Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04930

Experiment: McCas_formate_complete Polymyxin B sulfate 0.05 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Polymyxin B sulfate 0.05 mM
915,505	+		MMJJ_RS04925	0.29	-0.8
915,572	-		MMJJ_RS04925	0.35	-1.7
915,604	-		MMJJ_RS04925	0.38	+1.1
915,645	+		MMJJ_RS04925	0.41	-0.3
915,665	+		MMJJ_RS04925	0.43	+0.7
915,665	+		MMJJ_RS04925	0.43	-3.2
915,676	-		MMJJ_RS04925	0.44	+0.5
915,766	-		MMJJ_RS04925	0.51	+0.6
915,766	-		MMJJ_RS04925	0.51	-0.2
915,766	-		MMJJ_RS04925	0.51	-1.6
915,766	-		MMJJ_RS04925	0.51	+1.3
915,767	+		MMJJ_RS04925	0.52	+0.6
915,770	-		MMJJ_RS04925	0.52	-0.3
915,770	-		MMJJ_RS04925	0.52	+2.0
915,802	-		MMJJ_RS04925	0.55	+1.7
915,803	+		MMJJ_RS04925	0.55	-3.4
915,815	+		MMJJ_RS04925	0.56	+2.4
915,829	-		MMJJ_RS04925	0.57	-3.4
915,830	+		MMJJ_RS04925	0.57	-0.2
915,844	-		MMJJ_RS04925	0.58	-1.1
915,961	-		MMJJ_RS04925	0.68	+1.9
915,971	-		MMJJ_RS04925	0.69	-2.9
915,971	-		MMJJ_RS04925	0.69	+2.6
915,971	-		MMJJ_RS04925	0.69	-0.8
915,972	+		MMJJ_RS04925	0.69	+2.7
915,972	+		MMJJ_RS04925	0.69	+0.4
915,973	-		MMJJ_RS04925	0.69	-2.6
915,973	-		MMJJ_RS04925	0.69	-2.2
915,976	-		MMJJ_RS04925	0.69	+0.2
915,977	+		MMJJ_RS04925	0.69	+0.2
915,985	-		MMJJ_RS04925	0.70	-1.3
915,994	-		MMJJ_RS04925	0.71	+0.0
915,994	-		MMJJ_RS04925	0.71	+0.2
915,994	-		MMJJ_RS04925	0.71	+0.1
915,994	-		MMJJ_RS04925	0.71	+1.7
915,995	+		MMJJ_RS04925	0.71	+0.0
915,995	+		MMJJ_RS04925	0.71	-0.3
915,998	-		MMJJ_RS04925	0.71	-0.9
915,999	+		MMJJ_RS04925	0.71	-0.8
916,048	+		MMJJ_RS04925	0.75	-0.5
916,048	+		MMJJ_RS04925	0.75	-1.6
916,057	-		MMJJ_RS04925	0.76	+0.3
916,060	-		MMJJ_RS04925	0.76	-0.5
916,063	-		MMJJ_RS04925	0.77	+1.5
916,081	-		MMJJ_RS04925	0.78	-2.4
916,081	-		MMJJ_RS04925	0.78	-0.3
916,082	+		MMJJ_RS04925	0.78	-1.7
916,085	-		MMJJ_RS04925	0.79	+0.7
916,196	-		MMJJ_RS04925	0.88	-1.4
916,207	-		MMJJ_RS04925	0.89	-0.1
916,207	-		MMJJ_RS04925	0.89	-2.0
916,207	-		MMJJ_RS04925	0.89	+1.5
916,271	-				+0.1
916,272	+				-3.2
916,374	-				-0.5
916,376	-				-2.4
916,492	-		MMJJ_RS04930	0.12	+0.4
916,492	-		MMJJ_RS04930	0.12	-2.1
916,493	+		MMJJ_RS04930	0.12	+1.5
916,493	+		MMJJ_RS04930	0.12	+1.9
916,495	+		MMJJ_RS04930	0.12	-3.9
916,495	+		MMJJ_RS04930	0.12	+0.0
916,495	+		MMJJ_RS04930	0.12	-1.6
916,505	-		MMJJ_RS04930	0.13	+2.1
916,550	+		MMJJ_RS04930	0.17	-0.5
916,675	-		MMJJ_RS04930	0.28	-0.8
916,738	-		MMJJ_RS04930	0.33	-1.5
916,738	-		MMJJ_RS04930	0.33	-0.2
916,864	-		MMJJ_RS04930	0.44	-1.5
916,865	+		MMJJ_RS04930	0.44	+0.6
916,865	+		MMJJ_RS04930	0.44	+3.2
916,870	+		MMJJ_RS04930	0.45	-1.6
916,959	-		MMJJ_RS04930	0.52	+1.4
916,996	-		MMJJ_RS04930	0.55	+0.2
916,996	-		MMJJ_RS04930	0.55	-0.4
916,996	-		MMJJ_RS04930	0.55	-2.9
916,997	+		MMJJ_RS04930	0.56	-1.2
917,003	+		MMJJ_RS04930	0.56	-0.9
917,015	+		MMJJ_RS04930	0.57	-1.0
917,015	+				+0.0
917,018	-		MMJJ_RS04930	0.57	-0.3
917,018	-		MMJJ_RS04930	0.57	+0.1
917,019	+		MMJJ_RS04930	0.57	-0.7
917,019	+		MMJJ_RS04930	0.57	-1.5
917,019	+		MMJJ_RS04930	0.57	-1.4
917,039	-		MMJJ_RS04930	0.59	+1.0
917,039	-		MMJJ_RS04930	0.59	-1.0
917,039	-		MMJJ_RS04930	0.59	+0.0
917,039	-		MMJJ_RS04930	0.59	-2.3
917,039	-		MMJJ_RS04930	0.59	-0.4
917,040	+		MMJJ_RS04930	0.59	-0.1
917,043	-				-1.0
917,044	+		MMJJ_RS04930	0.60	+1.1
917,044	+		MMJJ_RS04930	0.60	-1.4
917,044	+		MMJJ_RS04930	0.60	-0.6
917,053	-		MMJJ_RS04930	0.60	-1.8
917,053	-		MMJJ_RS04930	0.60	+1.5
917,108	+		MMJJ_RS04930	0.65	+0.0
917,117	-		MMJJ_RS04930	0.66	+1.3
917,117	-		MMJJ_RS04930	0.66	+1.2
917,118	+		MMJJ_RS04930	0.66	-0.1
917,118	+		MMJJ_RS04930	0.66	+2.3
917,154	-		MMJJ_RS04930	0.69	-2.2
917,156	-		MMJJ_RS04930	0.69	-0.8
917,208	-		MMJJ_RS04930	0.74	+1.0
917,209	+		MMJJ_RS04930	0.74	-3.5
917,220	-		MMJJ_RS04930	0.75	+1.9
917,221	+		MMJJ_RS04930	0.75	+1.1
917,354	+		MMJJ_RS04930	0.87	-0.2
917,476	-				+0.4
917,483	-				-2.6
917,484	+				+0.9
917,484	+				+0.0
917,521	-				-0.5
917,521	-				-3.3
917,528	-				+0.4
917,528	-				-2.0
917,528	-				-0.4
917,528	-				-3.7
917,529	+				-0.6
917,529	+				-2.0
917,530	-				+1.2
917,530	-				-1.6
917,531	+				+0.7
917,553	-				-2.1
917,553	-				-1.0
917,554	+				+1.8
917,554	+				-1.2
917,554	+				-2.0
917,554	+				-0.0
917,557	-				-1.0
917,557	-				+1.9
917,557	-				+0.4
917,558	+				-0.2
917,558	+				+2.4
917,558	+				-1.6
917,558	+				-1.8
917,558	+				+0.6
917,571	-				-0.6
917,572	+				-1.6
917,572	+				-1.8
917,581	-				+1.2
917,582	+				+1.1
917,592	+				+1.3
917,597	-				-1.2
917,597	-				+0.0
917,597	-				+0.2
917,597	-				-0.4
917,598	+				+1.2
917,598	+				-0.3
917,601	-				-1.8
917,601	-				-4.6
917,601	-				-0.6
917,602	+				+1.3
917,602	+				+1.1
917,602	+				+1.2
917,608	-				+0.2
917,617	-				+1.4
917,617	-				+1.3
917,617	-				+1.1
917,618	+				-1.4
917,618	+				-1.1
917,646	-				+0.3
917,646	-				-0.1
917,647	+				+0.4
917,647	+				+1.0
917,650	-				+0.8
917,651	+				-1.3
917,655	-				+3.0
917,656	+				-1.6
917,656	+				-0.7
917,656	+				+0.8
917,657	-				-2.6
917,657	-				+0.0
917,657	-				-2.2
917,658	+				-1.6
917,659	-				+0.1
917,659	-				-0.9
917,659	-				-0.5
917,660	+				+0.8
917,660	+				+0.5
917,660	+				-2.3
917,660	+				-0.6
917,660	+				-1.1
917,660	+				-0.1
917,681	+		MMJJ_RS04935	0.15	-1.6
917,715	-		MMJJ_RS04935	0.32	+1.4
917,716	+		MMJJ_RS04935	0.33	+2.5
917,722	-		MMJJ_RS04935	0.36	-1.2
917,744	+		MMJJ_RS04935	0.47	-3.5
917,796	-		MMJJ_RS04935	0.73	+0.7
917,796	-		MMJJ_RS04935	0.73	-0.1
917,797	+		MMJJ_RS04935	0.74	+0.0
917,805	-		MMJJ_RS04935	0.78	-0.7
917,805	-		MMJJ_RS04935	0.78	-2.3
917,847	+				-0.7
917,856	-				-0.1
917,856	-				-1.8
917,865	+				+2.0
917,865	+				-0.5
917,870	+				-1.7
917,870	+				+1.8
917,896	-				-0.1
917,897	+				+2.4
917,989	+		MMJJ_RS04940	0.20	+1.2
918,037	-		MMJJ_RS04940	0.29	-1.0
918,037	-		MMJJ_RS04940	0.29	-1.1
918,072	-		MMJJ_RS04940	0.35	-1.1
918,072	-		MMJJ_RS04940	0.35	-1.6
918,072	-		MMJJ_RS04940	0.35	+1.3
918,072	-		MMJJ_RS04940	0.35	+1.1
918,073	+		MMJJ_RS04940	0.35	-2.5
918,073	+		MMJJ_RS04940	0.35	-0.9
918,073	+		MMJJ_RS04940	0.35	+1.0
918,076	+		MMJJ_RS04940	0.36	+0.1
918,092	-		MMJJ_RS04940	0.39	+0.7
918,103	-		MMJJ_RS04940	0.41	+0.0
918,104	+		MMJJ_RS04940	0.41	-0.4
918,104	+		MMJJ_RS04940	0.41	-1.8
918,105	-		MMJJ_RS04940	0.41	-0.3
918,105	-		MMJJ_RS04940	0.41	-3.0
918,105	-		MMJJ_RS04940	0.41	+2.0
918,105	-		MMJJ_RS04940	0.41	-1.8
918,105	-		MMJJ_RS04940	0.41	+0.6
918,106	+		MMJJ_RS04940	0.41	-1.6
918,106	+				+1.0
918,141	+		MMJJ_RS04940	0.48	-2.3
918,183	+		MMJJ_RS04940	0.55	+1.4
918,227	-		MMJJ_RS04940	0.63	+0.5
918,228	+		MMJJ_RS04940	0.64	+2.9
918,293	-		MMJJ_RS04940	0.75	+1.6
918,293	-		MMJJ_RS04940	0.75	-3.5
918,328	-		MMJJ_RS04940	0.82	+2.9
918,329	+		MMJJ_RS04940	0.82	-0.6
918,347	+		MMJJ_RS04940	0.85	-2.0
918,366	+		MMJJ_RS04940	0.89	-0.8
918,415	-				-2.4
918,415	-				+0.8
918,415	-				+0.7
918,416	+				-0.8
918,446	+				+0.2
918,447	-				+1.9
918,448	+				+0.3
918,452	-				+0.1
918,452	-				-2.6
918,452	-				+0.0
918,452	-				+1.1
918,452	-				+1.0
918,453	+				-1.6
918,453	+				-0.4
918,453	+				+1.3
918,453	+				+0.6
918,453	+				+1.6
918,454	-				+1.5
918,454	-				-3.0
918,455	+				+1.2
918,455	+				+2.3
918,455	+				+2.0
918,455	+				-0.9
918,456	-				+1.5
918,458	-				+0.8
918,458	-				+0.4
918,459	+				+1.1
918,459	+				-1.3
918,467	-				+1.7
918,468	+				-4.3
918,468	+				-2.0
918,469	-				+1.9
918,469	-				+2.5
918,470	+				-2.3
918,470	+				+0.3
918,477	-				+0.2
918,478	+				+1.2
918,479	-				+2.5
918,488	-				-0.5
918,488	-				+1.0
918,489	+				+3.8
918,489	+				-2.6
918,493	-				+0.0
918,493	-				+1.5
918,493	-				-1.8
918,494	+				+0.2
918,495	-				-0.2
918,495	-				-2.6