 + MMJJ_RS01390 0.89 +0.0
269,388 - +0.9
269,413 - +0.6
269,414 + -0.9
269,414 + -1.9
269,415 - -2.8
269,416 + -0.2
269,416 + -1.5
269,442 - -1.3
269,442 - -1.6
269,443 + -2.0
269,472 + -2.3
269,472 + -1.3
269,494 - -1.3
269,495 + +0.7
269,498 - -2.1
269,517 - -0.3
269,517 - -2.6
269,595 - MMJJ_RS01395 0.23 +3.6
269,632 + MMJJ_RS01395 0.35 +0.5
269,644 - MMJJ_RS01395 0.38 +2.2
269,657 - MMJJ_RS01395 0.42 -0.5
269,674 + MMJJ_RS01395 0.48 -1.0
269,702 + MMJJ_RS01395 0.57 -0.0
269,767 - MMJJ_RS01395 0.77 +0.6
269,767 - MMJJ_RS01395 0.77 -1.3
269,767 - MMJJ_RS01395 0.77 +1.8
269,773 + MMJJ_RS01395 0.79 -3.0

Or see this region's nucleotide sequence