Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00410

Experiment: McCas_formate_complete phosphite 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00395 and MMJJ_RS00400 are separated by 42 nucleotidesMMJJ_RS00400 and MMJJ_RS00405 are separated by 76 nucleotidesMMJJ_RS00405 and MMJJ_RS00410 are separated by 43 nucleotidesMMJJ_RS00410 and MMJJ_RS00415 are separated by 43 nucleotidesMMJJ_RS00415 and MMJJ_RS00420 are separated by 14 nucleotides MMJJ_RS00395: MMJJ_RS00395 - DUF473 domain-containing protein, at 74,673 to 75,050 _RS00395 MMJJ_RS00400: MMJJ_RS00400 - tautomerase family protein, at 75,093 to 75,287 _RS00400 MMJJ_RS00405: MMJJ_RS00405 - flavodoxin family protein, at 75,364 to 75,945 _RS00405 MMJJ_RS00410: MMJJ_RS00410 - hypothetical protein, at 75,989 to 76,417 _RS00410 MMJJ_RS00415: MMJJ_RS00415 - DedA family protein, at 76,461 to 76,943 _RS00415 MMJJ_RS00420: MMJJ_RS00420 - CBS domain-containing protein, at 76,958 to 77,338 _RS00420 Position (kb) 75 76 77Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 75.016 kb on - strandat 75.038 kb on + strandat 75.039 kb on - strandat 75.109 kb on - strandat 75.124 kb on - strand, within MMJJ_RS00400at 75.181 kb on - strand, within MMJJ_RS00400at 75.211 kb on - strand, within MMJJ_RS00400at 75.212 kb on + strand, within MMJJ_RS00400at 75.215 kb on - strand, within MMJJ_RS00400at 75.215 kb on - strand, within MMJJ_RS00400at 75.266 kb on + strand, within MMJJ_RS00400at 75.266 kb on + strand, within MMJJ_RS00400at 75.272 kb on - strandat 75.300 kb on - strandat 75.301 kb on + strandat 75.342 kb on - strandat 75.343 kb on + strandat 75.371 kb on - strandat 75.371 kb on - strandat 75.434 kb on - strand, within MMJJ_RS00405at 75.472 kb on + strand, within MMJJ_RS00405at 75.494 kb on - strand, within MMJJ_RS00405at 75.540 kb on - strand, within MMJJ_RS00405at 75.540 kb on - strand, within MMJJ_RS00405at 75.541 kb on + strand, within MMJJ_RS00405at 75.541 kb on + strand, within MMJJ_RS00405at 75.541 kb on + strand, within MMJJ_RS00405at 75.548 kb on - strand, within MMJJ_RS00405at 75.596 kb on - strand, within MMJJ_RS00405at 75.596 kb on - strand, within MMJJ_RS00405at 75.616 kb on - strand, within MMJJ_RS00405at 75.616 kb on - strand, within MMJJ_RS00405at 75.685 kb on + strand, within MMJJ_RS00405at 75.754 kb on + strand, within MMJJ_RS00405at 75.781 kb on + strand, within MMJJ_RS00405at 75.827 kb on + strand, within MMJJ_RS00405at 75.941 kb on - strandat 75.942 kb on + strandat 75.943 kb on - strandat 75.946 kb on - strandat 75.947 kb on + strandat 75.966 kb on - strandat 75.976 kb on - strandat 76.026 kb on - strandat 76.030 kb on + strandat 76.077 kb on - strand, within MMJJ_RS00410at 76.082 kb on + strand, within MMJJ_RS00410at 76.085 kb on + strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.086 kb on - strand, within MMJJ_RS00410at 76.102 kb on - strand, within MMJJ_RS00410at 76.152 kb on - strand, within MMJJ_RS00410at 76.198 kb on - strand, within MMJJ_RS00410at 76.198 kb on - strand, within MMJJ_RS00410at 76.251 kb on - strand, within MMJJ_RS00410at 76.252 kb on + strand, within MMJJ_RS00410at 76.268 kb on - strand, within MMJJ_RS00410at 76.268 kb on - strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410at 76.269 kb on + strand, within MMJJ_RS00410at 76.292 kb on + strand, within MMJJ_RS00410at 76.292 kb on + strand, within MMJJ_RS00410at 76.292 kb on + strand, within MMJJ_RS00410at 76.299 kb on + strand, within MMJJ_RS00410at 76.299 kb on + strand, within MMJJ_RS00410at 76.416 kb on + strandat 76.416 kb on + strandat 76.416 kb on + strandat 76.424 kb on + strandat 76.458 kb on + strandat 76.458 kb on + strandat 76.463 kb on + strandat 76.463 kb on + strandat 76.482 kb on - strandat 76.483 kb on + strandat 76.513 kb on + strand, within MMJJ_RS00415at 76.519 kb on + strand, within MMJJ_RS00415at 76.582 kb on + strand, within MMJJ_RS00415at 76.647 kb on - strand, within MMJJ_RS00415at 76.647 kb on - strand, within MMJJ_RS00415at 76.680 kb on + strand, within MMJJ_RS00415at 76.751 kb on - strand, within MMJJ_RS00415at 76.751 kb on - strand, within MMJJ_RS00415at 76.763 kb on - strand, within MMJJ_RS00415at 76.783 kb on + strand, within MMJJ_RS00415at 76.833 kb on + strand, within MMJJ_RS00415at 76.833 kb on + strand, within MMJJ_RS00415at 76.836 kb on - strand, within MMJJ_RS00415at 76.837 kb on + strand, within MMJJ_RS00415at 76.837 kb on + strand, within MMJJ_RS00415at 76.838 kb on - strand, within MMJJ_RS00415at 76.839 kb on + strand, within MMJJ_RS00415at 76.839 kb on + strand, within MMJJ_RS00415at 76.839 kb on + strand, within MMJJ_RS00415at 76.845 kb on - strand, within MMJJ_RS00415at 76.903 kb on - strandat 76.908 kb on + strandat 76.908 kb on + strandat 76.911 kb on - strandat 76.982 kb on - strandat 76.998 kb on + strand, within MMJJ_RS00420at 76.999 kb on - strand, within MMJJ_RS00420at 77.030 kb on - strand, within MMJJ_RS00420at 77.045 kb on - strand, within MMJJ_RS00420at 77.108 kb on - strand, within MMJJ_RS00420at 77.138 kb on - strand, within MMJJ_RS00420at 77.138 kb on - strand, within MMJJ_RS00420at 77.138 kb on - strand, within MMJJ_RS00420at 77.139 kb on + strand, within MMJJ_RS00420at 77.139 kb on + strand, within MMJJ_RS00420at 77.199 kb on + strand, within MMJJ_RS00420at 77.199 kb on + strand, within MMJJ_RS00420at 77.199 kb on + strand, within MMJJ_RS00420at 77.200 kb on - strand, within MMJJ_RS00420at 77.222 kb on - strand, within MMJJ_RS00420at 77.222 kb on - strand, within MMJJ_RS00420at 77.223 kb on + strand, within MMJJ_RS00420at 77.228 kb on - strand, within MMJJ_RS00420at 77.229 kb on + strand, within MMJJ_RS00420at 77.252 kb on + strand, within MMJJ_RS00420at 77.262 kb on + strand, within MMJJ_RS00420at 77.266 kb on - strand, within MMJJ_RS00420at 77.367 kb on - strandat 77.370 kb on - strandat 77.370 kb on - strandat 77.371 kb on + strandat 77.372 kb on - strandat 77.372 kb on - strandat 77.373 kb on + strandat 77.373 kb on + strandat 77.374 kb on - strandat 77.374 kb on - strandat 77.375 kb on + strandat 77.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete phosphite 25 mM
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75,016 - -1.1
75,038 + -1.4
75,039 - -0.2
75,109 - +0.4
75,124 - MMJJ_RS00400 0.16 -1.8
75,181 - MMJJ_RS00400 0.45 +0.6
75,211 - MMJJ_RS00400 0.61 +1.8
75,212 + MMJJ_RS00400 0.61 -1.2
75,215 - MMJJ_RS00400 0.63 -0.9
75,215 - MMJJ_RS00400 0.63 +1.1
75,266 + MMJJ_RS00400 0.89 -0.7
75,266 + MMJJ_RS00400 0.89 -0.3
75,272 - +2.5
75,300 - +1.0
75,301 + +0.3
75,342 - -0.8
75,343 + +2.2
75,371 - +0.9
75,371 - +1.7
75,434 - MMJJ_RS00405 0.12 -0.3
75,472 + MMJJ_RS00405 0.19 +0.2
75,494 - MMJJ_RS00405 0.22 +0.4
75,540 - MMJJ_RS00405 0.30 -0.4
75,540 - MMJJ_RS00405 0.30 -0.2
75,541 + MMJJ_RS00405 0.30 +1.9
75,541 + MMJJ_RS00405 0.30 -1.4
75,541 + MMJJ_RS00405 0.30 -1.3
75,548 - MMJJ_RS00405 0.32 +2.2
75,596 - MMJJ_RS00405 0.40 +0.5
75,596 - MMJJ_RS00405 0.40 -1.6
75,616 - MMJJ_RS00405 0.43 -0.3
75,616 - MMJJ_RS00405 0.43 -1.9
75,685 + MMJJ_RS00405 0.55 -3.3
75,754 + MMJJ_RS00405 0.67 +0.7
75,781 + MMJJ_RS00405 0.72 +0.2
75,827 + MMJJ_RS00405 0.80 +0.2
75,941 - +1.5
75,942 + +0.7
75,943 - -2.3
75,946 - -0.5
75,947 + -0.3
75,966 - -0.0
75,976 - +1.6
76,026 - +0.3
76,030 + -0.4
76,077 - MMJJ_RS00410 0.21 -0.1
76,082 + MMJJ_RS00410 0.22 -0.7
76,085 + MMJJ_RS00410 0.22 +0.5
76,086 - MMJJ_RS00410 0.23 -0.7
76,086 - MMJJ_RS00410 0.23 +0.1
76,086 - MMJJ_RS00410 0.23 -3.2
76,086 - MMJJ_RS00410 0.23 +1.4
76,102 - MMJJ_RS00410 0.26 -0.3
76,152 - MMJJ_RS00410 0.38 -0.2
76,198 - MMJJ_RS00410 0.49 +0.0
76,198 - MMJJ_RS00410 0.49 -1.0
76,251 - MMJJ_RS00410 0.61 -0.5
76,252 + MMJJ_RS00410 0.61 -1.1
76,268 - MMJJ_RS00410 0.65 -0.3
76,268 - MMJJ_RS00410 0.65 +1.2
76,269 + MMJJ_RS00410 0.65 +0.8
76,269 + MMJJ_RS00410 0.65 -1.3
76,269 + MMJJ_RS00410 0.65 -1.3
76,269 + MMJJ_RS00410 0.65 -1.4
76,292 + MMJJ_RS00410 0.71 -0.5
76,292 + MMJJ_RS00410 0.71 +0.1
76,292 + MMJJ_RS00410 0.71 +0.0
76,299 + MMJJ_RS00410 0.72 -0.9
76,299 + MMJJ_RS00410 0.72 -2.3
76,416 + -0.0
76,416 + +0.4
76,416 + +1.3
76,424 + +1.9
76,458 + -0.5
76,458 + -2.4
76,463 + +0.9
76,463 + +0.0
76,482 - +2.9
76,483 + -3.8
76,513 + MMJJ_RS00415 0.11 -2.3
76,519 + MMJJ_RS00415 0.12 +4.1
76,582 + MMJJ_RS00415 0.25 -1.6
76,647 - MMJJ_RS00415 0.39 -1.8
76,647 - MMJJ_RS00415 0.39 +0.8
76,680 + MMJJ_RS00415 0.45 -3.3
76,751 - MMJJ_RS00415 0.60 +0.9
76,751 - MMJJ_RS00415 0.60 -2.2
76,763 - MMJJ_RS00415 0.63 +5.1
76,783 + MMJJ_RS00415 0.67 -3.8
76,833 + MMJJ_RS00415 0.77 -2.4
76,833 + MMJJ_RS00415 0.77 -3.8
76,836 - MMJJ_RS00415 0.78 +1.1
76,837 + MMJJ_RS00415 0.78 -1.8
76,837 + MMJJ_RS00415 0.78 -0.4
76,838 - MMJJ_RS00415 0.78 -2.8
76,839 + MMJJ_RS00415 0.78 +2.8
76,839 + MMJJ_RS00415 0.78 -3.8
76,839 + MMJJ_RS00415 0.78 -1.4
76,845 - MMJJ_RS00415 0.80 +0.1
76,903 - +1.2
76,908 + +1.0
76,908 + -0.4
76,911 - -2.6
76,982 - +2.1
76,998 + MMJJ_RS00420 0.10 +0.4
76,999 - MMJJ_RS00420 0.11 +1.9
77,030 - MMJJ_RS00420 0.19 +1.2
77,045 - MMJJ_RS00420 0.23 +0.6
77,108 - MMJJ_RS00420 0.39 -1.0
77,138 - MMJJ_RS00420 0.47 +1.0
77,138 - MMJJ_RS00420 0.47 +0.4
77,138 - MMJJ_RS00420 0.47 -3.9
77,139 + MMJJ_RS00420 0.48 +0.1
77,139 + MMJJ_RS00420 0.48 +1.7
77,199 + MMJJ_RS00420 0.63 +1.0
77,199 + MMJJ_RS00420 0.63 +0.3
77,199 + MMJJ_RS00420 0.63 -1.0
77,200 - MMJJ_RS00420 0.64 +0.6
77,222 - MMJJ_RS00420 0.69 -0.4
77,222 - MMJJ_RS00420 0.69 -2.6
77,223 + MMJJ_RS00420 0.70 +2.9
77,228 - MMJJ_RS00420 0.71 +1.2
77,229 + MMJJ_RS00420 0.71 -1.6
77,252 + MMJJ_RS00420 0.77 +0.1
77,262 + MMJJ_RS00420 0.80 +2.9
77,266 - MMJJ_RS00420 0.81 +0.2
77,367 - +2.9
77,370 - -0.2
77,370 - +1.0
77,371 + -0.1
77,372 - -0.6
77,372 - +0.0
77,373 + -0.6
77,373 + +1.5
77,374 - -0.4
77,374 - +0.5
77,375 + -3.2
77,379 + +0.8

Or see this region's nucleotide sequence