Experiment: Control_TnJ
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01097 and ECD_01098 are separated by 59 nucleotides ECD_01098 and ECD_01099 are separated by 333 nucleotides ECD_01099 and ECD_01100 are separated by 2 nucleotides
ECD_01097: ECD_01097 - fused glucose-specific PTS enzymes: IIB component/IIC component, at 1,160,436 to 1,161,869
_01097
ECD_01098: ECD_01098 - ferric-rhodotorulic acid outer membrane transporter, at 1,161,929 to 1,164,118
_01098
ECD_01099: ECD_01099 - purine nucleoside phosphoramidase, dadA activator protein, at 1,164,452 to 1,164,811
_01099
ECD_01100: ECD_01100 - uncharacterized protein, at 1,164,814 to 1,165,191
_01100
Position (kb)
1161
1162
1163
1164
1165 Strain fitness (log2 ratio)
-1
0
1
2 at 1161.027 kb on + strand, within ECD_01097 at 1161.155 kb on + strand, within ECD_01097 at 1161.281 kb on + strand, within ECD_01097 at 1161.438 kb on - strand, within ECD_01097 at 1161.438 kb on - strand, within ECD_01097 at 1161.537 kb on + strand, within ECD_01097 at 1161.540 kb on + strand, within ECD_01097 at 1161.699 kb on - strand, within ECD_01097 at 1162.144 kb on - strand at 1162.405 kb on + strand, within ECD_01098 at 1162.510 kb on - strand, within ECD_01098 at 1162.584 kb on + strand, within ECD_01098 at 1162.753 kb on - strand, within ECD_01098 at 1163.186 kb on - strand, within ECD_01098 at 1163.186 kb on - strand, within ECD_01098 at 1163.251 kb on - strand, within ECD_01098 at 1163.503 kb on - strand, within ECD_01098 at 1163.527 kb on - strand, within ECD_01098 at 1163.717 kb on - strand, within ECD_01098 at 1163.729 kb on - strand, within ECD_01098 at 1163.731 kb on - strand, within ECD_01098 at 1163.735 kb on - strand, within ECD_01098 at 1163.735 kb on - strand, within ECD_01098 at 1164.045 kb on - strand at 1164.181 kb on - strand at 1164.382 kb on + strand at 1164.387 kb on + strand at 1164.466 kb on + strand at 1164.568 kb on + strand, within ECD_01099
Per-strain Table
Position Strand Gene LocusTag Fraction Control_TnJ remove 1,161,027 + ECD_01097 0.41 +1.0 1,161,155 + ECD_01097 0.50 -0.5 1,161,281 + ECD_01097 0.59 +0.7 1,161,438 - ECD_01097 0.70 -0.4 1,161,438 - ECD_01097 0.70 +1.5 1,161,537 + ECD_01097 0.77 +1.3 1,161,540 + ECD_01097 0.77 -1.4 1,161,699 - ECD_01097 0.88 +0.8 1,162,144 - -0.6 1,162,405 + ECD_01098 0.22 -0.0 1,162,510 - ECD_01098 0.27 +1.3 1,162,584 + ECD_01098 0.30 -0.3 1,162,753 - ECD_01098 0.38 -1.0 1,163,186 - ECD_01098 0.57 +0.7 1,163,186 - ECD_01098 0.57 -0.9 1,163,251 - ECD_01098 0.60 +0.1 1,163,503 - ECD_01098 0.72 -0.9 1,163,527 - ECD_01098 0.73 -0.3 1,163,717 - ECD_01098 0.82 +0.3 1,163,729 - ECD_01098 0.82 +0.9 1,163,731 - ECD_01098 0.82 +1.0 1,163,735 - ECD_01098 0.82 +0.8 1,163,735 - ECD_01098 0.82 -0.1 1,164,045 - +2.7 1,164,181 - -0.5 1,164,382 + -0.5 1,164,387 + -0.8 1,164,466 + -0.5 1,164,568 + ECD_01099 0.32 -1.5
Or see this region's nucleotide sequence